view test-data/edgeR_result_file.tab @ 12:89e05f831259 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/main/tools/repenrich commit 212b838f614f1f7b8e770473c026d9c1180722df
author artbio
date Mon, 18 Mar 2024 09:39:44 +0000
parents 6bba3e33c2e7
children 530626b0757c
line wrap: on
line source

TE_item	log2FC	FDR	Class	Type
DM297_I-int	 2.69047105	4.4945e-21	LTR	Gypsy
DM297_LTR	 1.74961921	1.3397e-18	LTR	Gypsy
Gypsy1-I_DM	 2.37388633	4.4803e-16	LTR	Gypsy
NOF_FB	-2.79644759	4.4803e-16	DNA	MULE-NOF
G7_DM	 3.25987375	1.5530e-15	LINE	Jockey
Gypsy_I-int	 1.74702180	4.3525e-12	LTR	Gypsy
LINEJ1_DM	 1.94429218	5.1807e-12	LINE	Jockey
TOM_I-int	 1.33935222	6.6923e-12	LTR	Gypsy
GTWIN_LTR	 1.89490932	8.8059e-12	LTR	Gypsy
Gypsy_LTR	 1.56024436	2.9985e-11	LTR	Gypsy
DM1731_I-int	 1.53134430	6.4921e-10	LTR	Copia
Gypsy6_LTR	 1.53023046	1.0751e-06	LTR	Gypsy
LOOPER1_DM	-2.46983670	1.6192e-06	DNA	PiggyBac
TIRANT_LTR	 1.12203469	1.7801e-06	LTR	Gypsy
Gypsy12_I-int	-1.12204057	2.1949e-06	LTR	Gypsy
R2_DM	 1.67889583	2.7304e-06	LINE	R2
TRANSPAC_LTR	 1.49364968	2.9021e-06	LTR	Gypsy
Copia_LTR	 1.66649088	1.1860e-05	LTR	Copia
ACCORD_LTR	 1.37240595	1.7595e-05	LTR	Gypsy
TIRANT_I-int	 1.17728139	2.0469e-05	LTR	Gypsy
TART_B1	-1.14695346	3.0966e-05	LINE	Jockey
TRANSIB1	-1.39021194	6.1650e-05	DNA	CMC-Transib
DM412B_LTR	 0.80309005	1.2443e-04	LTR	Gypsy
MICROPIA_LTR	-1.29556276	1.2985e-04	LTR	Gypsy
G6_DM	-1.05894869	1.3831e-04	LINE	Jockey
NINJA_I-int	-0.87426452	1.5554e-04	LTR	Pao
R1_DM	 0.95590515	1.8985e-04	LINE	R1
Invader6_LTR	-1.18865109	2.1299e-04	LTR	Gypsy
Copia_I-int	 1.93316905	2.2313e-04	LTR	Copia
BLASTOPIA_LTR	 1.34881959	3.6488e-04	LTR	Gypsy
LSU-rRNA_Hsa	 2.61189118	8.0160e-04	rRNA	rRNA
TRANSPAC_I-int	 1.16122218	8.4531e-04	LTR	Gypsy
G4_DM	-0.74970144	9.1437e-04	LINE	Jockey
SSU-rRNA_Hsa	 1.12389968	1.0426e-03	rRNA	rRNA
DOC5_DM	-0.80987287	1.6241e-03	LINE	Jockey
Invader1_I-int	 0.74972783	1.9892e-03	LTR	Gypsy
TRANSIB4	-1.00230688	2.0605e-03	DNA	CMC-Transib
MICROPIA_I-int	-0.75119303	2.9293e-03	LTR	Gypsy
PLACW_DM	 1.16310826	3.0518e-03	DNA	P
TABOR_I-int	 0.73770219	3.5495e-03	LTR	Gypsy
I_DM	 1.04141382	4.5715e-03	LINE	I
Gypsy3_I-int	 0.58659480	5.3315e-03	LTR	Gypsy
DOC	 0.94015336	5.5212e-03	LINE	Jockey
Helitron1_DM	-5.10401049	6.3658e-03	RC	Helitron
Invader5_I-int	-0.97342264	6.6603e-03	LTR	Gypsy
ACCORD_I-int	 0.59304769	7.0136e-03	LTR	Gypsy
LSU-rRNA_Dme	 0.90220479	1.0210e-02	rRNA	rRNA
