view test-data/sigmatrix.tab @ 10:59c0e2a7965c draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit 533394bd219d56cde7fb9721803e8aed8fd5a25d"
author artbio
date Mon, 19 Oct 2020 23:34:58 +0000
parents e332cf9dfa06
children 8182d1625433
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substitution	context	NewSig_1	NewSig_2	NewSig_3	NewSig_4
C>A	A.A	2.012349e-02	2.099063e-02	1.788529e-02	2.529973e-02
C>A	A.C	1.232623e-02	5.099845e-05	2.019020e-02	8.344265e-03
C>A	A.G	2.056317e-03	5.061512e-03	5.110667e-03	5.598599e-04
C>A	A.T	4.276274e-03	7.030586e-03	1.433976e-02	9.044799e-03
C>A	C.A	9.858499e-03	6.774294e-03	1.254817e-02	1.109854e-02
C>A	C.C	7.182083e-03	5.137412e-03	1.754580e-02	7.871756e-03
C>A	C.G	3.071657e-03	7.744685e-04	3.478215e-03	3.033573e-03
C>A	C.T	9.805120e-04	1.022892e-02	8.612445e-03	1.089991e-02
C>A	G.A	1.295094e-02	5.191677e-03	2.838657e-03	1.229298e-02
C>A	G.C	4.262714e-03	5.183579e-03	8.941540e-03	5.390685e-03
C>A	G.G	3.769228e-03	1.557726e-03	1.699600e-03	3.945304e-03
C>A	G.T	6.573060e-03	1.031818e-04	1.059791e-02	7.185424e-03
C>A	T.A	3.862713e-03	1.624881e-02	5.519485e-03	1.246359e-02
C>A	T.C	8.824563e-03	6.792814e-03	4.042968e-03	1.212436e-02
C>A	T.G	1.024188e-03	9.815808e-04	2.029646e-03	1.087012e-03
C>A	T.T	1.181704e-02	9.618044e-03	1.665114e-02	1.307952e-02
C>G	A.A	1.983228e-02	1.270519e-02	1.655687e-02	1.398506e-02
C>G	A.C	4.742892e-11	1.043116e-02	9.102239e-03	2.314023e-20
C>G	A.G	2.906055e-03	1.687383e-03	5.265593e-03	2.218107e-03
C>G	A.T	6.407465e-03	8.581278e-03	1.079483e-02	9.668306e-03
C>G	C.A	3.411641e-03	6.888991e-03	7.212837e-03	7.949635e-03
C>G	C.C	1.962245e-04	9.715947e-03	1.158418e-12	7.156965e-03
C>G	C.G	3.300401e-20	1.855024e-03	4.346525e-03	6.200559e-03
C>G	C.T	9.865314e-03	1.922285e-03	6.273441e-03	6.226190e-03
C>G	G.A	1.351834e-19	2.119713e-03	1.072168e-02	8.229779e-03
C>G	G.C	2.379848e-03	4.610717e-03	8.965747e-04	6.505033e-03
C>G	G.G	6.979718e-04	1.181697e-03	4.111756e-03	2.523959e-03
C>G	G.T	2.220903e-03	5.934769e-03	8.611327e-03	6.739344e-03
C>G	T.A	3.709345e-03	8.786940e-03	7.620791e-03	8.983741e-03
C>G	T.C	3.827093e-03	8.865683e-03	6.057793e-03	6.240498e-03
C>G	T.G	1.899263e-04	4.938065e-03	3.040335e-03	1.626378e-03
C>G	T.T	3.860261e-03	2.446381e-02	2.353559e-02	1.511199e-02
C>T	A.A	3.499419e-02	3.714546e-02	4.085734e-02	3.151538e-02
C>T	A.C	1.719840e-02	1.389005e-02	5.154001e-03	1.603745e-02
C>T	A.G	7.482535e-02	1.348050e-02	3.052063e-02	1.592390e-02
C>T	A.T	1.607143e-02	1.438585e-02	1.967215e-02	1.741898e-02
C>T	C.A	1.606874e-02	1.435234e-02	1.105389e-02	1.125796e-02
C>T	C.C	1.700219e-02	9.214402e-03	1.282668e-02	1.377429e-02
C>T	C.G	4.356691e-02	1.624586e-02	1.169686e-02	1.963077e-02
C>T	C.T	2.301602e-02	3.266347e-02	1.574218e-02	2.039183e-02
C>T	G.A	1.970589e-02	7.742080e-03	1.178227e-02	1.297792e-02
C>T	G.C	1.466426e-02	1.914382e-02	6.909098e-03	1.355502e-02
C>T	G.G	3.701827e-02	2.542796e-02	1.262381e-02	3.190790e-02
C>T	G.T	1.382222e-02	2.392818e-02	6.174897e-03	1.508942e-02
C>T	T.A	1.143013e-02	1.914536e-02	1.002998e-02	7.458921e-03
