changeset 8:fb9082f69bba draft

Deleted selected files

--- a/tool_dependencies.xml	Sat Mar 18 19:07:29 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-
-    <set_environment version="1.0">
-        <environment_variable action="set_to" name="LINKYX_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
-    </set_environment>
-
-    <package name="perl" version="5.18.1">
-        <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-
-    <package name="bioperl" version="1.6.922">
-        <install version="1.0">
-            <actions>
-                <action type="set_environment_for_install">
-                    <repository changeset_revision="a6c82a5d0b51" name="package_samtools_0_1_19_custom" owner="biomonika" toolshed="https://toolshed.g2.bx.psu.edu">
-                        <package name="samtools-fpic" version="0.1.19" />
-                    </repository>
-                    <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-                        <package name="perl" version="5.18.1" />
-                    </repository>
-                </action>
-                <action type="setup_perl_environment">
-                    
-                    <!-- allow downloading and installing an Perl package from cpan.org-->
-                    <package>Getopt::Long</package>
-                    <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.007001.tar.gz</package>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            Bundle::BioPerl
-        </readme>
-    </package>
-</tool_dependency>