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annotate test-data/X_100000_Hum1.bam_Short_Insertions.txt @ 1:078c6ab38858 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
author artbio
date Tue, 13 Feb 2024 10:53:40 +0000
parents decc6b5631dc
children
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decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
1 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
2 0 I 58 NT 58 "GTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTG" ChrID X BP 665 666 BP_range 665 673 Supports 3 3 + 2 2 - 1 1 S1 6 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 25 25 2 2 1 1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
3 GACCGAGTATGGCACGACGGCTTGCTATATAAACTATCCAGACTCATCCCCAGATACCTATTCGACCTACTTGAAAACTATTTATCTAATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAAC GTCTAGGATAGGTAATATTAGAGCAGGAGTGCCCCAGGGCAGCATACTGGGACCGGTCCTCTACTCAATATACTCATCCGACATGCCCTATCCCATCGTAAAAGACTATATGCGTAACATATCCT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
4 ATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGGAGT - 695 0 X_100000_Hum1.bam @HWI-3101202/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
5 AATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGGAG + 443 0 X_100000_Hum1.bam @HWI-25769383/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
6 AATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGGAG + 443 0 X_100000_Hum1.bam @HWI-1199625/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
7 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
8 1 I 1 NT 1 "A" ChrID X BP 3910 3911 BP_range 3910 3916 Supports 9 9 + 9 9 - 0 0 S1 10 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 1 1 9 9 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
9 CCAGACTATTTTTCCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATAC AAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAAAATTTAATATTACATCCATTCCCATGGCCCAATCGTTGCGGCGGTCCTCAGCAACAATTCCTGACCCGGAACATC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
10 ATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAA + 3746 0 X_100000_Hum1.bam @HWI-34902444/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
11 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAA + 3746 0 X_100000_Hum1.bam @HWI-13892636/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
12 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAAT + 3770 0 X_100000_Hum1.bam @HWI-1696698/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
13 ACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAA + 3813 0 X_100000_Hum1.bam @HWI-45525114/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
14 TACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAA + 3812 0 X_100000_Hum1.bam @HWI-9492711/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
15 TACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAA + 3812 0 X_100000_Hum1.bam @HWI-6629964/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
16 AACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAA + 3808 0 X_100000_Hum1.bam @HWI-18344603/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
17 AACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAA + 3808 0 X_100000_Hum1.bam @HWI-1724059/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
18 CCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGA + 3798 0 X_100000_Hum1.bam @HWI-24082355/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
19 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
20 2 I 54 NT 54 "CGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATA" ChrID X BP 5646 5647 BP_range 5646 5697 Supports 4 4 + 0 0 - 4 4 S1 5 SUM_MS 78 1 NumSupSamples 1 1 X_100000_Hum1.bam 3 3 0 0 4 4
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
21 TTTACATTATTACTAACTATGTCCAACCCCCAAACTCACCACATGTAATGTTACATTCAAAAATGCAAATTATTGTACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATG CGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAAAAAAAAAAAACCAGCAAAGTTAAAAAAATAATAAATAAAATAAAATTAAATAATTTAAACAAATAATAACAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
22 AAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATACGGAACAGAATTTATTCTGTCTCCGTACCTCCACC - 5792 21 X_100000_Hum1.bam @HWI-7343352/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
23 AAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATACGGAACAGAATTTATTCTGTCTCCGTACCTCCACC - 5814 15 X_100000_Hum1.bam @HWI-16559430/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
24 AAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATACGGAACAGAATTTATTCTGTCTCCGTACCTCCACC - 5797 21 X_100000_Hum1.bam @HWI-35928118/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
25 AAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATACGGAACAGAATTTATTCTGTCTCCGTACCTCCACC - 5797 21 X_100000_Hum1.bam @HWI-34726262/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
26 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
27 3 I 4 NT 4 "AAAA" ChrID X BP 5931 5932 BP_range 5931 5938 Supports 4 4 + 0 0 - 4 4 S1 5 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 18 18 0 0 4 4
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
