Mercurial > repos > amol > cmpfastq
changeset 10:7604eca31977 draft
Deleted selected files
| author | amol |
|---|---|
| date | Thu, 27 Jun 2013 15:32:43 -0400 |
| parents | 679c91537c47 |
| children | 3a12145c5afa |
| files | cmpfastq.xml tool_dependencies.xml |
| diffstat | 2 files changed, 0 insertions(+), 50 deletions(-) [+] |
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--- a/cmpfastq.xml Thu Jun 27 12:44:44 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,33 +0,0 @@ -<tool id="cmpfastq" name="Compare two fast files"> - <description>Comparing two fastq files</description> - <requirements> - <requirement type="package" version="1">cmpfastq</requirement> - </requirements> - <command interpreter="perl">cmpfastq.plx $input1 $input2 $output1 $output2 $output3 $output4</command> - <inputs> - <param name="input1" type="data" format="fastq" label="Source file 1"/> - <param name="input2" type="data" format="fastq" label="Source file 2"/> - <!--<param name="input3" type="select" label="Option"> - <option value="d">d</option> - <option value="h ">h</option> - </param> --> - </inputs> - <outputs> - <data format="txt" name="output1" file="out3.out" label="Common file 1"/> - <data format="txt" name="output2" file="out4.out" label="Common file 2"/> - <data format="txt" name="output3" file="out5.out" label="Unique file 1"/> - <data format="txt" name="output4" file="out6.out" label="Unique file 2"/> - </outputs> - - <tests> - <test> - <!-- <param name="input" value="fa_gc_content_input.fa"/> - <output name="out_file1" file="fa_gc_content_output.txt"/> --> - </test> - </tests> - - <help> -This tool computes GC content from a FASTA file. - </help> - -</tool>
--- a/tool_dependencies.xml Thu Jun 27 12:44:44 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="cmpfastq" version="1"> - <install version="1.0"> - <actions> - <action type="shell_command">curl -o "cmpfastq.plx" http://compbio.brc.iop.kcl.ac.uk/software/download/cmpfastq</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR/bin</destination_directory> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - </package> -</tool_dependency> \ No newline at end of file