Mercurial > repos > artbio > mutational_patterns

comparison test-data/sigmatrix.tab @ 23:83f8c93c34b4 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 3c4d96db0a3c54ed68bf782f08b89b6959255d58"
author artbio
date Wed, 27 Oct 2021 00:46:47 +0000
parents 8182d1625433
children ca6c19ee7da0
comparison
equal deleted inserted replaced
22:00be8f0b2c89 23:83f8c93c34b4
1 substitution context NewSig_1 NewSig_2 NewSig_3 NewSig_4 1 Type SBS1 SBS2 SBS3 SBS4
2 C>A A.A 1.856821e-02 2.482023e-02 1.879304e-02 2.144868e-02 2 A[C>A]A 2.537216e-02 2.002096e-02 1.710480e-02 2.141184e-02
3 C>A A.C 1.985096e-02 8.856811e-03 4.176376e-03 7.275623e-03 3 A[C>A]C 9.450873e-03 1.458332e-02 1.433290e-02 8.146530e-15
4 C>A A.G 4.613707e-03 1.032560e-03 7.399596e-03 1.283205e-03 4 A[C>A]G 2.154737e-06 2.245761e-03 7.951470e-03 3.165761e-03
5 C>A A.T 1.077097e-02 1.152945e-02 1.110411e-02 3.506614e-03 5 A[C>A]T 1.157395e-02 5.815074e-03 1.240409e-02 4.643111e-03
6 C>A C.A 1.234686e-02 1.058479e-02 7.778853e-03 8.511073e-03 6 C[C>A]A 1.088500e-02 1.062103e-02 1.055922e-02 6.408859e-03
7 C>A C.C 1.527507e-02 9.706857e-03 1.091358e-02 3.977471e-03 7 C[C>A]C 9.642499e-03 8.802069e-03 1.580375e-02 2.817272e-03
8 C>A C.G 3.595068e-03 3.053798e-03 1.065706e-03 2.488491e-03 8 C[C>A]G 3.260193e-03 3.291545e-03 2.316976e-03 1.206510e-03
9 C>A C.T 4.654944e-03 1.331055e-02 1.146678e-02 3.015206e-03 9 C[C>A]T 1.342709e-02 1.891337e-03 7.936790e-03 7.279236e-03
10 C>A G.A 5.984606e-03 9.241989e-03 1.639336e-13 1.380331e-02 10 G[C>A]A 1.008899e-02 1.222901e-02 3.142566e-09 9.140614e-03
11 C>A G.C 7.683094e-03 6.339795e-03 8.137271e-03 3.391593e-03 11 G[C>A]C 6.174019e-03 4.836613e-03 9.098106e-03 4.149261e-03
12 C>A G.G 2.406023e-03 3.640987e-03 1.456895e-04 3.942915e-03 12 G[C>A]G 3.986726e-03 3.691483e-03 4.513223e-04 2.546877e-03
13 C>A G.T 1.020608e-02 7.739365e-03 2.399885e-03 4.235560e-03 13 G[C>A]T 8.260710e-03 7.958102e-03 6.964008e-03 1.757568e-06
14 C>A T.A 3.961933e-03 1.275900e-02 1.466472e-02 6.814391e-03 14 T[C>A]A 1.249317e-02 3.585683e-03 8.718414e-03 1.266466e-02
15 C>A T.C 5.337093e-03 1.162648e-02 9.105310e-04 1.013653e-02 15 T[C>A]C 1.291698e-02 8.850082e-03 1.670388e-04 7.329271e-03
16 C>A T.G 1.877937e-03 6.162730e-04 1.878461e-03 6.682628e-04 16 T[C>A]G 5.004928e-04 1.156145e-03 2.337253e-03 7.830488e-04
17 C>A T.T 1.560352e-02 1.326934e-02 1.247051e-02 9.445224e-03 17 T[C>A]T 1.337425e-02 1.214008e-02 1.530841e-02 8.418327e-03