28 AAATAATCCGCGCTTTCCCTTGCTAAATATTCTGACGCGCAAATATAATTTAAATCGCCTTTTCTTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAAT AAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAGCAAAGTTA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
29 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGC - 6210 0 X_100000_Hum1.bam @HWI-38064939/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
30 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAG - 6210 0 X_100000_Hum1.bam @HWI-31361550/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
31 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAG - 6210 0 X_100000_Hum1.bam @HWI-30153092/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
32 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAG - 6210 0 X_100000_Hum1.bam @HWI-3008455/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
33 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
34 4 I 5 NT 5 "AAAAA" ChrID X BP 5931 5932 BP_range 5931 5938 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 18 18 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
35 AAATAATCCGCGCTTTCCCTTGCTAAATATTCTGACGCGCAAATATAATTTAAATCGCCTTTTCTTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAAT AAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAGCAAAGTTA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
36 TTTCATTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAAACAATTAA + 5866 0 X_100000_Hum1.bam @HWI-28997954/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
37 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
38 5 I 2 NT 2 "AC" ChrID X BP 16822 16823 BP_range 16822 16828 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 0 0 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
39 CCAAGCCAACACAGCCCGCCAAAAACCCCTCACCCCTCTCCCAGAAGCAAATAACAAGCATAGCAGCCAATACACTCACCCACACAAACAAACACACAGCATCACAAAACTTTATTCCCGCCAAA ACACATATAAACATACCCACACAATATAACGACACCAATGCAACCAAAGCATTAAAAACCGCAAAACCAGCTTCTCCCTCCCACACATACTCACGCCAGACAAAACCAATAAAGCCCGCCATAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
40 CCGCCAAAAAACACATATAAACATACCCACACAATATA + 16814 0 X_100000_Hum1.bam @HWI-31487804/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
41 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
42 6 I 8 NT 8 "CTGGATGA" ChrID X BP 22202 22203 BP_range 22202 22206 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 2 2 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
43 AAAGGAAATAAATACAAAAAGGCTAAAGGCTAAGTTACAGGTTACATAAAAAGGGAAATGTGCTTATAGATATAATGGTAAAATTAACTTAACTAAACACCTACTGGAAAACAAAACCATGATGG CTGCGTACTTAAAACGTTTCTCCTGGCGCGATTGAAAATCCATCTTTCCTATCCAACCGAGGGATCTGCGACTGCGGCCTTCTGCCGTTCGGCTCCTGATGGATCCATCTGCTGCTGGAATGGGT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
44 AAAGGCTAAGTTACAGGTTACATAAAAAGGAAAATGTGCTTATAGATATAATGGTAAAATTAACTTAACTAAACACCTACTGGAAAACAAAACCATGATGGCTGGATGACTGCGAACTTAAATCG + 22051 0 X_100000_Hum1.bam @HWI-23432543/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
45 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
46 7 I 1 NT 1 "A" ChrID X BP 31349 31350 BP_range 31349 31357 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 6 5 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
47 CACACCCTCACACTAGACGAAAACACAAGCAGATTGTTGGAAGAAAAACGGATACTAAGTAGAATTTTTAAAGCTACTAGAACGGACGAGGACAAAGCTAAACTAAAAGCAGCTGAAAATCGACT AAAAAAAGCGGTAAAGATCTTGAGAGAAAAGAGAATTAATAAACAAATTGAAGGAATAGACACGAAAAACCCGGACAGAATGAGGAAAATGTGGAGACTGCTAGATGAAGGAAAAAAGACAAACC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
48 GACAAACCTAAACTAAAAGCAGCTGAAAATCGACTAAAAAAAAGCGGTAAAAATCTTGAGAGAAAAGAGAATTAATAAACAAATTGAAGGAGT + 31219 0 X_100000_Hum1.bam @HWI-26492474/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
49 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
50 8 I 80 NT 80 "GGTGTGTTCTTTGGCTCTACATTTATCGTTGAAATCCGTCTCCAACTGCCGCGAGTCACCCACGACTTCCACTCCCTGCA" ChrID X BP 35041 35042 BP_range 35041 35043 Supports 1 1 + 0 0 - 1 1 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 1 1 0 0 1 1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
51 GACTCCTCGCTTGGCCCCTGGCGATTCGCCCTGAAAGAAAGAAAGAAGCATGGATTAGTCAAATACCAAAGCACAACAAGCATGCACGAAATCTGCGCAACAAGGACTATTCCAAGGCAAGCGAT GACGGACGGAATGCACTACTATGTGTAAATTTTCCGGATCCAAGTGAACGCCAGGCGGAAGAGGATTCCCTGGATGTGAAGGATCACAAACTGCTGCTTCTTCAAGAGGTAACCGGCCTCATTTC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
52 AAATCTTCGCAACAAGGACTATTCCAAGGCAAGCGATGGTGTGTTCTTTGGCTCTACATTTATCGTTGAAATCCGTCTCCAACTGCCGCGAGTCACCCACGACTTCCACTCCCTGCAGACGGACG - 35207 0 X_100000_Hum1.bam @HWI-14355603/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
53 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
54 9 I 1 NT 1 "A" ChrID X BP 35738 35739 BP_range 35738 35744 Supports 2 2 + 1 1 - 1 1 S1 4 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 4 4 1 1 1 1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
55 ATGAATCGTCCTGGAAGAAAGAAGCATGGATTATTTCTTCATACACAGCTTGTCTACTAAAATGCATTTCCCGGCAAACTGGCACTGGGGCGTTGAAAATACGACACTACTCACCAAACAGCAGC AAAAACAACAGCATCGGCAGCAGGCGACCAGCAGCTGCTCTGGCTCACCCAATGCGACAGCAATATCTGCGGCATGGCCAGCAACATGCAGCAAGCAAAAGACCGGCATGGTGGTGAACAACATA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
