Mercurial > repos > arkarachai-fungtammasan > microsatellite_ngs
annotate changespacetounderscore_readname.py @ 3:7cc220e8c2ac
Uploaded
author | arkarachai-fungtammasan |
---|---|
date | Fri, 24 Oct 2014 15:45:00 -0400 |
parents | 20ab85af9505 |
children |
rev | line source |
---|---|
0 | 1 import sys |
2 fd=open(sys.argv[1]) | |
3 output=open(sys.argv[2],'w') | |
4 columntochange=int(sys.argv[3])-1 # default is 6-1=5 | |
5 lines=fd.xreadlines() | |
6 for line in lines: | |
7 temp=line.strip().split('\t') | |
8 temp=filter(None,temp) | |
9 temp2=temp[columntochange].replace(' ','_') | |
10 product=temp[:columntochange] | |
11 product.append(temp2) | |
12 product.extend(temp[columntochange+1:]) | |
13 output.writelines('\t'.join(product)+'\n') | |
14 fd.close() | |
15 output.close() |