comparison small_rna_maps.py @ 32:f2e7ad3058e8 draft

"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit 51dc6c56c7d95fc229ffee958354211cd454fd36"
author artbio
date Sun, 09 May 2021 17:11:00 +0000
parents f82badb66c34
children
comparison
equal deleted inserted replaced
31:f82badb66c34 32:f2e7ad3058e8
317 Strandbias = strandness['F'] + strandness['R'] 317 Strandbias = strandness['F'] + strandness['R']
318 if Strandbias: 318 if Strandbias:
319 Strandbias = round(strandness['F'] / float(Strandbias), 2) 319 Strandbias = round(strandness['F'] / float(Strandbias), 2)
320 else: 320 else:
321 Strandbias = 2 321 Strandbias = 2
322 Mean = numpy.mean(sizeness.values()) 322 Mean = numpy.mean(list(sizeness.values()))
323 StDev = numpy.std(sizeness.values()) 323 StDev = numpy.std(list(sizeness.values()))
324 for size in sizeness: 324 for size in sizeness:
325 if StDev: 325 if StDev:
326 sizeness[size] = (sizeness[size] - Mean) / StDev 326 sizeness[size] = (sizeness[size] - Mean) / StDev
327 else: 327 else:
328 sizeness[size] = 0 328 sizeness[size] = 0