56 ACTACTCACCAAACAGCAGCAAAAAAAAACAGCATCGGCAGCAGGCGACCAGCAGCTGCTTTGGCTCACCCAATGCGACAGCAATATCTGCGGCGTGGCCAGCAACATGCAGCAAGCAAAAGACC + 35659 0 X_100000_Hum1.bam @HWI-9284460/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
57 AGCTTGTCTACTAAAATGCATTTCCCGGCAAACTGGCACTGTGGCGTTGAAAATACGACACTACTCACCAAACAGCAGCAAAAAAAAACAGCATCGGCAGCAGGCGACCA - 35843 0 X_100000_Hum1.bam @HWI-9284460/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
58 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
59 10 I 1 NT 1 "A" ChrID X BP 43020 43021 BP_range 43020 43028 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 2 2 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
60 CACACCCTCACACTAGACGAAAACACAAGCAGATTGTTGGAAGAAAAACGGATACTAAGTAGAATTTTTAAAGCTACTAGAACGGACGAGGACAAAGCTAAACTAAAAGCAGCTGAAAATCGACT AAAAAAAGCGGTAAAGATCTTGAGAGAAAAGAGAATTAATAAACAAATTGAAGGAATAGACACGAAAAACCCGGACAGAATGAGGAAAATGTGGAGACTGCTAGATGAAGGAAAAAAGACAAACC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
61 GAGGACAAACCTAAACTAAAAGCAGCTGAAAATCGACTAAAAAAAAGCGGTAAAAATCTTGAGAGAAAAGAGAATTAATAAACAAATTGAAGGAGT + 42890 0 X_100000_Hum1.bam @HWI-45718882/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
62 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
63 11 I 19 NT 19 "AGACATTTTCGGTCTGGGC" ChrID X BP 44171 44172 BP_range 44171 44184 Supports 1 1 + 0 0 - 1 1 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 12 12 0 0 1 1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
64 CCCACACATATACCACCCCTCCCCAACAGAAAGAATTATGCTCTCAACATACGCAGACGACACTATAGTACTCAGCTCAGACATACTAGCAACTGCTGCCACAAGAAACAACGAAAACTACCTCA AGACATTTTCGGACTGGGCAGACAAATGGGGTATCTCAGTAAATGCTGCTAAAACAGGACATGTCATTTATACATTAAAAAACGACATACCTACAAATCTAAAGACCATGAAGATTAAGGGTCAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
65 CTGCTGCCACAAGAAACAACGAAAACTACCTCAAGACATTTTCGGTCTGGGCAGACAATTT - 44328 0 X_100000_Hum1.bam @HWI-6175226/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
66 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
67 12 I 9 NT 9 "AGCAAAGTA" ChrID X BP 55013 55014 BP_range 55013 55022 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 6 6 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
68 TCACCCCATGCAATGTTAAACCTATAAATTCAAATAATTGTACCTATATATTGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACC AGCAAAGTTAAAATCCATGCATCCTTCTTCCAAGACTGCAAAACAGAAAGAAGGAAACACAAGCTATACTGGGAAAAATATATTAAATCACAATACTTATCTAATTGCCAATTTGAAGAATCCTA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
69 ATAATTGTACCTATATATTGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTAAGCAAAGTTA + 54794 0 X_100000_Hum1.bam @HWI-28381653/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
70 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
71 13 I 60 NT 60 "CCGTACCTCCACCAGCAAAGTTAAAAAAATACCTCCACCAGCAAAGTTAAAAAATAAAAA" ChrID X BP 57639 57640 BP_range 57639 57666 Supports 2 2 + 2 2 - 0 0 S1 3 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 11 11 2 2 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
72 CCAACCCCCAAACTCACCACATGTAATGTTACATTCAAAAATGCAAATTATTGTACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCT CCGTACCTCCACCAGCAAAGTTAAAAGTACCTCCACCAGCAAAGTTAAAAAAGTTAAAATAATAAAGTTAATAAAAAATAAACAAATTAAATAAATAAATAAAATAAATTAAACAATTAACTAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
73 ATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAATACCTCCACCAGCAAAGTTAAAAAATAAAAACCGTACCTCCACCAGCA + 57591 0 X_100000_Hum1.bam @HWI-44912383/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
74 ATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAATACCTCCACCAGCAAAGTTAAAAAATAAAAACCGTACCTCCACCAGCA + 57591 0 X_100000_Hum1.bam @HWI-38117308/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
75 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
76 14 I 24 NT 24 "GTACCTCCACCAGCAAAGTTAAAA" ChrID X BP 57641 57642 BP_range 57641 57690 Supports 3 3 + 0 0 - 3 3 S1 4 SUM_MS 108 1 NumSupSamples 1 1 X_100000_Hum1.bam 10 11 0 0 3 3
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
77 AACCCCCAAACTCACCACATGTAATGTTACATTCAAAAATGCAAATTATTGTACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCC GTACCTCCACCAGCAAAGTTAAAAGTACCTCCACCAGCAAAGTTAAAAAAGTTAAAATAATAAAGTTAATAAAAAATAAACAAATTAAATAAATAAATAAAATAAATTAAACAATTAACTAAATA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
78 ACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGTACCTCCACCAGCAAAGTTAAAAGCAC - 57699 36 X_100000_Hum1.bam @HWI-27783478/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
79 ACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGTACCTCCACCAGCAAAGTTAAAAGCAC - 57699 36 X_100000_Hum1.bam @HWI-13781192/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
80 ACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGTACCTCCACCAGCAAAGTTAAAAGCAC - 57699 36 X_100000_Hum1.bam @HWI-2099308/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
81 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
82 15 I 1 NT 1 "C" ChrID X BP 57665 57666 BP_range 57665 57666 Supports 2 2 + 0 0 - 2 2 S1 3 SUM_MS 98 1 NumSupSamples 1 1 X_100000_Hum1.bam 2 2 0 0 2 2
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
