view test-data/sigmatrix.tab @ 23:83f8c93c34b4 draft default tip

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 3c4d96db0a3c54ed68bf782f08b89b6959255d58"
author artbio
date Wed, 27 Oct 2021 00:46:47 +0000
parents 8182d1625433
children
line wrap: on
line source

Type	SBS1	SBS2	SBS3	SBS4
A[C>A]A	2.537216e-02	2.002096e-02	1.710480e-02	2.141184e-02
A[C>A]C	9.450873e-03	1.458332e-02	1.433290e-02	8.146530e-15
A[C>A]G	2.154737e-06	2.245761e-03	7.951470e-03	3.165761e-03
A[C>A]T	1.157395e-02	5.815074e-03	1.240409e-02	4.643111e-03
C[C>A]A	1.088500e-02	1.062103e-02	1.055922e-02	6.408859e-03
C[C>A]C	9.642499e-03	8.802069e-03	1.580375e-02	2.817272e-03
C[C>A]G	3.260193e-03	3.291545e-03	2.316976e-03	1.206510e-03
C[C>A]T	1.342709e-02	1.891337e-03	7.936790e-03	7.279236e-03
G[C>A]A	1.008899e-02	1.222901e-02	3.142566e-09	9.140614e-03
G[C>A]C	6.174019e-03	4.836613e-03	9.098106e-03	4.149261e-03
G[C>A]G	3.986726e-03	3.691483e-03	4.513223e-04	2.546877e-03
G[C>A]T	8.260710e-03	7.958102e-03	6.964008e-03	1.757568e-06
T[C>A]A	1.249317e-02	3.585683e-03	8.718414e-03	1.266466e-02
T[C>A]C	1.291698e-02	8.850082e-03	1.670388e-04	7.329271e-03
T[C>A]G	5.004928e-04	1.156145e-03	2.337253e-03	7.830488e-04
T[C>A]T	1.337425e-02	1.214008e-02	1.530841e-02	8.418327e-03
A[C>G]A	1.237441e-02	1.981081e-02	1.653601e-02	1.304232e-02
A[C>G]C	7.834505e-16	3.248220e-10	1.572297e-02	6.551608e-03
A[C>G]G	2.523774e-03	3.253406e-03	5.114731e-03	7.858234e-04
A[C>G]T	1.096100e-02	6.928247e-03	1.066230e-02	7.532280e-03
C[C>G]A	9.424413e-03	3.782759e-03	7.078604e-03	5.700867e-03
C[C>G]C	8.549212e-03	3.674810e-20	1.851021e-03	7.246756e-03
C[C>G]G	7.748336e-03	3.487494e-04	2.371674e-03	9.595624e-04
C[C>G]T	5.480175e-03	9.922058e-03	3.885279e-03	4.326614e-03
G[C>G]A	1.157248e-02	1.370895e-03	7.806339e-03	3.108266e-20
G[C>G]C	7.420157e-03	2.171773e-03	1.284785e-04	4.770442e-03
G[C>G]G	3.372856e-03	1.135636e-03	3.554018e-03	4.457136e-04
G[C>G]T	8.449691e-03	2.887116e-03	8.619063e-03	4.100463e-03
T[C>G]A	1.070613e-02	4.177331e-03	7.325655e-03	7.313308e-03
T[C>G]C	6.976389e-03	3.829361e-03	7.894157e-03	6.971152e-03
T[C>G]G	1.997729e-03	1.042906e-04	5.183138e-03	3.550364e-03
T[C>G]T	1.906704e-02	5.403760e-03	2.917595e-02	1.685698e-02
A[C>T]A	3.131895e-02	3.559289e-02	4.320756e-02	3.595643e-02
A[C>T]C	1.413245e-02	1.602975e-02	4.547827e-03	1.754285e-02
A[C>T]G	3.979119e-05	7.124023e-02	2.719950e-02	3.367261e-02
A[C>T]T	1.859032e-02	1.694007e-02	1.791330e-02	1.441652e-02
C[C>T]A	9.334568e-03	1.548055e-02	1.339818e-02	1.398155e-02
C[C>T]C	1.346106e-02	1.657747e-02	9.838139e-03	1.233688e-02
C[C>T]G	1.184973e-02	4.118642e-02	9.104291e-03	2.848006e-02
C[C>T]T	1.867309e-02	2.194293e-02	2.160789e-02	3.289596e-02
G[C>T]A	1.220901e-02	1.830932e-02	8.420540e-03	1.082556e-02
G[C>T]C	1.165663e-02	1.366817e-02	9.906539e-03	2.030184e-02
G[C>T]G	2.837739e-02	3.492253e-02	9.763772e-03	3.371439e-02
G[C>T]T	1.423362e-02	1.172648e-02	1.151020e-02	2.449816e-02
T[C>T]A	6.181812e-03	1.026000e-02	1.598478e-02	1.784120e-02
T[C>T]C	1.426343e-02	1.765650e-02	1.686071e-02	1.961689e-02
