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annotate test-data/X_100000_Hum1.bam_Tandem_Duplications.txt @ 1:078c6ab38858 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
author artbio
date Tue, 13 Feb 2024 10:53:40 +0000
parents decc6b5631dc
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
1 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
2 0 TD 73649 NT 0 "" ChrID X BP 886 74536 BP_range 886 74536 Supports 12 12 + 12 12 - 0 0 S1 13 SUM_MS 347 1 NumSupSamples 1 1 X_100000_Hum1.bam 31 1 12 12 0 0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
3 CGTAAAAGACTATATGCGTAACATATCCTTCCCTGATTACCACCCAACTAATATTATCTTAGCTACATATGCAGATGATACCATAATTCTTAGCCGGTCCAAATATACCAAGCTTGCGATCAACTtaaatcaaaactaccttaacgtcttctgtaggtggtcaaaaaaatgggacatagcaattaatgcaaaaaaaaccggacacattcttttctccctaaaaaaagaacaaactaatatatacactccc
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
4 AGCTTGCGATCAACTTAAATCAAAATTACC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
5 + 74277 24 X_100000_Hum1.bam @HWI-27065092/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
6 CCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTTAAAAAAAGAACAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
7 + 74438 43 X_100000_Hum1.bam @HWI-14387472/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
8 TACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTTAAAAAAAGAAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
9 + 74369 24 X_100000_Hum1.bam @HWI-13158805/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
10 CGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
11 + 74361 24 X_100000_Hum1.bam @HWI-36846840/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
12 CGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
13 + 74316 24 X_100000_Hum1.bam @HWI-31272692/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
14 CGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
15 + 74316 24 X_100000_Hum1.bam @HWI-31241471/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
16 CGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
17 + 74361 24 X_100000_Hum1.bam @HWI-23526438/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
18 CGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
19 + 74465 44 X_100000_Hum1.bam @HWI-1105161/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
20 CGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCTCCTT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
21 + 74361 24 X_100000_Hum1.bam @HWI-799738/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
22 TAGCCGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
23 + 74316 24 X_100000_Hum1.bam @HWI-45384311/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
24 TAGCCGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGCAATTAACGCAAAAAAAACCGGACACATTCTTTTCT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
25 + 74316 24 X_100000_Hum1.bam @HWI-23069738/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
26 ATCTTAGCTACATATGCAGACGATACCATTATTCTTAGCCGGTCCAAATATACCAAGCTTGCGATCAACTTAAATCAAAATTACCTTGACGTCTTCTGTAGGTGGTCAAAAAAATGGGACATAGC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
27 + 74465 44 X_100000_Hum1.bam @HWI-1105161/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
28 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
29 1 TD 504 NT 0 "" ChrID X BP 3407 3912 BP_range 3407 3912 Supports 4 4 + 4 4 - 0 0 S1 5 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 12 1 4 4 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
30 CAGACTATTTTTCCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAaaaaattacagaaatcacaaaaataaataacaaatgctatacttacctaattttaatattacacccattcccatggcccaatctttgggcggtccccagcaacaattcctgacccggaacattct
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
31 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
32 + 3575 0 X_100000_Hum1.bam @HWI-18471672/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
33 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAATT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
34 + 3759 0 X_100000_Hum1.bam @HWI-25620164/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
35 CTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
36 + 3837 0 X_100000_Hum1.bam @HWI-35518358/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
37 CTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
38 + 3837 0 X_100000_Hum1.bam @HWI-27938133/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
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diff changeset
39 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
40 2 TD 52474 NT 0 "" ChrID X BP 3444 55919 BP_range 3444 55919 Supports 2 2 + 2 2 - 0 0 S1 3 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 13 1 2 2 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
41 ACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTtatacttacctaattttaatattacacccattcccatggcccaatctttgggcggtccccagcaacaattcctgacccggaacattctaaaataataggaaaataaataagattgcgactcaaaa
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
42 AGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAATTTTAATATTACATCCAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
43 + 55888 0 X_100000_Hum1.bam @HWI-32680310/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
44 ATACAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACCTAATTTTAATATTACATCCATT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
45 + 55877 0 X_100000_Hum1.bam @HWI-30087311/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
