Mercurial > repos > arkarachai-fungtammasan > microsatellite_ngs
view changespacetounderscore_readname.py @ 3:7cc220e8c2ac
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author | arkarachai-fungtammasan |
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date | Fri, 24 Oct 2014 15:45:00 -0400 |
parents | 20ab85af9505 |
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import sys fd=open(sys.argv[1]) output=open(sys.argv[2],'w') columntochange=int(sys.argv[3])-1 # default is 6-1=5 lines=fd.xreadlines() for line in lines: temp=line.strip().split('\t') temp=filter(None,temp) temp2=temp[columntochange].replace(' ','_') product=temp[:columntochange] product.append(temp2) product.extend(temp[columntochange+1:]) output.writelines('\t'.join(product)+'\n') fd.close() output.close()