Mercurial > repos > artbio > artbio_mutect2
comparison macros.xml @ 1:2b6ee93fd144 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/artbio_mutect2 commit 5f88428431700b059b950043d24c46ab92e580de"
| author | artbio |
|---|---|
| date | Sat, 09 May 2020 15:08:07 -0400 |
| parents | 504de035ac0f |
| children | 5d9c84514103 |
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| 0:504de035ac0f | 1:2b6ee93fd144 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <token name="@VERSION@">4.1.4.0</token> | 3 <token name="@VERSION@">4.1.4.0</token> |
| 4 <token name="@WRAPPER_VERSION@">@VERSION@+galaxy1</token> | 4 <token name="@WRAPPER_VERSION@">@VERSION@+artbio2</token> |
| 5 | 5 |
| 6 <xml name="requirements"> | 6 <xml name="requirements"> |
| 7 <requirements> | 7 <requirements> |
| 8 <requirement type="package" version="@VERSION@">gatk4</requirement> | 8 <requirement type="package" version="@VERSION@">gatk4</requirement> |
| 9 <requirement type="package" version="0.2.5">tabix</requirement> | 9 <requirement type="package" version="0.2.5">tabix</requirement> |
| 350 #end if | 350 #end if |
| 351 #end for | 351 #end for |
| 352 ]]></template> | 352 ]]></template> |
| 353 | 353 |
| 354 <xml name="gatk_normal_bam_req_params"> | 354 <xml name="gatk_normal_bam_req_params"> |
| 355 <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Tumor BAM/SAM/CRAM file" /> | 355 <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Normal BAM/SAM/CRAM file" /> |
| 356 </xml> | 356 </xml> |
| 357 | 357 |
| 358 <template name="picard_normal_bam_index"><![CDATA[ | 358 <template name="picard_normal_bam_index"><![CDATA[ |
| 359 #if $normal.is_of_type("bam") | 359 #if $normal.is_of_type("bam") |
| 360 ln -s $INPUT normal.bam && | 360 ln -s $INPUT normal.bam && |