Mercurial > repos > artbio > artbio_mutect2
changeset 1:2b6ee93fd144 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/artbio_mutect2 commit 5f88428431700b059b950043d24c46ab92e580de"
| author | artbio |
|---|---|
| date | Sat, 09 May 2020 15:08:07 -0400 |
| parents | 504de035ac0f |
| children | 5d9c84514103 |
| files | artbio_mutect2.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/artbio_mutect2.xml Thu May 07 12:29:36 2020 -0400 +++ b/artbio_mutect2.xml Sat May 09 15:08:07 2020 -0400 @@ -19,7 +19,7 @@ ln -s '$reference_source.reference_sequence' reference.fa && samtools faidx reference.fa && gatk CreateSequenceDictionary --REFERENCE="reference.fa" --OUTPUT="reference.dict" && - #else if str($reference_source.reference_source_selector) == 'history' + #else if str($reference_source.reference_source_selector) == 'cached' ln -s '$reference_source.reference_sequence.fields.path' reference.fa && samtools faidx reference.fa && gatk CreateSequenceDictionary --REFERENCE="reference.fa" --OUTPUT="reference.dict" &&
--- a/macros.xml Thu May 07 12:29:36 2020 -0400 +++ b/macros.xml Sat May 09 15:08:07 2020 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@VERSION@">4.1.4.0</token> - <token name="@WRAPPER_VERSION@">@VERSION@+galaxy1</token> + <token name="@WRAPPER_VERSION@">@VERSION@+artbio2</token> <xml name="requirements"> <requirements> @@ -352,7 +352,7 @@ ]]></template> <xml name="gatk_normal_bam_req_params"> - <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Tumor BAM/SAM/CRAM file" /> + <param name="normal" argument="--normal" type="data" format="bam,sam" label="Input Normal BAM/SAM/CRAM file" /> </xml> <template name="picard_normal_bam_index"><![CDATA[