Mercurial > repos > artbio > small_rna_maps
comparison small_rna_maps.py @ 32:f2e7ad3058e8 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 51dc6c56c7d95fc229ffee958354211cd454fd36"
author | artbio |
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date | Sun, 09 May 2021 17:11:00 +0000 |
parents | f82badb66c34 |
children |
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31:f82badb66c34 | 32:f2e7ad3058e8 |
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317 Strandbias = strandness['F'] + strandness['R'] | 317 Strandbias = strandness['F'] + strandness['R'] |
318 if Strandbias: | 318 if Strandbias: |
319 Strandbias = round(strandness['F'] / float(Strandbias), 2) | 319 Strandbias = round(strandness['F'] / float(Strandbias), 2) |
320 else: | 320 else: |
321 Strandbias = 2 | 321 Strandbias = 2 |
322 Mean = numpy.mean(sizeness.values()) | 322 Mean = numpy.mean(list(sizeness.values())) |
323 StDev = numpy.std(sizeness.values()) | 323 StDev = numpy.std(list(sizeness.values())) |
324 for size in sizeness: | 324 for size in sizeness: |
325 if StDev: | 325 if StDev: |
326 sizeness[size] = (sizeness[size] - Mean) / StDev | 326 sizeness[size] = (sizeness[size] - Mean) / StDev |
327 else: | 327 else: |
328 sizeness[size] = 0 | 328 sizeness[size] = 0 |