C>T	T.C	1.879514e-02	2.009898e-02	1.421423e-02	1.556176e-02
C>T	T.G	3.061491e-02	4.743450e-03	1.167740e-02	7.144683e-03
C>T	T.T	3.133938e-02	2.219653e-02	3.807693e-02	3.192865e-02
T>A	A.A	1.841481e-02	8.914346e-03	1.741295e-02	1.361688e-02
T>A	A.C	3.425691e-03	8.698638e-03	3.992626e-03	5.443164e-03
T>A	A.G	9.072656e-03	1.149533e-02	1.354019e-03	8.223373e-03
T>A	A.T	9.659453e-03	1.830189e-02	1.174139e-02	1.710128e-02
T>A	C.A	2.727069e-03	7.915424e-03	5.772823e-03	4.530720e-03
T>A	C.C	1.215316e-02	3.470147e-03	7.886743e-03	1.369393e-02
T>A	C.G	3.791221e-03	6.605963e-03	3.294232e-03	8.818173e-03
T>A	C.T	6.289729e-03	1.435186e-02	3.597548e-03	1.211551e-02
T>A	G.A	6.615841e-04	4.146662e-03	4.933783e-03	4.863214e-03
T>A	G.C	1.515807e-03	4.210462e-03	3.382936e-03	9.183128e-04
T>A	G.G	1.070023e-02	1.089710e-02	5.492536e-03	8.802992e-03
T>A	G.T	8.128051e-03	4.233917e-03	9.103699e-03	1.259684e-02
T>A	T.A	1.476324e-02	6.549494e-03	1.579044e-02	7.620545e-03
T>A	T.C	6.738527e-03	8.767946e-04	7.353978e-03	5.436410e-03
T>A	T.G	2.186518e-03	5.445354e-03	2.568144e-03	7.932364e-03
T>A	T.T	1.942541e-02	1.590353e-02	2.306069e-02	3.009347e-02
T>C	A.A	3.011297e-02	3.375076e-02	4.906885e-02	3.383597e-02
T>C	A.C	9.041893e-03	8.933211e-03	8.243474e-03	6.303632e-03
T>C	A.G	2.247578e-02	9.001629e-03	1.950973e-02	8.972544e-03
T>C	A.T	1.210116e-02	1.578255e-02	1.360358e-02	9.528566e-03
T>C	C.A	6.835997e-03	6.652934e-03	1.036887e-02	7.994706e-03
T>C	C.C	9.462334e-03	6.392714e-03	8.437885e-03	1.653238e-02
T>C	C.G	7.156018e-03	1.612832e-02	1.225799e-02	9.579249e-03
T>C	C.T	1.040136e-02	2.530647e-02	1.208573e-02	1.371705e-02
T>C	G.A	8.743261e-03	1.074754e-02	5.087249e-03	1.090594e-02
T>C	G.C	6.111817e-03	6.456267e-03	3.668932e-20	6.346677e-03
T>C	G.G	1.768834e-02	1.377477e-02	1.512171e-02	1.240640e-02
T>C	G.T	3.605052e-03	1.397132e-02	1.282818e-02	1.036663e-02
T>C	T.A	5.577357e-03	1.122841e-02	7.516272e-03	9.852123e-03
T>C	T.C	2.142753e-02	1.003311e-02	1.311934e-02	1.883301e-02
T>C	T.G	3.231084e-03	7.639140e-03	1.374439e-02	6.010940e-03
T>C	T.T	1.771125e-02	5.247659e-02	2.430165e-02	3.016747e-02
T>G	A.A	1.331124e-02	1.426333e-02	7.805243e-05	7.473665e-03
T>G	A.C	3.887921e-03	1.684454e-03	1.435130e-04	6.445063e-04
T>G	A.G	2.394241e-03	5.040173e-03	6.853239e-03	6.994037e-03
T>G	A.T	6.066623e-03	7.374853e-03	2.079215e-10	5.136694e-03
T>G	C.A	5.000218e-10	8.218020e-03	3.668932e-20	2.314023e-20
T>G	C.C	3.300401e-20	1.904378e-03	4.043369e-03	4.672135e-03
T>G	C.G	4.310666e-03	2.256883e-03	8.181657e-03	1.928646e-03
T>G	C.T	2.128603e-03	9.425709e-04	8.787753e-03	6.815812e-04
T>G	G.A	2.012235e-03	4.628783e-04	4.459546e-03	1.814827e-03
T>G	G.C	3.997247e-03	1.335924e-03	1.270853e-03	3.568581e-03
T>G	G.G	7.790802e-03	1.175435e-02	8.700500e-03	8.985015e-03
T>G	G.T	6.538479e-03	1.329525e-02	4.903674e-03	1.074729e-02
T>G	T.A	2.781217e-03	4.774228e-03	2.965653e-03	7.301491e-03
T>G	T.C	5.182071e-03	5.200467e-03	5.617300e-03	2.629881e-03
T>G	T.G	5.245736e-03	1.345072e-02	1.698469e-02	9.832179e-03
T>G	T.T	2.041928e-02	1.752970e-02	3.978473e-02	1.976735e-02