Mercurial > repos > artbio > gatk4

annotate test-data/filtered_Mutect2-out6_stats.tsv @ 0:c51c08cc9fcc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
author artbio
date Wed, 29 Dec 2021 01:36:41 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
1 #<METADATA>Ln prior of deletion of length 10=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
2 #<METADATA>Ln prior of deletion of length 9=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
3 #<METADATA>Ln prior of deletion of length 8=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
4 #<METADATA>Ln prior of deletion of length 7=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
5 #<METADATA>Ln prior of deletion of length 6=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
6 #<METADATA>Ln prior of deletion of length 5=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
7 #<METADATA>Ln prior of deletion of length 4=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
8 #<METADATA>Ln prior of deletion of length 3=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
9 #<METADATA>Ln prior of deletion of length 2=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
10 #<METADATA>Ln prior of deletion of length 1=-8.055798885543242
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
11 #<METADATA>Ln prior of SNV=-5.222811848329794
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
12 #<METADATA>Ln prior of insertion of length 1=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
13 #<METADATA>Ln prior of insertion of length 2=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
14 #<METADATA>Ln prior of insertion of length 3=-8.055792507842842
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
15 #<METADATA>Ln prior of insertion of length 4=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
16 #<METADATA>Ln prior of insertion of length 5=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
17 #<METADATA>Ln prior of insertion of length 6=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
18 #<METADATA>Ln prior of insertion of length 7=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
19 #<METADATA>Ln prior of insertion of length 8=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
20 #<METADATA>Ln prior of insertion of length 9=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
21 #<METADATA>Ln prior of insertion of length 10=-20.72326583694641
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
22 #<METADATA>Background beta-binomial cluster=weight = 0.4314, alpha = 1.84, beta = 2.65
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
23 #<METADATA>High-AF beta-binomial cluster=weight = 0.0459, alpha = 9.99, beta = 1.03
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
24 #<METADATA>Binomial cluster=weight = 0.5227, mean = 0.237
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
25 #<METADATA>threshold=1.0
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
26 #<METADATA>fdr=0.0
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
27 #<METADATA>sensitivity=1.0
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
28 filter FP FDR FN FNR
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
29 weak_evidence 0.0 0.0 0.0 0.0
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
30 strand_bias 0.0 0.0 0.0 0.0
c51c08cc9fcc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/gatk4 commit 408454e8d10befcc76f38ab446091778537d4f31"
artbio
parents:
diff changeset
31 germline 0.0 0.0 0.0 0.0