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author anton
date Wed, 11 Jun 2014 17:11:28 -0400
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children 606e32ff6241
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<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.1">
<requirements>
    <requirement type="package" version="586c5ae5d57a38dae6b32ea831fb1f7cfa14c9bd">vcflib</requirement>
</requirements>
  <description>Convert numerical representation of genotypes to allelic</description>
  <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
  </inputs>
  <outputs>
    <data format="tabular" name="out_file1" />
  </outputs>
  <tests>
    <test>
      <param name="vcf_input" value="vcflib.vcf"/>
      <output name="out_file1" file="vcfgenotypes-test1.tab"/>
    </test>
    </tests>
  <help>

Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.

----

Vcfgenotypes is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).                                                                                                                                 

</help>
</tool>