83 TGTTACATTCAAAAATGCAAATTATTGTACCTATATATTACAAACTCTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAA GTACCTCCACCAGCAAAGTTAAAAAAGTTAAAATAATAAAGTTAATAAAAAATAAACAAATTAAATAAATAAATAAAATAAATTAAACAATTAACTAAATAATTAAATAACTAAAATTAATAATA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
84 TCTGTCTCCGTACCTCCACCAGCAAAGTTAAAACGTACCTCCACCAGCAAAGTTAAAAAAGTTAAAATAATAAAGTTAATAAAAAATAAACAAATTAAATAAATAAATAAAATAAATTAAACAAT - 57853 49 X_100000_Hum1.bam @HWI-30327738/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
85 TCTGTCTCCGTACCTCCACCAGCAAAGTTAAAACGTACCTCCACCAGCAAAGTTAAAAAAGTTAAAATAATAAAGTTAATAAAAAATAAACAAATTAAATAAATAAATAAAATAAATTAAACAAT - 57853 49 X_100000_Hum1.bam @HWI-21538020/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
86 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
87 16 I 1 NT 1 "A" ChrID X BP 61384 61385 BP_range 61384 61386 Supports 5 5 + 5 5 - 0 0 S1 6 SUM_MS 300 1 NumSupSamples 1 1 X_100000_Hum1.bam 76 76 5 5 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
88 AATATATCCAATAGAAAAGCGCACGTCGGTCTGCTTTTAAAATCCTTCACCGTCATCACCTTCCTCGACGGAGCCTAATTTATTGGAAAAATAAATCAATTATATGTTGGCACAAAAATGTAAAC ACACACTCACCTAAACGCACCCGGACGAACAAGCCTATGACAACGCACTCCAGCTGATCTGTAAGAAACAAAAAATATGAATAGATAGATCGATATGAAAAGGATAAGTGCGGCAGAAACATGAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
89 ATGTTGGCACAAAAATGTAAACAACACACTCACCTAAACGCACCCGGACGAACAAGCCTATGACAACGCACTCCAGCTGATCTGTAAGAAACAAAAAATATGAATAGATAGATCG + 61268 60 X_100000_Hum1.bam @HWI-10124805/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
90 AATCAATTATATGTTGGCACAAAAATGTAAACAACACACTCACCTAAACGCACCCGGACGAACAAGCCTATGACAACGCACTCCAGCTGATCTGTAAGAAACAAAAAATATGAATAGATAGATCG + 61268 60 X_100000_Hum1.bam @HWI-25047933/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
91 AATCAATTATATGTTGGCACAAAAATGTAAACAACACACTCACCTAAACGCACCCGGACGAACAAGCCTATGACAACGCACTCCAGCTGATCTGTAAGAAACAAAAAATATGAATAGATAGATCG + 61268 60 X_100000_Hum1.bam @HWI-15345398/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
92 GTCGGTCTGCTTTTAAAATCCTTCACCGTCATCACCTTCCTCGACGGAGCCTAATTTATTGGAAAAATAAATCAATTATATGTTGGCACAAAAATGTAAACAACACACTCACCTAAACGCACCCG + 61161 60 X_100000_Hum1.bam @HWI-31974573/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
93 GTCGGTCTGCTTTTAAAATCCTTCACCGTCATCACCTTCCTCGACGGAGCCTAATTTATTGGAAAAATAAATCAATTATATGTTGGCACAAAAATGTAAACAACACACTCACCTAAACGCACCCG + 61161 60 X_100000_Hum1.bam @HWI-12539869/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
94 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
95 17 I 59 NT 59 "GCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCACCAGCAAAGTTAAAA" ChrID X BP 62885 62886 BP_range 62885 62886 Supports 4 4 + 4 4 - 0 0 S1 5 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 20 20 4 4 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
96 AACGCAATTAATAAATCAAATAAATACAAGTATAATACTTACCTCCAAGCAAACGTACCTGAAAAACAAAACCAAAAAAAAAAATTAATGCAATAAATAAATCAAATAAATACAAACATAATACT TACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACAAATAACAAATGTAATACTTACCAAATTTTAATTTTGTATTCATTTCCATGACCCCAACGCT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
97 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA + 62849 0 X_100000_Hum1.bam @HWI-42119375/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
98 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA + 62849 0 X_100000_Hum1.bam @HWI-18910856/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
99 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA + 62849 0 X_100000_Hum1.bam @HWI-18358275/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
100 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA + 62849 0 X_100000_Hum1.bam @HWI-14417818/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
101 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
102 18 I 1 NT 1 "A" ChrID X BP 64595 64596 BP_range 64595 64601 Supports 11 11 + 4 4 - 7 7 S1 40 SUM_MS 120 1 NumSupSamples 1 1 X_100000_Hum1.bam 32 32 4 4 7 7
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
103 AAGCCAATACTGGGAATTATTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACT AAAAATTAACGCAATCATAAAAACAAAAACAATCATAATACTCATCTCTACAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAATGCAATTAATAAATCAAATAAATACAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
104 ACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAA + 64329 0 X_100000_Hum1.bam @HWI-13691642/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
105 CCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAA + 64329 0 X_100000_Hum1.bam @HWI-42317732/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
106 CGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAA + 64329 0 X_100000_Hum1.bam @HWI-17996011/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
107 CGACTCCAAACCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAA + 64329 0 X_100000_Hum1.bam @HWI-16344600/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
108 ATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAAACAAAAACAA - 64652 24 X_100000_Hum1.bam @HWI-44263008/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
109 ATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAAACAAAAACAA - 64653 24 X_100000_Hum1.bam @HWI-39374863/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
