Mercurial > repos > artbio > mutational_patterns

view test-data/sigmatrix.tab @ 16:31e7a33ecd71 draft

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"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 9deb533aabc9dc24bb88b98c57e242785142df75"
author artbio
date Mon, 04 Oct 2021 00:35:06 +0000
parents 8182d1625433
children 83f8c93c34b4
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line source

substitution	context	NewSig_1	NewSig_2	NewSig_3	NewSig_4
C>A	A.A	1.856821e-02	2.482023e-02	1.879304e-02	2.144868e-02
C>A	A.C	1.985096e-02	8.856811e-03	4.176376e-03	7.275623e-03
C>A	A.G	4.613707e-03	1.032560e-03	7.399596e-03	1.283205e-03
C>A	A.T	1.077097e-02	1.152945e-02	1.110411e-02	3.506614e-03
C>A	C.A	1.234686e-02	1.058479e-02	7.778853e-03	8.511073e-03
C>A	C.C	1.527507e-02	9.706857e-03	1.091358e-02	3.977471e-03
C>A	C.G	3.595068e-03	3.053798e-03	1.065706e-03	2.488491e-03
C>A	C.T	4.654944e-03	1.331055e-02	1.146678e-02	3.015206e-03
C>A	G.A	5.984606e-03	9.241989e-03	1.639336e-13	1.380331e-02
C>A	G.C	7.683094e-03	6.339795e-03	8.137271e-03	3.391593e-03
C>A	G.G	2.406023e-03	3.640987e-03	1.456895e-04	3.942915e-03
C>A	G.T	1.020608e-02	7.739365e-03	2.399885e-03	4.235560e-03
C>A	T.A	3.961933e-03	1.275900e-02	1.466472e-02	6.814391e-03
C>A	T.C	5.337093e-03	1.162648e-02	9.105310e-04	1.013653e-02
C>A	T.G	1.877937e-03	6.162730e-04	1.878461e-03	6.682628e-04
C>A	T.T	1.560352e-02	1.326934e-02	1.247051e-02	9.445224e-03
C>G	A.A	1.972775e-02	1.228149e-02	1.195633e-02	1.727448e-02
C>G	A.C	5.836059e-03	1.655810e-03	1.694621e-02	9.062109e-07
C>G	A.G	5.200216e-03	2.559643e-03	3.166565e-03	1.532897e-03
C>G	A.T	9.324164e-03	1.095739e-02	1.081958e-02	6.258396e-03
C>G	C.A	5.617809e-03	9.345902e-03	8.284139e-03	3.880938e-03
C>G	C.C	3.534086e-20	8.210895e-03	7.727184e-03	2.254830e-03
C>G	C.G	2.262327e-03	7.340603e-03	3.022013e-03	9.156563e-05
C>G	C.T	8.224646e-03	5.017294e-03	7.003901e-04	8.665738e-03
C>G	G.A	6.954941e-03	1.139806e-02	4.622361e-03	3.514270e-20
C>G	G.C	7.064656e-04	6.998058e-03	2.537477e-03	3.965493e-03
C>G	G.G	3.080436e-03	3.328074e-03	2.929015e-03	1.461945e-04
C>G	G.T	6.360999e-03	8.512373e-03	9.008932e-03	2.005772e-03
C>G	T.A	5.553775e-03	1.062558e-02	9.424149e-03	4.924035e-03
C>G	T.C	5.248185e-03	7.233109e-03	9.634964e-03	4.359934e-03
C>G	T.G	1.845306e-03	2.417185e-03	6.595859e-03	6.782687e-04
C>G	T.T	1.587889e-02	2.049222e-02	3.439640e-02	5.050564e-03
C>T	A.A	3.911250e-02	3.225079e-02	4.206848e-02	3.385188e-02
C>T	A.C	8.757053e-03	1.352629e-02	6.991724e-03	1.974727e-02
C>T	A.G	5.231138e-02	1.925044e-07	3.026394e-03	6.399169e-02
C>T	A.T	1.874677e-02	1.836710e-02	1.620182e-02	1.541248e-02
C>T	C.A	1.408680e-02	9.572305e-03	1.224985e-02	1.529038e-02
C>T	C.C	1.412526e-02	1.293054e-02	7.720717e-03	1.618405e-02
C>T	C.G	2.458679e-02	1.097265e-02	2.704009e-03	4.320455e-02
C>T	C.T	1.682814e-02	1.962601e-02	2.870932e-02	2.757164e-02
C>T	G.A	1.501424e-02	1.146890e-02	4.373561e-03	1.710170e-02
C>T	G.C	8.581633e-03	1.197143e-02	1.469853e-02	1.798870e-02
C>T	G.G	2.050911e-02	2.694316e-02	1.193358e-02	4.080066e-02
C>T	G.T	6.725450e-03	1.485333e-02	2.022066e-02	1.821305e-02
