diff tool1/tool1.xml @ 0:9cc0f9a8912e draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool1/tool1.xml	Thu Apr 21 06:45:57 2016 -0400
@@ -0,0 +1,74 @@
+<tool id="tool1" name="tool1" version="0.01">
+<description>grep command</description>
+
+<command interpreter="python">
+
+            tool1.py --script_path "$runMe" --interpreter "python" 
+                --tool_name "tool1"
+                
+                 --output_dir "./" --output_tab "$output1"
+            
+</command>
+<inputs>
+<param name="job_name" type="text" size="60" label="Supply a name for the outputs to remind you what they contain" value="tool1"/> 
+
+
+</inputs>
+<outputs>
+ <data format="ab1" name="output1" label="${job_name}"/>
+
+</outputs>
+<configfiles>
+<configfile name="runMe">
+ import re
+ hand = open('/home/guest/word.txt')
+ for line in hand:
+     line = line.rstrip()
+     if re.search('is', line) :
+         print line
+</configfile>
+</configfiles>
+<tests>
+
+            <test>
+            
+            <param name="job_name" value="test1"/>
+            <param name="runMe" value="$runMe"/>
+            <output name="output1="tool1_test1_output.xls" ftype="tabular"/>
+            
+            </test>
+            
+</tests>
+<help>
+
+
+get the line.
+
+**Script**
+Pressing execute will run the following code over your input file and generate some outputs in your history::
+
+
+   import re
+ hand = open('/home/guest/word.txt')
+ for line in hand:
+     line = line.rstrip()
+     if re.search('is', line) :
+         print line
+
+**Attribution**
+This Galaxy tool was created by [e-mail] at 13/04/2016 19:49:50
+using the Galaxy Tool Factory.
+
+See https://bitbucket.org/fubar/galaxytoolfactory for details of that project
+Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. 
+Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573
+
+
+This tool was autogenerated from a user provided script using the Galaxy Tool Factory 2
+https://toolshed.g2.bx.psu.edu/view/fubar/tool_factory_2
+</help>
+<citations>
+    
+    <citation type="doi">10.1093/bioinformatics/bts573</citation>
+</citations>
+</tool>