Mercurial > repos > anton > vcfgenotypes
view vcfgenotypes.xml @ 1:606e32ff6241
Updated to vcflib 86723982aa
author | Anton Nekrutenko <anton@bx.psu.edu> |
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date | Wed, 25 Jun 2014 16:15:47 -0400 |
parents | 6c636da8765c |
children | ba8bf8f5d88a |
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<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.1"> <requirements> <requirement type="package" version="86723982aa">vcflib</requirement> </requirements> <description>Convert numerical representation of genotypes to allelic</description> <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command> <inputs> <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/> </inputs> <outputs> <data format="tabular" name="out_file1" /> </outputs> <tests> <test> <param name="vcf_input" value="vcflib.vcf"/> <output name="out_file1" file="vcfgenotypes-test1.tab"/> </test> </tests> <help> Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields. ---- Vcfgenotypes is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib). </help> </tool>