18 C>G A.A 1.972775e-02 1.228149e-02 1.195633e-02 1.727448e-02 18 A[C>G]A 1.237441e-02 1.981081e-02 1.653601e-02 1.304232e-02
19 C>G A.C 5.836059e-03 1.655810e-03 1.694621e-02 9.062109e-07 19 A[C>G]C 7.834505e-16 3.248220e-10 1.572297e-02 6.551608e-03
20 C>G A.G 5.200216e-03 2.559643e-03 3.166565e-03 1.532897e-03 20 A[C>G]G 2.523774e-03 3.253406e-03 5.114731e-03 7.858234e-04
21 C>G A.T 9.324164e-03 1.095739e-02 1.081958e-02 6.258396e-03 21 A[C>G]T 1.096100e-02 6.928247e-03 1.066230e-02 7.532280e-03
22 C>G C.A 5.617809e-03 9.345902e-03 8.284139e-03 3.880938e-03 22 C[C>G]A 9.424413e-03 3.782759e-03 7.078604e-03 5.700867e-03
23 C>G C.C 3.534086e-20 8.210895e-03 7.727184e-03 2.254830e-03 23 C[C>G]C 8.549212e-03 3.674810e-20 1.851021e-03 7.246756e-03
24 C>G C.G 2.262327e-03 7.340603e-03 3.022013e-03 9.156563e-05 24 C[C>G]G 7.748336e-03 3.487494e-04 2.371674e-03 9.595624e-04
25 C>G C.T 8.224646e-03 5.017294e-03 7.003901e-04 8.665738e-03 25 C[C>G]T 5.480175e-03 9.922058e-03 3.885279e-03 4.326614e-03
26 C>G G.A 6.954941e-03 1.139806e-02 4.622361e-03 3.514270e-20 26 G[C>G]A 1.157248e-02 1.370895e-03 7.806339e-03 3.108266e-20
27 C>G G.C 7.064656e-04 6.998058e-03 2.537477e-03 3.965493e-03 27 G[C>G]C 7.420157e-03 2.171773e-03 1.284785e-04 4.770442e-03
28 C>G G.G 3.080436e-03 3.328074e-03 2.929015e-03 1.461945e-04 28 G[C>G]G 3.372856e-03 1.135636e-03 3.554018e-03 4.457136e-04
29 C>G G.T 6.360999e-03 8.512373e-03 9.008932e-03 2.005772e-03 29 G[C>G]T 8.449691e-03 2.887116e-03 8.619063e-03 4.100463e-03
30 C>G T.A 5.553775e-03 1.062558e-02 9.424149e-03 4.924035e-03 30 T[C>G]A 1.070613e-02 4.177331e-03 7.325655e-03 7.313308e-03
31 C>G T.C 5.248185e-03 7.233109e-03 9.634964e-03 4.359934e-03 31 T[C>G]C 6.976389e-03 3.829361e-03 7.894157e-03 6.971152e-03
32 C>G T.G 1.845306e-03 2.417185e-03 6.595859e-03 6.782687e-04 32 T[C>G]G 1.997729e-03 1.042906e-04 5.183138e-03 3.550364e-03
33 C>G T.T 1.587889e-02 2.049222e-02 3.439640e-02 5.050564e-03 33 T[C>G]T 1.906704e-02 5.403760e-03 2.917595e-02 1.685698e-02
34 C>T A.A 3.911250e-02 3.225079e-02 4.206848e-02 3.385188e-02 34 A[C>T]A 3.131895e-02 3.559289e-02 4.320756e-02 3.595643e-02
35 C>T A.C 8.757053e-03 1.352629e-02 6.991724e-03 1.974727e-02 35 A[C>T]C 1.413245e-02 1.602975e-02 4.547827e-03 1.754285e-02
36 C>T A.G 5.231138e-02 1.925044e-07 3.026394e-03 6.399169e-02 36 A[C>T]G 3.979119e-05 7.124023e-02 2.719950e-02 3.367261e-02
37 C>T A.T 1.874677e-02 1.836710e-02 1.620182e-02 1.541248e-02 37 A[C>T]T 1.859032e-02 1.694007e-02 1.791330e-02 1.441652e-02
