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Migrated tool version 1.0 from old tool shed archive to new tool shed repository
author andreu
date Tue, 07 Jun 2011 17:26:58 -0400
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55561a945415 Migrated tool version 1.0 from old tool shed archive to new tool shed repository
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1 HumMeth27QCReport is a tool for quality control and preprocessing of Illumina's Infinium BeadChip methylation assays. The automated analysis pipeline comprises data import, normalization, quality diagnostics and data export.
55561a945415 Migrated tool version 1.0 from old tool shed archive to new tool shed repository
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55561a945415 Migrated tool version 1.0 from old tool shed archive to new tool shed repository
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3 This requires:
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55561a945415 Migrated tool version 1.0 from old tool shed archive to new tool shed repository
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5 * Perl
55561a945415 Migrated tool version 1.0 from old tool shed archive to new tool shed repository
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6 * Python 2
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7 * R (≥ 2.13.0)
55561a945415 Migrated tool version 1.0 from old tool shed archive to new tool shed repository
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8 * The following R packages: methylumi, lumi, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk2, AnnotationDbi (≥ 0.0.89), Biobase (≥ 1.15.29)