DM412	 0.77597081	1.0808e-02	LTR	Gypsy
NINJA_LTR	-0.92340817	1.0956e-02	LTR	Pao
BATUMI_I-int	-0.56286761	1.4855e-02	LTR	Pao
DMRT1C	-0.66474417	1.7456e-02	LINE	R1
TAHRE	-0.50950303	1.9854e-02	LINE	Jockey
Gypsy8_I-int	-0.57827690	2.4898e-02	LTR	Gypsy
BLASTOPIA_I-int	 0.79698775	3.0182e-02	LTR	Gypsy
DM176_LTR	-0.69138467	4.3254e-02	LTR	Gypsy
DMRT1A	-0.50960841	4.3254e-02	LINE	R1
Gypsy11_I-int	-0.73463462	4.3254e-02	LTR	Gypsy
QUASIMODO2-I_DM	 0.47005794	4.4414e-02	LTR	Gypsy
MuDR-1_DEl	 1.35524443	5.3232e-02	DNA	MULE-NOF
DM1731_LTR	 0.75223818	5.4013e-02	LTR	Copia
FROGGER_I-int	-0.60531971	5.4013e-02	LTR	Copia
MAX_I-int	-0.51645609	6.4340e-02	LTR	Pao
BURDOCK_I-int	 0.41822333	6.9121e-02	LTR	Gypsy
FROGGER_LTR	 0.88832640	7.0636e-02	LTR	Copia
DIVER_I-int	 0.57905223	7.3816e-02	LTR	Pao
Chouto_I-int	-0.55102999	8.1512e-02	LTR	Gypsy
DM176_I-int	 0.38700877	9.1864e-02	LTR	Gypsy
Invader4_I-int	 0.53274705	9.4896e-02	LTR	Gypsy
G3_DM	-0.60764816	1.0316e-01	LINE	Jockey
Gypsy4_LTR	 0.67676363	1.0531e-01	LTR	Gypsy
BATUMI_LTR	-0.62559888	1.1233e-01	LTR	Pao
Gypsy2-I_DM	 0.41886069	1.2754e-01	LTR	Gypsy
Invader3_LTR	-0.55372613	1.3023e-01	LTR	Gypsy
MDG3_I-int	 0.41719543	1.3084e-01	LTR	Gypsy
SSU-rRNA_Dme	 0.50182621	1.3084e-01	rRNA	rRNA
G5A_DM	-0.46837522	1.4239e-01	LINE	Jockey
S2_DM	-0.57644415	1.5438e-01	DNA	TcMar-Tc1
Stalker2_I-int	-0.42481708	1.5792e-01	LTR	Gypsy
BLOOD_LTR	 0.49499975	1.5864e-01	LTR	Gypsy
Invader5_LTR	-0.67598409	1.5864e-01	LTR	Gypsy
R1-2_DM	-0.61185323	1.5864e-01	LINE	R1
Transib5	-0.51646991	1.5864e-01	DNA	CMC-Transib
TLD2	-1.24823549	1.5867e-01	LTR	Gypsy
TC1_DM	 0.40057291	1.6763e-01	DNA	TcMar-Tc1
BS2	-0.33138649	1.8548e-01	LINE	Jockey
ROVER-LTR_DM	-0.52968179	1.8874e-01	LTR	Gypsy
ACCORD2_I-int	-0.35057261	1.9179e-01	LTR	Gypsy
Gypsy12A_LTR	-0.35446551	2.0443e-01	LTR	Gypsy
FW3_DM	-0.47634256	2.1692e-01	LINE	Jockey
ROO_LTR	 0.40023254	2.4447e-01	LTR	Pao
STALKER4_LTR	 0.38334943	2.4826e-01	LTR	Gypsy
POGON1	 0.48250711	2.5578e-01	DNA	TcMar-Pogo
HOBO	-0.28322082	2.7317e-01	DNA	hAT-hobo
BS3_DM	-0.41804161	2.7791e-01	LINE	Jockey
Gypsy9_I-int	-0.43733630	2.8095e-01	LTR	Gypsy
P-1_DY	 0.96941787	2.8095e-01	DNA	P
Bica_I-int	-0.36315185	2.8762e-01	LTR	Gypsy
DMCR1A	-0.34210888	3.2054e-01	LINE	CR1
Mariner2_DM	-0.42211425	3.2054e-01	DNA	TcMar-Tc1
Gypsy7_LTR	-0.48494039	3.2266e-01	LTR	Gypsy
TRANSIB3	 0.34423215	3.2266e-01	DNA	CMC-Transib