110 ATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAAACAAAAACAA - 64653 24 X_100000_Hum1.bam @HWI-2017663/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
111 ATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCATAAAAACAAAAACAA - 64653 24 X_100000_Hum1.bam @HWI-1449632/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
112 ATTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCA - 64730 0 X_100000_Hum1.bam @HWI-13078047/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
113 ATTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCA - 64730 0 X_100000_Hum1.bam @HWI-4533477/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
114 ATTTAATTAAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATCCACGGCACACCGGTCGCGATTAATTATAATTAATTACAAAAAGTACCTGAAAAACTAAAAAATTAACGCAATCA - 64730 24 X_100000_Hum1.bam @HWI-3636742/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
115 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
116 19 I 35 NT 35 "AGATACGGAACAGAATTTATTCTGTCTCCGTACCT" ChrID X BP 65773 65774 BP_range 65773 65774 Supports 2 2 + 2 2 - 0 0 S1 3 SUM_MS 18 1 NumSupSamples 1 1 X_100000_Hum1.bam 0 0 2 2 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
117 TGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTCATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAA CCACCAGCAAAGTTAAAAAAATAATAAATAAAATAAAATTAAATAATTTAAACAAATAATAACAAATAATAAATAAATAATAAATTAAATAAATATTTAATAAAATAATCCGCGCTTTCCCTTGC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
118 AAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATACGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTATAAAATTAA + 65637 9 X_100000_Hum1.bam @HWI-4874218/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
119 AAAATAAATTGTGGATGCGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAGATACGGAACAGAATTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTATAAAATTAA + 65637 9 X_100000_Hum1.bam @HWI-8891868/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
120 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
121 20 I 33 NT 33 "TAAAAAAGTTAAACACCAGCAAAGTTAAAAAGT" ChrID X BP 65794 65795 BP_range 65794 65798 Supports 3 3 + 0 0 - 3 3 S1 4 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 4 3 0 0 3 3
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
122 TTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTCATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAACCACCAGCAAAGTTAAAAAAA TAATAAATAAAATAAAATTAAATAATTTAAACAAATAATAACAAATAATAAATAAATAATAAATTAAATAAATATTTAATAAAATAATCCGCGCTTTCCCTTGCTAAATATTCTGACGCGCAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
123 CAGCAAAGTTATAAAATTAAAAAAGTTAAACACCAGCAAAGTTAAAAAGTTAATAAATAAAATAAAATTAAATAATTTAAACAAATAATAACAAATAATAAATAAATAATAAATTAAATAAATAT - 66264 0 X_100000_Hum1.bam @HWI-16133224/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
124 CAGCAAAGTTATAAAATTAAAAAAGTTAAACACCAGCAAAGTTAAAAAGTTAATAAATAAAATAAAATTAAATAATTTAAACAAATAATAACAAATAATAAATAAATAATAAATTAAATAAATAT - 66264 0 X_100000_Hum1.bam @HWI-13424625/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
125 CAGCAAAGTTATAAAATTAAAAAAGTTAAACACCAGCAAAGTTAAAAAGTTAATAAATAAAATAAAATTAAATAATTTAAACAAATAATAACAAATAATAAATAAATAATAAATTAAATAAATAT - 66264 0 X_100000_Hum1.bam @HWI-597984/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
126 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
127 21 I 4 NT 4 "AAAA" ChrID X BP 66000 66001 BP_range 66000 66007 Supports 3 3 + 0 0 - 3 3 S1 4 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 17 17 0 0 3 3
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
128 AAATAATCCGCGCTTTCCCTTGCTAAATATTCTGACGCGCAAATATAATTTAAATCGCCTTTTCTTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAAT AAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAGCAAAGTTA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
129 CAATAAAAAAAAAACAATTAATCGACAAA - 66279 0 X_100000_Hum1.bam @HWI-24777307/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
130 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAG - 66279 0 X_100000_Hum1.bam @HWI-45677736/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
131 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAG - 66279 0 X_100000_Hum1.bam @HWI-1340718/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
132 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
133 22 I 58 NT 58 "GTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTG" ChrID X BP 74314 74315 BP_range 74314 74322 Supports 4 4 + 3 3 - 1 1 S1 8 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 31 31 3 3 1 1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
134 GACCGAGTATGGCACGACGGCTTGCTATATAAACTATCCAGACTCATCCCCAGATACCTATTCGACCTACTTGAAAACTATTTATCTAATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAAC GTCTAGGATAGGTAATATTAGAGCAGGAGTGCCCCAGGGCAGCATACTGGGACCGGTCCTCTACTCAATATACTCATCCGACATGCCCTATCCCATCGTAAAAGACTATATGCGTAACATATCCT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
135 TAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGGAGTGCCCCAGGGCAGCAT - 74439 0 X_100000_Hum1.bam @HWI-4285160/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