38 C>T C.A 1.408680e-02 9.572305e-03 1.224985e-02 1.529038e-02 38 C[C>T]A 9.334568e-03 1.548055e-02 1.339818e-02 1.398155e-02
39 C>T C.C 1.412526e-02 1.293054e-02 7.720717e-03 1.618405e-02 39 C[C>T]C 1.346106e-02 1.657747e-02 9.838139e-03 1.233688e-02
40 C>T C.G 2.458679e-02 1.097265e-02 2.704009e-03 4.320455e-02 40 C[C>T]G 1.184973e-02 4.118642e-02 9.104291e-03 2.848006e-02
41 C>T C.T 1.682814e-02 1.962601e-02 2.870932e-02 2.757164e-02 41 C[C>T]T 1.867309e-02 2.194293e-02 2.160789e-02 3.289596e-02
42 C>T G.A 1.501424e-02 1.146890e-02 4.373561e-03 1.710170e-02 42 G[C>T]A 1.220901e-02 1.830932e-02 8.420540e-03 1.082556e-02
43 C>T G.C 8.581633e-03 1.197143e-02 1.469853e-02 1.798870e-02 43 G[C>T]C 1.165663e-02 1.366817e-02 9.906539e-03 2.030184e-02
44 C>T G.G 2.050911e-02 2.694316e-02 1.193358e-02 4.080066e-02 44 G[C>T]G 2.837739e-02 3.492253e-02 9.763772e-03 3.371439e-02
45 C>T G.T 6.725450e-03 1.485333e-02 2.022066e-02 1.821305e-02 45 G[C>T]T 1.423362e-02 1.172648e-02 1.151020e-02 2.449816e-02
46 C>T T.A 9.790349e-03 7.433059e-03 1.994759e-02 1.263779e-02 46 T[C>T]A 6.181812e-03 1.026000e-02 1.598478e-02 1.784120e-02
47 C>T T.C 1.594645e-02 1.460332e-02 1.802766e-02 1.886875e-02 47 T[C>T]C 1.426343e-02 1.765650e-02 1.686071e-02 1.961689e-02
48 C>T T.G 2.019449e-02 4.552012e-04 8.162605e-12 2.690217e-02 48 T[C>T]G 6.697405e-04 2.981773e-02 8.807199e-03 1.357187e-02
49 C>T T.T 3.604766e-02 3.365274e-02 2.789390e-02 2.769743e-02 49 T[C>T]T 3.425831e-02 3.190586e-02 3.306195e-02 2.416517e-02
50 T>A A.A 1.765667e-02 1.321109e-02 1.065894e-02 1.583119e-02 50 A[T>A]A 1.350407e-02 1.783317e-02 1.433952e-02 1.204297e-02
51 T>A A.C 1.820098e-03 5.510611e-03 8.183147e-03 4.599082e-03 51 A[T>A]C 5.208908e-03 2.426998e-03 4.661406e-03 7.889899e-03
52 T>A A.G 4.665541e-03 6.215514e-03 6.135328e-03 1.001896e-02 52 A[T>A]G 6.203645e-03 7.899487e-03 4.210160e-03 1.020936e-02
53 T>A A.T 9.785657e-03 1.833578e-02 1.768249e-02 1.248205e-02 53 A[T>A]T 1.832951e-02 9.760497e-03 1.283916e-02 1.679321e-02
54 T>A C.A 4.242335e-03 5.517088e-03 9.041105e-03 3.634763e-03 54 C[T>A]A 5.152894e-03 2.995165e-03 7.202406e-03 6.415967e-03
55 T>A C.C 8.948010e-03 1.166917e-02 2.179799e-05 1.148913e-02 55 C[T>A]C 1.288517e-02 1.197751e-02 2.199823e-03 6.184057e-03
56 T>A C.G 2.492456e-03 9.694116e-03 4.293775e-03 5.700343e-03 56 C[T>A]G 1.017668e-02 3.858590e-03 1.797496e-03 6.521194e-03
57 T>A C.T 2.882218e-03 1.297743e-02 1.071267e-02 1.009712e-02 57 C[T>A]T 1.311494e-02 5.783272e-03 4.684082e-03 1.384174e-02