DMRPR	 0.47467109	3.6960e-01	Unknown	Unknown
DIVER2_LTR	-0.38136207	3.8446e-01	LTR	Pao
Gypsy1-LTR_DM	 0.34154788	3.8486e-01	LTR	Gypsy
DOC4_DM	 0.36211424	3.8941e-01	LINE	Jockey
SSU-rRNA_Cel	 0.26869336	3.8941e-01	rRNA	rRNA
ZAM_I-int	 0.25296287	3.9720e-01	LTR	Gypsy
XDMR_DM	-0.25621121	4.0891e-01	Unknown	Unknown
Chimpo_LTR	-0.46051522	4.0932e-01	LTR	Gypsy
5S_DM	-0.36064469	4.1204e-01	RNA	RNA
BLOOD_I-int	 0.30119351	4.1204e-01	LTR	Gypsy
CIRCE	-0.21220099	4.1204e-01	LTR	Gypsy
DOC2_DM	-0.21921882	4.1204e-01	LINE	Jockey
HELENA_RT	 0.30671686	4.1204e-01	LINE	Jockey
HETA	-0.29869287	4.1204e-01	LINE	Jockey
Invader2_LTR	-0.34945118	4.1204e-01	LTR	Gypsy
PROTOP	-0.21894181	4.1204e-01	DNA	P
ACCORD2_LTR	-0.37387744	4.1532e-01	LTR	Gypsy
BARI1	-0.36182547	4.3906e-01	DNA	TcMar-Tc1
Copia2_I-int	-0.19965127	4.5402e-01	LTR	Copia
Chouto_LTR	-0.42256719	4.5763e-01	LTR	Gypsy
S_DM	 0.19327510	4.6659e-01	DNA	TcMar-Tc1
Chimpo_I-int	-0.31980269	4.6967e-01	LTR	Gypsy
Gypsy2_LTR	 0.33740593	4.6967e-01	LTR	Gypsy
Gypsy6_I-int	 0.24488785	4.6967e-01	LTR	Gypsy
NOMAD_LTR	-0.31070751	4.6967e-01	LTR	Gypsy
DIVER2_I-int	-0.21740035	4.8214e-01	LTR	Pao
DOC3_DM	-0.22674831	4.9564e-01	LINE	Jockey
XDMR	 0.24963373	5.0355e-01	Unknown	Unknown
ROO_I-int	 0.27660875	5.0509e-01	LTR	Pao
BURDOCK_LTR	 0.32676718	5.1078e-01	LTR	Gypsy
BEL_I-int	 0.23736249	5.3379e-01	LTR	Pao
Invader6_I-int	-0.20526694	5.3379e-01	LTR	Gypsy
ROOA_I-int	-0.19423348	5.3379e-01	LTR	Pao
DIVER_LTR	 0.27103098	5.3662e-01	LTR	Pao
DOC6_DM	 0.22207941	5.3662e-01	LINE	Jockey
GTWIN_I-int	 0.19380839	5.3662e-01	LTR	Gypsy
MAX_LTR	-0.25774945	5.4015e-01	LTR	Pao
Gypsy10_I-int	-0.18883467	5.6847e-01	LTR	Gypsy
Gypsy11_LTR	-0.30451990	5.6847e-01	LTR	Gypsy
Transib-N1_DM	-0.28535954	5.6847e-01	DNA	CMC-Transib
Gypsy8_LTR	-0.22930841	5.7216e-01	LTR	Gypsy
MDG1_LTR	-0.22227823	5.9833e-01	LTR	Gypsy
ARS406_DM	-0.25396979	6.1631e-01	Unknown	Unknown
TRANSIB2	-0.14622244	6.2541e-01	DNA	CMC-Transib
Invader3_I-int	-0.13800579	6.3087e-01	LTR	Gypsy
FW2_DM	 0.18134923	6.3198e-01	LINE	Jockey
Gypsy9_LTR	-0.34138672	6.3739e-01	LTR	Gypsy
PROTOP_A	 0.12947002	6.4158e-01	DNA	P
TART-A	 0.13700066	6.4158e-01	LINE	Jockey
Invader2_I-int	-0.15122431	6.5337e-01	LTR	Gypsy
MDG3_LTR	-0.18866858	6.5337e-01	LTR	Gypsy
Jockey2	-0.16295961	6.5457e-01	LINE	Jockey
POGO	-0.15072772	6.5549e-01	DNA	TcMar-Pogo
Baggins1	-0.13482610	6.9317e-01	LINE	LOA
Bica_LTR	-0.20302797	7.0764e-01	LTR	Gypsy
