Mercurial > repos > andreu > qcma
comparison HumMeth27QCReport/README.txt @ 0:55561a945415 default tip
Migrated tool version 1.0 from old tool shed archive to new tool shed repository
author | andreu |
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date | Tue, 07 Jun 2011 17:26:58 -0400 |
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1 HumMeth27QCReport is a tool for quality control and preprocessing of Illumina's Infinium BeadChip methylation assays. The automated analysis pipeline comprises data import, normalization, quality diagnostics and data export. | |
2 | |
3 This requires: | |
4 | |
5 * Perl | |
6 * Python 2 | |
7 * R (≥ 2.13.0) | |
8 * The following R packages: methylumi, lumi, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, amap, Hmisc, gplots, plotrix, WriteXLS, tcltk2, AnnotationDbi (≥ 0.0.89), Biobase (≥ 1.15.29) |