T[C>T]G	6.697405e-04	2.981773e-02	8.807199e-03	1.357187e-02
T[C>T]T	3.425831e-02	3.190586e-02	3.306195e-02	2.416517e-02
A[T>A]A	1.350407e-02	1.783317e-02	1.433952e-02	1.204297e-02
A[T>A]C	5.208908e-03	2.426998e-03	4.661406e-03	7.889899e-03
A[T>A]G	6.203645e-03	7.899487e-03	4.210160e-03	1.020936e-02
A[T>A]T	1.832951e-02	9.760497e-03	1.283916e-02	1.679321e-02
C[T>A]A	5.152894e-03	2.995165e-03	7.202406e-03	6.415967e-03
C[T>A]C	1.288517e-02	1.197751e-02	2.199823e-03	6.184057e-03
C[T>A]G	1.017668e-02	3.858590e-03	1.797496e-03	6.521194e-03
C[T>A]T	1.311494e-02	5.783272e-03	4.684082e-03	1.384174e-02
G[T>A]A	6.264117e-03	1.063500e-03	4.890578e-03	2.764218e-03
G[T>A]C	7.583102e-04	1.569458e-03	5.251988e-03	3.297294e-03
G[T>A]G	7.218613e-03	1.024681e-02	6.403638e-03	1.217812e-02
G[T>A]T	1.447924e-02	8.632744e-03	5.062681e-03	4.542537e-03
T[T>A]A	6.737527e-03	1.490078e-02	1.449887e-02	8.361527e-03
T[T>A]C	6.075934e-03	6.914890e-03	3.547468e-03	2.400262e-03
T[T>A]G	9.247980e-03	2.446205e-03	6.669669e-04	3.742054e-03
T[T>A]T	3.338055e-02	2.065066e-02	1.611251e-02	1.680514e-02
A[T>C]A	3.717380e-02	3.265699e-02	4.982621e-02	2.922387e-02
A[T>C]C	4.082749e-03	8.947616e-03	1.042822e-02	9.205745e-03
A[T>C]G	5.725035e-03	2.233932e-02	1.897642e-02	1.192167e-02
A[T>C]T	9.216111e-03	1.218855e-02	1.674300e-02	1.362895e-02
C[T>C]A	9.092771e-03	6.894784e-03	9.263013e-03	6.566154e-03
C[T>C]C	1.818673e-02	9.733987e-03	3.899203e-03	7.127605e-03
C[T>C]G	9.199519e-03	7.413690e-03	1.642174e-02	1.224971e-02
C[T>C]T	1.327566e-02	9.959621e-03	1.871874e-02	2.250458e-02
G[T>C]A	1.126406e-02	7.644979e-03	5.362476e-03	1.191308e-02
G[T>C]C	5.382469e-03	4.828479e-03	1.970185e-12	9.597621e-03
G[T>C]G	1.123791e-02	1.724741e-02	1.516244e-02	1.372539e-02
G[T>C]T	1.282307e-02	4.586347e-03	1.411896e-02	1.039154e-02
T[T>C]A	1.092086e-02	5.588158e-03	8.761926e-03	1.007685e-02
T[T>C]C	1.803799e-02	2.013810e-02	8.203282e-03	1.529979e-02
T[T>C]G	8.490634e-03	4.340314e-03	1.235122e-02	4.467692e-03
T[T>C]T	3.206972e-02	1.668243e-02	3.818623e-02	4.544754e-02
A[T>G]A	4.607840e-03	1.111060e-02	4.088577e-03	1.675423e-02
A[T>G]C	2.785895e-20	3.406825e-03	4.944014e-04	2.164564e-03
A[T>G]G	9.026035e-03	3.004937e-03	5.635912e-03	2.524956e-03
A[T>G]T	4.203199e-03	5.247793e-03	1.255466e-03	8.623252e-03
C[T>G]A	2.785895e-20	3.674810e-20	3.467823e-03	6.471005e-03
C[T>G]C	6.581920e-03	6.843904e-04	1.594754e-03	9.266438e-04
C[T>G]G	1.978907e-03	5.066625e-03	7.694784e-03	1.800258e-03
C[T>G]T	1.094034e-03	2.834946e-03	8.971833e-03	3.108266e-20
G[T>G]A	2.124062e-03	2.575322e-03	3.809196e-03	5.453246e-06
G[T>G]C	3.641890e-03	3.851018e-03	2.472880e-06	1.886510e-03
G[T>G]G	8.768503e-03	7.669052e-03	1.102237e-02	9.725885e-03
G[T>G]T	1.076981e-02	6.207912e-03	6.393167e-03	1.271972e-02
T[T>G]A	8.496984e-03	2.798437e-03	1.940681e-03	4.645137e-03
T[T>G]C	2.128895e-03	5.382631e-03	6.346618e-03	5.118158e-03
T[T>G]G	1.196188e-02	6.471983e-03	1.892812e-02	9.668990e-03
T[T>G]T	2.241590e-02	2.343561e-02	3.806567e-02	1.368935e-02