46 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
47 3 TD 51972 NT 0 "" ChrID X BP 3910 55883 BP_range 3910 55883 Supports 11 11 + 8 8 - 3 3 S1 36 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 1 1 8 8 3 3
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
48 CAGACTATTTTTCCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAaaaaattagagaaatcacaaaaataaataacaaaggttatacttacctaaaatttaatattacatccattcccatggcccaatcgttgcggcggtcctcagcaacaattcctgacccggaacatc
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
49 TATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
50 + 55800 0 X_100000_Hum1.bam @HWI-45814234/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
51 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAATAACAAAGGTTATACTTACC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
52 + 55756 0 X_100000_Hum1.bam @HWI-36765844/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
53 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAACCACAAAAATAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
54 + 55741 0 X_100000_Hum1.bam @HWI-35470691/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
55 CCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
56 + 55741 0 X_100000_Hum1.bam @HWI-29602246/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
57 CCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
58 + 55785 0 X_100000_Hum1.bam @HWI-13515042/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
59 ACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATATAAAAAATTAGAGAAATCACAAAAATAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
60 + 55784 0 X_100000_Hum1.bam @HWI-37954302/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
61 ACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAAATAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
62 - 4010 0 X_100000_Hum1.bam @HWI-45525114/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
63 AACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
64 - 4048 0 X_100000_Hum1.bam @HWI-18344603/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
65 AACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAAATCACAAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
66 - 4048 0 X_100000_Hum1.bam @HWI-1724059/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
67 CTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
68 + 55770 0 X_100000_Hum1.bam @HWI-2919186/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
69 CCTCCCGAAAAACATACCTGGAAAACAAAAACAAGGCAACTATATAAACAAATAAATACATATATAATACTTACATCCAAACTACATTCCACCTAATGTATCTGAGAAATACAAAAAATTAGAGA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
70 + 55769 0 X_100000_Hum1.bam @HWI-19871417/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
71 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
72 4 TD 60073 NT 0 "" ChrID X BP 5930 66004 BP_range 5930 66004 Supports 7 7 + 5 5 - 2 2 S1 18 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 18 16 5 5 2 2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
73 TAATCCGCGCTTTCCCTTGCTAAATATTCTGACGCGCAAATATAATTTAAATCGCCTTTTCTTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAtaaaaaacaattaatcgacaaacgaaaagcgaacaattacacttgtgcaaaatcgacaagctgccgttataacaaaaaggagacgaataaccacaaagaactaaagttaaactaccagcaaagtt
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
74 CAATAAAAAAAAAACAATTAATCGACAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
75 + 66000 0 X_100000_Hum1.bam @HWI-24777307/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
76 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
77 + 66000 0 X_100000_Hum1.bam @HWI-45677736/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
78 CAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAACCACAAAGAACTAAAGTTAAACTACCAG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
79 + 66000 0 X_100000_Hum1.bam @HWI-1340718/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
80 TTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
81 - 6324 0 X_100000_Hum1.bam @HWI-16849452/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
82 CTTTTCGTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAACAATTAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
83 + 65933 0 X_100000_Hum1.bam @HWI-31804145/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
84 CTTTTCGTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAACAATTAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
85 + 65933 0 X_100000_Hum1.bam @HWI-30434545/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
86 CTTTTCGTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAACAATTAATCGAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
87 - 6088 0 X_100000_Hum1.bam @HWI-43881794/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
88 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
89 5 TD 60074 NT 0 "" ChrID X BP 5930 66005 BP_range 5930 66005 Supports 5 5 + 2 2 - 3 3 S1 12 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 18 16 2 2 3 3
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
90 AATCCGCGCTTTCCCTTGCTAAATATTCTGACGCGCAAATATAATTTAAATCGCCTTTTCTTTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAtaaaaaacaattaatcgacaaacgaaaagcgaacaattacacttgtgcaaaatcgacaagctgccgttataacaaaaaggagacgaataaccacaaagaactaaagttaaactaccagcaaagtt
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
91 CAAAGTTAAAACCGCGACAATAAAAAAAAAAACAATTAATCGACAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
92 - 6113 0 X_100000_Hum1.bam @HWI-26602340/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