58 T>A G.A 3.223737e-03 6.245735e-03 5.842451e-03 9.200857e-04 58 G[T>A]A 6.264117e-03 1.063500e-03 4.890578e-03 2.764218e-03
59 T>A G.C 2.805377e-03 1.213230e-03 5.828460e-03 1.503090e-03 59 G[T>A]C 7.583102e-04 1.569458e-03 5.251988e-03 3.297294e-03
60 T>A G.G 6.898206e-03 7.300718e-03 8.003532e-03 1.222177e-02 60 G[T>A]G 7.218613e-03 1.024681e-02 6.403638e-03 1.217812e-02
61 T>A G.T 9.120314e-03 1.347850e-02 3.249901e-03 7.453304e-03 61 G[T>A]T 1.447924e-02 8.632744e-03 5.062681e-03 4.542537e-03
62 T>A T.A 1.622536e-02 6.931133e-03 9.627554e-03 1.174564e-02 62 T[T>A]A 6.737527e-03 1.490078e-02 1.449887e-02 8.361527e-03
63 T>A T.C 6.760912e-03 5.595476e-03 9.698282e-04 5.499357e-03 63 T[T>A]C 6.075934e-03 6.914890e-03 3.547468e-03 2.400262e-03
64 T>A T.G 1.866485e-03 8.652201e-03 2.256983e-03 3.519494e-03 64 T[T>A]G 9.247980e-03 2.446205e-03 6.669669e-04 3.742054e-03
65 T>A T.T 2.145214e-02 3.177788e-02 1.505847e-02 1.981508e-02 65 T[T>A]T 3.338055e-02 2.065066e-02 1.611251e-02 1.680514e-02
66 T>C A.A 4.427759e-02 3.786828e-02 4.544423e-02 2.650778e-02 66 A[T>C]A 3.717380e-02 3.265699e-02 4.982621e-02 2.922387e-02
67 T>C A.C 8.998306e-03 4.599474e-03 1.004905e-02 8.722935e-03 67 A[T>C]C 4.082749e-03 8.947616e-03 1.042822e-02 9.205745e-03
68 T>C A.G 2.243087e-02 6.118842e-03 1.134205e-02 1.802892e-02 68 A[T>C]G 5.725035e-03 2.233932e-02 1.897642e-02 1.192167e-02
69 T>C A.T 1.373384e-02 9.886587e-03 1.685322e-02 1.176445e-02 69 A[T>C]T 9.216111e-03 1.218855e-02 1.674300e-02 1.362895e-02
70 T>C C.A 8.656233e-03 9.072748e-03 8.862799e-03 6.112781e-03 70 C[T>C]A 9.092771e-03 6.894784e-03 9.263013e-03 6.566154e-03
71 T>C C.C 8.714585e-03 1.690442e-02 3.565029e-03 9.871972e-03 71 C[T>C]C 1.818673e-02 9.733987e-03 3.899203e-03 7.127605e-03
72 T>C C.G 1.071206e-02 1.004291e-02 1.850434e-02 7.540034e-03 72 C[T>C]G 9.199519e-03 7.413690e-03 1.642174e-02 1.224971e-02
73 T>C C.T 1.017263e-02 1.448259e-02 2.608108e-02 1.403170e-02 73 C[T>C]T 1.327566e-02 9.959621e-03 1.871874e-02 2.250458e-02
74 T>C G.A 5.126616e-03 1.108508e-02 8.768450e-03 1.036693e-02 74 G[T>C]A 1.126406e-02 7.644979e-03 5.362476e-03 1.191308e-02
75 T>C G.C 5.204634e-12 5.747845e-03 3.143501e-03 8.849255e-03 75 G[T>C]C 5.382469e-03 4.828479e-03 1.970185e-12 9.597621e-03
76 T>C G.G 1.669831e-02 1.133208e-02 1.267705e-02 1.603702e-02 76 G[T>C]G 1.123791e-02 1.724741e-02 1.516244e-02 1.372539e-02
77 T>C G.T 8.671437e-03 1.325475e-02 1.721725e-02 5.039773e-03 77 G[T>C]T 1.282307e-02 4.586347e-03 1.411896e-02 1.039154e-02