C>T	T.A	9.790349e-03	7.433059e-03	1.994759e-02	1.263779e-02
C>T	T.C	1.594645e-02	1.460332e-02	1.802766e-02	1.886875e-02
C>T	T.G	2.019449e-02	4.552012e-04	8.162605e-12	2.690217e-02
C>T	T.T	3.604766e-02	3.365274e-02	2.789390e-02	2.769743e-02
T>A	A.A	1.765667e-02	1.321109e-02	1.065894e-02	1.583119e-02
T>A	A.C	1.820098e-03	5.510611e-03	8.183147e-03	4.599082e-03
T>A	A.G	4.665541e-03	6.215514e-03	6.135328e-03	1.001896e-02
T>A	A.T	9.785657e-03	1.833578e-02	1.768249e-02	1.248205e-02
T>A	C.A	4.242335e-03	5.517088e-03	9.041105e-03	3.634763e-03
T>A	C.C	8.948010e-03	1.166917e-02	2.179799e-05	1.148913e-02
T>A	C.G	2.492456e-03	9.694116e-03	4.293775e-03	5.700343e-03
T>A	C.T	2.882218e-03	1.297743e-02	1.071267e-02	1.009712e-02
T>A	G.A	3.223737e-03	6.245735e-03	5.842451e-03	9.200857e-04
T>A	G.C	2.805377e-03	1.213230e-03	5.828460e-03	1.503090e-03
T>A	G.G	6.898206e-03	7.300718e-03	8.003532e-03	1.222177e-02
T>A	G.T	9.120314e-03	1.347850e-02	3.249901e-03	7.453304e-03
T>A	T.A	1.622536e-02	6.931133e-03	9.627554e-03	1.174564e-02
T>A	T.C	6.760912e-03	5.595476e-03	9.698282e-04	5.499357e-03
T>A	T.G	1.866485e-03	8.652201e-03	2.256983e-03	3.519494e-03
T>A	T.T	2.145214e-02	3.177788e-02	1.505847e-02	1.981508e-02
T>C	A.A	4.427759e-02	3.786828e-02	4.544423e-02	2.650778e-02
T>C	A.C	8.998306e-03	4.599474e-03	1.004905e-02	8.722935e-03
T>C	A.G	2.243087e-02	6.118842e-03	1.134205e-02	1.802892e-02
T>C	A.T	1.373384e-02	9.886587e-03	1.685322e-02	1.176445e-02
T>C	C.A	8.656233e-03	9.072748e-03	8.862799e-03	6.112781e-03
T>C	C.C	8.714585e-03	1.690442e-02	3.565029e-03	9.871972e-03
T>C	C.G	1.071206e-02	1.004291e-02	1.850434e-02	7.540034e-03
T>C	C.T	1.017263e-02	1.448259e-02	2.608108e-02	1.403170e-02
T>C	G.A	5.126616e-03	1.108508e-02	8.768450e-03	1.036693e-02
T>C	G.C	5.204634e-12	5.747845e-03	3.143501e-03	8.849255e-03
T>C	G.G	1.669831e-02	1.133208e-02	1.267705e-02	1.603702e-02
T>C	G.T	8.671437e-03	1.325475e-02	1.721725e-02	5.039773e-03
T>C	T.A	6.260030e-03	1.102551e-02	1.167533e-02	7.016389e-03
T>C	T.C	1.517718e-02	1.699912e-02	6.470473e-03	2.077129e-02
T>C	T.G	9.336917e-03	8.764205e-03	1.160437e-02	2.331889e-03
T>C	T.T	1.903513e-02	3.432098e-02	5.540849e-02	2.562376e-02
T>G	A.A	3.993541e-03	4.978625e-03	8.356632e-03	1.578506e-02
T>G	A.C	1.728186e-03	3.099935e-20	6.777648e-15	3.511484e-03
T>G	A.G	5.502959e-03	8.711266e-03	5.367147e-03	2.059172e-03
T>G	A.T	1.499753e-03	4.210842e-03	3.978567e-03	7.977656e-03
T>G	C.A	3.534086e-20	4.234149e-16	8.909125e-03	1.246735e-03
T>G	C.C	1.909719e-03	6.194908e-03	2.037866e-03	5.448839e-04
T>G	C.G	7.443573e-03	2.206694e-03	4.942085e-03	2.758675e-03
T>G	C.T	7.417469e-03	1.454301e-03	5.521245e-03	5.632697e-19
T>G	G.A	4.032749e-03	2.126988e-03	2.146375e-03	9.845592e-04
T>G	G.C	2.308308e-03	3.091434e-03	3.322218e-20	3.632777e-03
T>G	G.G	8.852942e-03	9.064804e-03	1.199615e-02	7.843944e-03
T>G	G.T	4.276432e-03	1.084606e-02	1.101937e-02	9.425060e-03
T>G	T.A	2.351390e-03	8.100255e-03	3.683601e-03	3.923489e-03
T>G	T.C	5.580464e-03	2.444033e-03	5.806015e-03	5.018502e-03
T>G	T.G	1.287955e-02	1.265933e-02	1.969184e-02	4.871262e-03
T>G	T.T	3.545360e-02	2.295036e-02	2.946636e-02	1.477102e-02