93 CTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAAACAATTA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
94 + 65969 0 X_100000_Hum1.bam @HWI-29441672/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
95 CTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
96 + 65969 0 X_100000_Hum1.bam @HWI-5700068/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
97 CTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAAACAATTAATCGACAAACGAAAAGCGAACAATTACACTTGTGCAAAATCGACAAGCTGCCGTTATAACAAAAAGGAGACGAATAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
98 - 6148 0 X_100000_Hum1.bam @HWI-27434100/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
99 TTTCATTTTGACAAATTAAAAGTTTAAATATTGTCTTCCGGCCGCAAAGTTAAAACCGCGACAATAAAAAAAAAAACAATTAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
100 - 6259 0 X_100000_Hum1.bam @HWI-28997954/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
101 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
102 6 TD 32724 NT 0 "" ChrID X BP 62849 95574 BP_range 62849 95574 Supports 13 13 + 4 4 - 9 9 S1 50 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 5 3 4 4 9 9
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
103 TGTTAAACCTATAAATTCAAATAATTGTACCTATATATTGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAgcaataaataaatcaaataaatacaaacataatacttacctccaatttacctcccagccaatgtacctgaaaaacataatctaatacaatctcaaaaacaaataacaaatgtaatacttaccaaa
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
104 AGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACAAATAACAAATGTAATAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
105 + 95406 0 X_100000_Hum1.bam @HWI-43434438/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
106 AGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACAAATAACAAATGTAATAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
107 + 95406 0 X_100000_Hum1.bam @HWI-8805597/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
108 AAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACAAATAACAAATGTAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
109 + 95334 0 X_100000_Hum1.bam @HWI-23275593/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
110 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
111 - 62995 0 X_100000_Hum1.bam @HWI-42119375/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
112 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
113 - 62995 0 X_100000_Hum1.bam @HWI-18910856/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
114 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
115 - 62995 0 X_100000_Hum1.bam @HWI-18358275/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
116 CGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATCTCAAAAACA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
117 - 62995 0 X_100000_Hum1.bam @HWI-14417818/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
118 CTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATAATCTAATACAATC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
119 - 62974 0 X_100000_Hum1.bam @HWI-28479484/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
120 GGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATACTTACCTCCAATTTACCTCCCAGCCAATGTACCTGAAAAACATA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
121 + 95480 0 X_100000_Hum1.bam @HWI-8706175/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
122 TATTGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
123 - 62884 0 X_100000_Hum1.bam @HWI-39391996/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
124 TATAGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
125 - 62884 0 X_100000_Hum1.bam @HWI-44227324/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
126 TATTGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAATAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
127 - 62884 0 X_100000_Hum1.bam @HWI-18610394/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
128 ATATATTGCACATACTGTAATCAAAGGCAAAATAAATCGTGGATGCGGAACAGAATTTACTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAGCAATAAATAAATCAAATAAATACAAACATAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
129 - 62974 0 X_100000_Hum1.bam @HWI-8706175/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
130 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
131 7 TD 5985 NT 0 "" ChrID X BP 65295 71281 BP_range 65295 71281 Supports 2 2 + 2 2 - 0 0 S1 3 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 17 13 2 2 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
132 GGTAGAGACAACCACCAAATGACAGCGGCGCGGGATGCAGCCACCATCTTTGAACTACCTGCAACGTTGGCCGGACATACATGTTGCAAGTGGCGCGCACCCAGCGCCTGCAACAGGCCCCTGCCaaaatcaacaaatactcacctgcaacgtctcctgaagcttcctgcgactcggtgcttccgtccttctggcgggggtacctgaaaagaaacaaattaagcaatgttagtcttaaatgtcaatgttt
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
133 CGTTGGCCGGACATACATGTTGCAAGTGGCGCGCACCCAGCGCCTGCAACAGGCCCCTGCCAAAATCAACAAACACTCACCTGCAACGTCTCCTGAAGCTTCCTGCGACTCGGTGCTTCCGTCCT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
134 + 71109 0 X_100000_Hum1.bam @HWI-36991539/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
135 GAACTACCTGCAACGTTGGCCGGACATACATGTTGCAAGTGGCGCGCACCCAGCGCCTGCAACAGGCCCCTGCCAAAATCAACAAATACTCACCTGCAACGTCTCCTGAAGCTTCCTGCGACTCG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
136 + 71156 0 X_100000_Hum1.bam @HWI-31795637/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
137 ####################################################################################################