78 T>C T.A 6.260030e-03 1.102551e-02 1.167533e-02 7.016389e-03 78 T[T>C]A 1.092086e-02 5.588158e-03 8.761926e-03 1.007685e-02
79 T>C T.C 1.517718e-02 1.699912e-02 6.470473e-03 2.077129e-02 79 T[T>C]C 1.803799e-02 2.013810e-02 8.203282e-03 1.529979e-02
80 T>C T.G 9.336917e-03 8.764205e-03 1.160437e-02 2.331889e-03 80 T[T>C]G 8.490634e-03 4.340314e-03 1.235122e-02 4.467692e-03
81 T>C T.T 1.903513e-02 3.432098e-02 5.540849e-02 2.562376e-02 81 T[T>C]T 3.206972e-02 1.668243e-02 3.818623e-02 4.544754e-02
82 T>G A.A 3.993541e-03 4.978625e-03 8.356632e-03 1.578506e-02 82 A[T>G]A 4.607840e-03 1.111060e-02 4.088577e-03 1.675423e-02
83 T>G A.C 1.728186e-03 3.099935e-20 6.777648e-15 3.511484e-03 83 A[T>G]C 2.785895e-20 3.406825e-03 4.944014e-04 2.164564e-03
84 T>G A.G 5.502959e-03 8.711266e-03 5.367147e-03 2.059172e-03 84 A[T>G]G 9.026035e-03 3.004937e-03 5.635912e-03 2.524956e-03
85 T>G A.T 1.499753e-03 4.210842e-03 3.978567e-03 7.977656e-03 85 A[T>G]T 4.203199e-03 5.247793e-03 1.255466e-03 8.623252e-03
86 T>G C.A 3.534086e-20 4.234149e-16 8.909125e-03 1.246735e-03 86 C[T>G]A 2.785895e-20 3.674810e-20 3.467823e-03 6.471005e-03
87 T>G C.C 1.909719e-03 6.194908e-03 2.037866e-03 5.448839e-04 87 C[T>G]C 6.581920e-03 6.843904e-04 1.594754e-03 9.266438e-04
88 T>G C.G 7.443573e-03 2.206694e-03 4.942085e-03 2.758675e-03 88 C[T>G]G 1.978907e-03 5.066625e-03 7.694784e-03 1.800258e-03
89 T>G C.T 7.417469e-03 1.454301e-03 5.521245e-03 5.632697e-19 89 C[T>G]T 1.094034e-03 2.834946e-03 8.971833e-03 3.108266e-20
90 T>G G.A 4.032749e-03 2.126988e-03 2.146375e-03 9.845592e-04 90 G[T>G]A 2.124062e-03 2.575322e-03 3.809196e-03 5.453246e-06
91 T>G G.C 2.308308e-03 3.091434e-03 3.322218e-20 3.632777e-03 91 G[T>G]C 3.641890e-03 3.851018e-03 2.472880e-06 1.886510e-03
92 T>G G.G 8.852942e-03 9.064804e-03 1.199615e-02 7.843944e-03 92 G[T>G]G 8.768503e-03 7.669052e-03 1.102237e-02 9.725885e-03
93 T>G G.T 4.276432e-03 1.084606e-02 1.101937e-02 9.425060e-03 93 G[T>G]T 1.076981e-02 6.207912e-03 6.393167e-03 1.271972e-02
94 T>G T.A 2.351390e-03 8.100255e-03 3.683601e-03 3.923489e-03 94 T[T>G]A 8.496984e-03 2.798437e-03 1.940681e-03 4.645137e-03
95 T>G T.C 5.580464e-03 2.444033e-03 5.806015e-03 5.018502e-03 95 T[T>G]C 2.128895e-03 5.382631e-03 6.346618e-03 5.118158e-03
96 T>G T.G 1.287955e-02 1.265933e-02 1.969184e-02 4.871262e-03 96 T[T>G]G 1.196188e-02 6.471983e-03 1.892812e-02 9.668990e-03
97 T>G T.T 3.545360e-02 2.295036e-02 2.946636e-02 1.477102e-02 97 T[T>G]T 2.241590e-02 2.343561e-02 3.806567e-02 1.368935e-02