136 AATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGGAG + 74092 0 X_100000_Hum1.bam @HWI-16706244/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
137 AATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGGAG + 74092 0 X_100000_Hum1.bam @HWI-6947013/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
138 CTAATAGAACCTTCTCAGTAAGGATCGACGGTGAAACAACGTCTAGGCAAAGACACTAGAATAATTATAATAATATAATAATTATTCTAGGGTCTTTGGTCTAGGATAGGTAATATTAGAGCAGG + 74274 0 X_100000_Hum1.bam @HWI-7575195/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
139 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
140 23 I 1 NT 1 "A" ChrID X BP 77559 77560 BP_range 77559 77565 Supports 10 10 + 3 3 - 7 7 S1 32 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 6 6 3 3 7 7
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
141 CCAGACTATTTTTCCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATAC AAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAAAATTTAATATTACATCCATTCCCATGGCCCAATCGTTGCGGCGGTCCTCAGCAACAATTCCTGACCCGGAACATC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
142 AAATACAAAAAATTAGAGAAATCACAAAAATAAATAACA + 77401 0 X_100000_Hum1.bam @HWI-37835687/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
143 AGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAATTT - 77613 0 X_100000_Hum1.bam @HWI-37680776/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
144 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAAT + 77419 0 X_100000_Hum1.bam @HWI-31263500/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
145 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAG - 77595 0 X_100000_Hum1.bam @HWI-28076462/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
146 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAAT - 77584 0 X_100000_Hum1.bam @HWI-20579317/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
147 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTAT - 77600 0 X_100000_Hum1.bam @HWI-9137354/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
148 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAA + 77395 0 X_100000_Hum1.bam @HWI-3569690/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
149 ACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGG - 77730 0 X_100000_Hum1.bam @HWI-2922639/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
150 AACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAA - 77697 0 X_100000_Hum1.bam @HWI-18857718/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
151 CCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGA - 77666 0 X_100000_Hum1.bam @HWI-11566427/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
152 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
153 24 I 15 NT 15 "AAAATTTTTCAAATT" ChrID X BP 79592 79593 BP_range 79592 79593 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 18 18 1 1 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
154 AAGTTAAAAAAAGTTAAAAAAAACAAAGTTAAAATAAACAAAATAAAATAAATTAAACAATTAAATTAAATAAAATAAATTAAACAAATAATTAAACTAAACTTATTTAACAACATAATCCGCGC TTCCACCTGCAAAATTTTTTCTGACGCGCAAATATAATTTAAATCGCCTTTTCATTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAATACCGCGACAATAAAAAACAATT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
155 TAAATTAAATAAAACAAATTAAACAAATAATTAAACTAAATTTATTTAACAACATAATCCGCGCAAAATTTTTCAAATTTTCCACCTGC + 79501 0 X_100000_Hum1.bam @HWI-32017280/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
156 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
157 25 I 1 NT 1 "A" ChrID X BP 79987 79988 BP_range 79987 79991 Supports 4 4 + 4 4 - 0 0 S1 5 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 20 20 4 4 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
158 AATAAATTAAACTAATTAAATAAACTAGTAAATTGAACCTATTTAACAAAATAATTCGCGCTTCCACCTGCATAATTTTCTCACGCGCAAATTTAATTTTAAATCGCCTTTTCGTACGAGAAATT AAAGTTTAAAATTGTTTTCCGGACGCAAAGTTAAAACCGCGACAACAATAAACATTTAGTGGACAAACGAAAGGTGAACAATTAATTGTGTAATAATTGTGCGAATTGACAAGCTGCCGCCATAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
159 TGCATAATTTTCTCTCGCTCAAATTTAATTTTAAATCGCCTTTTCGTACGAGAAATTAAAAGTTTAAAATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAACAATAAACATTTAGTGGACAAA + 79930 0 X_100000_Hum1.bam @HWI-31405451/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
160 ACCTGCATAATTTTCTCTCGCTCAAATTTAATTTTAAATCGCCTTTTCGTACGAGAAATTAAAAGTTTAAAATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAACAATAAACATTTAGTGGAC + 79900 0 X_100000_Hum1.bam @HWI-38946675/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
161 ACCTGCATAATTTTCTCTCGCTCAAATTTAATTTTAAATCGCCTTTTCGTACGAGAAATTAAAAGTTTAAAATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAACAATAAACATTTAGTGGAC + 79900 0 X_100000_Hum1.bam @HWI-38596247/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
162 ACCTGCATAATTTTCTCTCGCTCAAATTTAATTTTAAATCGCCTTTTCGTACGAGAAATTAAAAGTTTAAAATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAACAATAAACATTTAGTGGAC + 79900 0 X_100000_Hum1.bam @HWI-18530029/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
163 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
