Mercurial > repos > artbio > repenrich
changeset 8:5dd4791c7b70 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/repenrich commit ccf4b178d13aeedf7214f2400e7411bcfa3e73b4
| author | artbio |
|---|---|
| date | Tue, 11 Dec 2018 12:43:07 -0500 |
| parents | 308591fd36e5 |
| children | db32bb7bda01 |
| files | edgeR_repenrich.R edger-repenrich.xml test-data/edgeR_plots.pdf |
| diffstat | 3 files changed, 2 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/edgeR_repenrich.R Tue Dec 11 11:39:22 2018 -0500 +++ b/edgeR_repenrich.R Tue Dec 11 12:43:07 2018 -0500 @@ -203,7 +203,7 @@ types <- with(results, reorder(type, -logFC, median)) boxplot(logFC ~ types, data=results, outline=FALSE, horizontal=TRUE, las=2, xlab="log2(Fold Change)", main=paste0(allcontrasts, ", by Type"), yaxt="n") - axis(2, cex.axis=(1*11)/(length(levels(types))), + axis(2, cex.axis=(1*28)/(length(levels(types))), at=seq(from=1, to=length(levels(types))), labels=levels(types), las=2) abline(v=0)
--- a/edger-repenrich.xml Tue Dec 11 11:39:22 2018 -0500 +++ b/edger-repenrich.xml Tue Dec 11 12:43:07 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.1"> +<tool id="edger-repenrich" name="edgeR-repenrich" version="1.5.2"> <description>Determines differentially expressed features from RepEnrich counts</description> <requirements> <requirement type="package" version="3.16.5">bioconductor-edger</requirement>