HMSBEAGLE_I-int	 0.13884460	7.0764e-01	LTR	Gypsy
Stalker3_LTR	-0.17401807	7.0764e-01	LTR	Gypsy
NTS_DM	-0.17655207	7.1269e-01	Other	Other
TABOR_LTR	-0.24324332	7.1269e-01	LTR	Gypsy
ZAM_LTR	 0.18588916	7.1788e-01	LTR	Gypsy
G5_DM	-0.11225655	7.2833e-01	LINE	Jockey
BEL_LTR	 0.15254286	7.5643e-01	LTR	Pao
FB4_DM	-0.11461634	7.5643e-01	DNA	TcMar-Tc1
Invader1_LTR	 0.14121996	7.5643e-01	LTR	Gypsy
QUASIMODO_I-int	 0.12627126	7.5643e-01	LTR	Gypsy
DMRT1B	-0.11123522	7.6005e-01	LINE	R1
NOMAD_I-int	-0.13754670	7.6005e-01	LTR	Gypsy
LmeSINE1c	-0.22854353	7.6030e-01	SINE	tRNA-Deu-L2
Copia2_LTR_DM	 0.14797919	7.6240e-01	LTR	Copia
Gypsy10_LTR	-0.15465107	7.6240e-01	LTR	Gypsy
QUASIMODO2-LTR_DM	-0.15543048	7.6240e-01	LTR	Gypsy
BS4_DM	-0.25325163	8.1092e-01	LINE	Jockey
G_DM	 0.09027859	8.1092e-01	LINE	Jockey
IVK_DM	-0.08072118	8.1871e-01	LINE	I
Gypsy12_LTR	-0.08320455	8.3527e-01	LTR	Gypsy
Gypsy5_I-int	-0.07748073	8.3527e-01	LTR	Gypsy
Gypsy6A_LTR	-0.11623997	8.3527e-01	LTR	Gypsy
IDEFIX_I-int	 0.07819724	8.3527e-01	LTR	Gypsy
DMRP1	 0.10050452	8.4631e-01	Unknown	Unknown
PROTOP_B	-0.07455018	8.4631e-01	DNA	P
Copia1-LTR_DM	-0.09617523	8.5055e-01	LTR	Copia
TC1-2_DM	 0.05957200	8.5307e-01	DNA	TcMar-Tc1
Gypsy7_I-int	 0.08264110	8.6134e-01	LTR	Gypsy
LSU-rRNA_Cel	-0.09208250	8.6134e-01	rRNA	rRNA
DMLTR5	 0.07268948	9.0549e-01	LTR	Gypsy
Gypsy2-LTR_DM	 0.06521928	9.0549e-01	LTR	Gypsy
Gypsy4_I-int	-0.05162740	9.0549e-01	LTR	Gypsy
Gypsy5_LTR	-0.07109800	9.0549e-01	LTR	Gypsy
QUASIMODO_LTR	-0.06434677	9.0549e-01	LTR	Gypsy
Stalker2_LTR	-0.05232101	9.1731e-01	LTR	Gypsy
ROVER-I_DM	-0.04081108	9.2272e-01	LTR	Gypsy
MDG1_I-int	-0.04114242	9.3745e-01	LTR	Gypsy
ALA_DM	-0.11425480	9.4292e-01	Unknown	Unknown
DNAREP1_DM	 0.03935403	9.4292e-01	RC	Helitron
BARI_DM	 0.03727161	9.4985e-01	DNA	TcMar-Tc1
Gypsy2_I-int	-0.02615993	9.5197e-01	LTR	Gypsy
DMTOM1_LTR	 0.03496404	9.5383e-01	LTR	Gypsy
Gypsy3_LTR	-0.02988832	9.5772e-01	LTR	Gypsy
IDEFIX_LTR	 0.02199611	9.5772e-01	LTR	Gypsy
MINOS	 0.03304798	9.5772e-01	DNA	TcMar-Tc1
STALKER4_I-int	 0.02412753	9.5772e-01	LTR	Gypsy
G2_DM	 0.02260980	9.6224e-01	LINE	Jockey
Copia1-I_DM	 0.01242368	9.6305e-01	LTR	Copia
Invader4_LTR	 0.01649543	9.6305e-01	LTR	Gypsy
M4DM	-0.01736598	9.6305e-01	DNA	CMC-Transib
BS	 0.00565217	9.9786e-01	LINE	Jockey
FTZ_DM	 0.00000000	1.0000e+00	Unknown	Unknown
FUSHI_DM	 0.00000000	1.0000e+00	Unknown	Unknown
ROOA_LTR	-0.00054251	1.0000e+00	LTR	Pao