164 26 I 12 NT 12 "GACATGGAAGAT" ChrID X BP 83404 83405 BP_range 83404 83407 Supports 6 6 + 4 4 - 2 2 S1 15 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 13 13 4 4 2 2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
165 ATTAATTAGACGGAAGGCATAAAAACACAAACACTACTCTCACCTCAACGTACCTGGATAATTAAGCACATGACAACGCCCACCAGCTGATCCTGACGAAGCGATACGAAGAAGAACAACACCAA GAATCGGAAGATCGATATAAATAAGATTAGTGCGGCAAAAGCAGGATGAGTATAAGGCGACTCGCTGCAGCAATATATGCACAACGTCACTTACCTGAATTTTCTTGCCGCACTGTCTTCTGAAG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
166 CACCAAGACATGGAAGATGAATCGGAAGATCGATATAAATAAGATTAGTGGGGCAAAAGCATGATGAGCATAAGGCGACTCGCTGCAGCAATATATGCACAACGTCACTTACCTGAATTTTCTTG + 83310 0 X_100000_Hum1.bam @HWI-35688750/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
167 CACCAAGACATGGAAGATGAATCGGAAGATCGATATAAATAAGATTAGTGGGGCAAAAGCATGATGAGCATAAGGCGACTCGCTGCAGCAATATATGCACAACGTCACTTACCTGAATTTTCTTG + 83310 0 X_100000_Hum1.bam @HWI-12470768/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
168 GAAGAAGTACAACACCAAGACATGGAAGATGAATCGGAAGATCGATATAAATAAGATTAGTGGGGCAAAAGCATGATGAGCATAAGGCGACTCGCTGCAGCAATATATGCACAACGTCACTTACC - 83529 0 X_100000_Hum1.bam @HWI-23660629/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
169 GAAGAAGTACAACACCAAGACATGGAAGATGAATCGGAAGATCGATATAAATAAGATTAGTGGGGCAAAAGCATGATGAGCATAAGGCGACTCGCTGCAGCAATATATGCACAACGTCACTTACC + 83404 0 X_100000_Hum1.bam @HWI-30671627/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
170 TGACGAAGCGATACGAAGAAGTACAACACCAAGACATGGAAGATGAATCGGAAGATCGATATAAATAAGATTAGTGGGGCAAAAGCATGATGAGCATAAGGCGACTCGCT + 82951 0 X_100000_Hum1.bam @HWI-2389423/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
171 ATCCTGACGAAGCGATACGAAGAAGTACAACACCAAGACATGGAAGATGAATCGGAAGATCGATATAAATAAGATTAGTGGGGCAAAAGCATGATGAGCATAAGGCGACTCGCTGCAGCAATATA - 83529 0 X_100000_Hum1.bam @HWI-44011423/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
172 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
173 27 I 47 NT 47 "AAAGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGC" ChrID X BP 85921 85922 BP_range 85921 85925 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 51 1 NumSupSamples 1 1 X_100000_Hum1.bam 0 0 1 1 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
174 CGCAATGTACTCTCAAAAATTTAAATTATTGTACCTACATATTGCATACTATGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAACTCATTCTGTCTCCGTACCTCCACCAGCAAAGTT AAAATTAACCAGCAAAGTTAAAAACGCGCAAATATAATTTAAATCGCCTTTTCATTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAATACCGCGACAATAAAAAACAATT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
175 CCTCCACCAGCAAAGTTAAAGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAATTAACCAGCAAAGTTAAAAACGCGCAAATATAATTTAAATCGCCTTTTCATTTTGAC + 85872 51 X_100000_Hum1.bam @HWI-18346568/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
176 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
177 28 I 44 NT 44 "ACTAATGTAATACTTACCTCAAAACTACCTCTCACCAAATGCAC" ChrID X BP 90866 90867 BP_range 90866 90870 Supports 2 2 + 2 2 - 0 0 S1 3 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 7 8 2 2 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
178 TCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACCTGAAAAAATAAAATAAAAACAAATTAACGCATTCACAAAAACAAATAACTAATGTAAT ACTTACCTAATTATAACTTTACATTTATTTCATGCCCGTATCGTTGCGGCGGTCCTTGGCAACAAATCCCGGTCCGGCGGCTCCAAGCTGCCAATCCTGACTCAATCGCCACAAGACGCGGCGCA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
179 ATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTATAACTTTACATTTATTTCATGCCCGTATCGTTGCGGCGGTCCTTGGCAACAAATCCCGGTCCGGCG + 90855 0 X_100000_Hum1.bam @HWI-37593252/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
180 ATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTATAACTTTACATTTATTTCATGCCCGTATCGTTGCGGCGGTCCTTGGCAACAAATCCCGGTCCGGCG + 90855 0 X_100000_Hum1.bam @HWI-103189/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
181 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
182 29 I 1 NT 1 "T" ChrID X BP 94431 94432 BP_range 94431 94434 Supports 20 20 + 8 8 - 12 12 S1 117 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 6 6 8 8 12 12
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
183 TATTTCAACAAAATACTTATCTAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAA TTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAACGCAATTAATAAATCAATTAAATACAAGTATAAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
184 AAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGT + 94305 0 X_100000_Hum1.bam @HWI-8452747/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
185 TACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAACGCAATTAATAAATC + 94413 0 X_100000_Hum1.bam @HWI-27853291/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
186 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCTTAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAA - 94513 0 X_100000_Hum1.bam @HWI-40914648/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
187 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAGCAATCATAACACTCACCTTCAGATTAGCTTCC - 94488 0 X_100000_Hum1.bam @HWI-39998802/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
188 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGT - 94497 0 X_100000_Hum1.bam @HWI-34538004/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