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
138 8 TD 6280 NT 0 "" ChrID X BP 84526 90807 BP_range 84526 90807 Supports 9 9 + 4 4 - 5 5 S1 30 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 16 10 4 4 5 5
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
139 TAATACTCACCCCAGACTAGCTCCCTCCAAACGTACCTGAAAAACAAAATCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCAaactaatgtaatacttacctaattataactttacatttatttcatgcccgtatcgttgcggcggtccttggcaacaaatcccggtccggcggctccaagctgccaatcctgactcaatcgccaca
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
140 AAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTATAACTTTACATTTATTTCATGCCCGTATCGTTGCGGCGGTCCTTGGC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
141 + 90855 0 X_100000_Hum1.bam @HWI-37520992/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
142 CTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTATAACTTTACATTTATTTCATGCCCGTATCGTTGCGGCGGTCCTTGGCAACAAATCCCGGTCCGGCGGCTCCAAG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
143 + 90730 0 X_100000_Hum1.bam @HWI-9842854/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
144 TCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTATAACTTTACATTTATTTCATGCCCGTATCGTTGCG
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
145 + 90707 0 X_100000_Hum1.bam @HWI-28658481/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
146 TCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTATAACTTTACATTTATTTCATGCCC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
147 - 84652 0 X_100000_Hum1.bam @HWI-9842854/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
148 CCAAACGTACCTGAAAAACAAAATCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
149 + 90707 0 X_100000_Hum1.bam @HWI-28658481/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
150 CCAAACGTACCTGAAAAACAAAATCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
151 - 84600 0 X_100000_Hum1.bam @HWI-3102178/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
152 CCAAACGTACCTGAAAAACAAAATCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
153 - 84490 0 X_100000_Hum1.bam @HWI-27052876/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
154 CCAAACGTACCTGAAAAACAAAATCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
155 - 84490 0 X_100000_Hum1.bam @HWI-21873573/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
156 CCAAACGTACCTGAAAAACAAAATCAAAATTAAATCAAACATAAAAACAAATAAATAATAAAATAATACTTACCTCAAAACTACCTCTCACCAAATGCACACTAATGTAATACTTACCTAATTAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
157 - 84490 0 X_100000_Hum1.bam @HWI-5331471/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
158 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
159 9 TD 55836 NT 2 "AA" ChrID X BP 9868 65705 BP_range 9868 65705 Supports 4 4 + 0 0 - 4 4 S1 5 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 11 0 0 0 4 4
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
160 TAAAATCTAAAAATCGAAATTATTGTACCTATATATTACAAAAACTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAA agttgacgctaaaacctaaaaacaaacaacaacaaattaaatacaaacaaataaaataaaatcaaacaaaacacttacctcactgacaacagccaattactgatccacattcaacgcaacagaca
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
161 TGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAAAGTTGACGCTAAAACCTAAAAACAAACAACAACAAATTAAATACAAACAAATAAAATAAAATCAAAC
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
162 - 9993 0 X_100000_Hum1.bam @HWI-24932951/2
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
163 AAAAACTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAAAGTTGACGCTAAAACCTAAAAACAAACAACAACAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
164 - 9905 0 X_100000_Hum1.bam @HWI-46415327/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
165 AAAAACTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAAAGTTGACGCTAAAACCTAAAAACAAACAACAACAAAT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
166 - 9905 0 X_100000_Hum1.bam @HWI-33395688/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
167 CTATATATTACAAAAACTGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAATTTTATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAAAAAAAGTTGACGCTAAAACCTAAAAACAAA
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
168 - 9993 0 X_100000_Hum1.bam @HWI-24932951/1
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
169 ####################################################################################################
1
078c6ab38858 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 90fe127eb55d6ec4f99a37f7049527b6898e66a4
artbio
parents: 0
diff changeset
170 10 TD 63 NT 79 "TATTCTGTCTCCGTACCTCCACCAGCAAAGTAAAAAACCACCAGCAAAGTTAAAAAAAAAGCTTTGCTTGCCAAAAAAC" ChrID X BP 85861 85925 BP_range 85861 85925 Supports 1 1 + 1 1 - 0 0 S1 2 SUM_MS 0 1 NumSupSamples 1 1 X_100000_Hum1.bam 10 0 1 1 0 0
0
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
171 AATGTACTCTCAAAAATTTAAATTATTGTACCTACATATTGCATACTATGTAATCAAAGGCAAAATAAATTGTGGATGCGGAACAGAACTCATTCTGTCTCCGTACCTCCACCAGCAAAGTTAAA aaataaattgtggatgcggaacagaactcattctgtctccgtacctccaccagcaaagttaaaattaaccagcaaagttaaaaacgcgcaaatataatttaaatcgccttttcattttgacaaat
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
172 TCCGTACCTCCACCAGCAAAGTTAAATATTCTGTCTCCGTACCTCCACCAGCAAAGTAAAAAACCACCAGCAAAGTTAAAAAAAAAGCTTTGCTTGCCAAAAAACAAATAAATAGT
decc6b5631dc "planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/pindel commit 9bae2cc35b71dabcb73cd586eb1bdc458132548c"
artbio
parents:
diff changeset
173 + 85619 0 X_100000_Hum1.bam @HWI-18164980/2