189 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCC - 94488 0 X_100000_Hum1.bam @HWI-27434584/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
190 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGT - 94497 0 X_100000_Hum1.bam @HWI-16862748/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
191 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGT + 94327 0 X_100000_Hum1.bam @HWI-15266293/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
192 AAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAA - 94512 0 X_100000_Hum1.bam @HWI-9722032/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
193 CAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAACGCAATTA + 94406 0 X_100000_Hum1.bam @HWI-13784344/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
194 ACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAACGCAATT - 94704 0 X_100000_Hum1.bam @HWI-12295663/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
195 ATAAAGGGCCTCCTAATATATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAATCATAACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATAC - 94641 0 X_100000_Hum1.bam @HWI-13509398/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
196 CGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAA + 94323 0 X_100000_Hum1.bam @HWI-20500475/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
197 CAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACAAAAACAA - 94657 0 X_100000_Hum1.bam @HWI-24266208/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
198 TAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAAACA - 94497 0 X_100000_Hum1.bam @HWI-15266293/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
199 ATCTAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAAA - 94501 0 X_100000_Hum1.bam @HWI-8667848/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
200 TATCTAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAA - 94456 0 X_100000_Hum1.bam @HWI-20500475/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
201 TATCTAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAA + 94323 0 X_100000_Hum1.bam @HWI-40640722/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
202 TATCTAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCATAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACCATAAA + 94323 0 X_100000_Hum1.bam @HWI-22627520/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
203 ATACTTATCTAATTGCCAATTCGACGACTCCAAATCCGCGGCACACCGGCGGCGATGGCCCGTAAATAAAGGGCCTCCTAATAAATTACAAAACGTACCTGAAAAACCAAAAATTTAACGCAACC + 94318 0 X_100000_Hum1.bam @HWI-26871085/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
204 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
205 30 I 4 NT 4 "AAAC" ChrID X BP 94588 94589 BP_range 94588 94592 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 14 14 1 1 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
206 ACACTCACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAACGCAATTAATAAATCAATTAAATACAAGTATAACACTTACCTCCAAGCTAATGTACCTGAAAAACA AAAACAAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTAAAAAACAAAAAATTTAATACAATCTTAAAAGCAAATAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
207 TCAAAGCTAATGTACCTGAAAAACTAAACAAAACAAAAATAATTA + 94339 0 X_100000_Hum1.bam @HWI-16455266/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
208 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
209 31 I 1 NT 1 "A" ChrID X BP 94593 94594 BP_range 94593 94602 Supports 6 6 + 3 3 - 3 3 S1 16 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 15 14 3 3 3 3
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
210 CACCTTCAGATTAGCTTCCACCTAATGTACCTGAAATACAAAAACAATAATTAACGCAATTAATAAATCAATTAAATACAAGTATAACACTTACCTCCAAGCTAATGTACCTGAAAAACAAAAAC AAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTAAAAAACAAAAAATTTAATACAATCTTAAAAGCAAATAACAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
211 AAAACAAAAACAAAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAACCAATGTACCTAAAAAACAAAAAATTTAATACAATCTTAAAAG - 94867 0 X_100000_Hum1.bam @HWI-15976189/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
212 AAAACAAAAACAAAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAACCAATGTACCTAAAAAACAAAAAATTTAATACAATCTTAAAAG - 94754 0 X_100000_Hum1.bam @HWI-12772747/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
213 CCAAGCTAATGTACCTGAAAAACAAAAACAAAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAACCAATGTACCTAAAAAACAAAAAAT + 94564 0 X_100000_Hum1.bam @HWI-45117575/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
214 CCAAGCTAATGTACCTGAAAAACAAAAACAAAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAACCAATGTACCTAAAAAACAAAAAAT + 94564 0 X_100000_Hum1.bam @HWI-42539010/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
215 CCAAGCTAATGTACCTGAAAAACAAAAACAAAAAAAAATTAATTCAATAAATAAATCAAATAAATACAAATATAATACTTACCTCCAATTTACCTCCCAACCAATGTACCTAAAAAACAAAAAAT + 94564 0 X_100000_Hum1.bam @HWI-27918485/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
216 GTACCTGAAATACAAAAACAATAATTAACGCAATTAATAAATCAATTAAATACAAGTATAACACTTACCTCCAAGCTAATGTACCTGAAAAACAAAAACAAAAAAAAATTAATTCAATAAATAAA - 94658 0 X_100000_Hum1.bam @HWI-21816194/1