Mercurial > repos > artbio > small_rna_maps

changeset 4:a6b9a081064b draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps commit b58cb36616bf351278e57ec1949e9ebf3c3cdff1
author artbio
date Fri, 25 Aug 2017 12:22:03 -0400
parents ed8b0142538d
children 12c14642e6ac
files small_rna_maps.py small_rna_maps.xml test-data/coverage.pdf test-data/double_mean.tab test-data/doubled_mean.pdf test-data/doubled_readmap.tab test-data/mean.pdf test-data/mean.tab test-data/median.pdf test-data/median.tab test-data/readmap.tab test-data/sizes.pdf
diffstat 12 files changed, 6 insertions(+), 12692 deletions(-) [+]
line wrap: on
line diff
--- a/small_rna_maps.py	Tue Aug 22 12:05:47 2017 -0400
+++ b/small_rna_maps.py	Fri Aug 25 12:22:03 2017 -0400
@@ -44,9 +44,6 @@
         for chrom in self.chromosomes:
             for read in bam_object.fetch(chrom):
                 positions = read.positions  # a list of covered positions
-                for pos in positions:
-                    if not map_dictionary[(chrom, pos+1, 'F')]:
-                        map_dictionary[(chrom, pos+1, 'F')] = []
                 if read.is_reverse:
                     map_dictionary[(chrom, positions[-1]+1,
                                     'R')].append(read.query_alignment_length)
@@ -120,6 +117,11 @@
         for chrom in self.chromosomes:
             coverage_dictionary[(chrom, 1, 'F')] = 0
             coverage_dictionary[(chrom, self.chromosomes[chrom], 'F')] = 0
+            for read in self.bam_object.fetch(chrom):
+                positions = read.positions  # a list of covered positions
+                for pos in positions:
+                    if not map_dictionary[(chrom, pos+1, 'F')]:
+                        map_dictionary[(chrom, pos+1, 'F')] = []
         for key in map_dictionary:
             coverage = self.bam_object.count_coverage(
                                                 reference=key[0],
--- a/small_rna_maps.xml	Tue Aug 22 12:05:47 2017 -0400
+++ b/small_rna_maps.xml	Fri Aug 25 12:22:03 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="small_rna_maps" name="small_rna_maps" version="1.0.1">
+<tool id="small_rna_maps" name="small_rna_maps" version="1.1.0">
   <description></description>
   <requirements>
         <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
Binary file test-data/coverage.pdf has changed
--- a/test-data/double_mean.tab	Tue Aug 22 12:05:47 2017 -0400
+++ b/test-data/double_mean.tab	Fri Aug 25 12:22:03 2017 -0400
@@ -1,128 +1,41 @@
 Dataset	Chromosome	Chrom_length	Coordinate	Polarity	Mean
 input1.bam_0	FBtr0070001	72	1	F	17.0
-input1.bam_0	FBtr0070001	72	2	F	0
-input1.bam_0	FBtr0070001	72	3	F	0
-input1.bam_0	FBtr0070001	72	4	F	0
-input1.bam_0	FBtr0070001	72	5	F	0
-input1.bam_0	FBtr0070001	72	6	F	0
 input1.bam_0	FBtr0070001	72	7	F	20.3
 input1.bam_0	FBtr0070001	72	8	F	21.3
-input1.bam_0	FBtr0070001	72	9	F	0
-input1.bam_0	FBtr0070001	72	10	F	0
 input1.bam_0	FBtr0070001	72	11	F	20.5
-input1.bam_0	FBtr0070001	72	12	F	0
-input1.bam_0	FBtr0070001	72	13	F	0
-input1.bam_0	FBtr0070001	72	14	F	0
-input1.bam_0	FBtr0070001	72	15	F	0
 input1.bam_0	FBtr0070001	72	16	F	19.0
 input1.bam_0	FBtr0070001	72	17	F	23.0
 input1.bam_0	FBtr0070001	72	18	F	16.0
-input1.bam_0	FBtr0070001	72	19	F	0
-input1.bam_0	FBtr0070001	72	20	F	0
-input1.bam_0	FBtr0070001	72	21	F	0
-input1.bam_0	FBtr0070001	72	22	F	0
-input1.bam_0	FBtr0070001	72	23	F	0
-input1.bam_0	FBtr0070001	72	24	F	0
-input1.bam_0	FBtr0070001	72	25	F	0
-input1.bam_0	FBtr0070001	72	26	F	0
 input1.bam_0	FBtr0070001	72	27	F	23.5
-input1.bam_0	FBtr0070001	72	28	F	0
-input1.bam_0	FBtr0070001	72	29	F	0
 input1.bam_0	FBtr0070001	72	30	F	23.0
 input1.bam_0	FBtr0070001	72	31	F	23.0
 input1.bam_0	FBtr0070001	72	32	F	22.0
-input1.bam_0	FBtr0070001	72	33	F	0
 input1.bam_0	FBtr0070001	72	34	F	20.0
-input1.bam_0	FBtr0070001	72	35	F	0
-input1.bam_0	FBtr0070001	72	36	F	0
-input1.bam_0	FBtr0070001	72	37	F	0
-input1.bam_0	FBtr0070001	72	38	F	0
-input1.bam_0	FBtr0070001	72	39	F	0
-input1.bam_0	FBtr0070001	72	40	F	0
-input1.bam_0	FBtr0070001	72	41	F	0
-input1.bam_0	FBtr0070001	72	42	F	0
-input1.bam_0	FBtr0070001	72	43	F	0
-input1.bam_0	FBtr0070001	72	44	F	0
-input1.bam_0	FBtr0070001	72	45	F	0
-input1.bam_0	FBtr0070001	72	46	F	0
-input1.bam_0	FBtr0070001	72	47	F	0
-input1.bam_0	FBtr0070001	72	48	F	0
-input1.bam_0	FBtr0070001	72	49	F	0
-input1.bam_0	FBtr0070001	72	50	F	0
-input1.bam_0	FBtr0070001	72	51	F	0
-input1.bam_0	FBtr0070001	72	52	F	0
-input1.bam_0	FBtr0070001	72	53	F	0
 input1.bam_0	FBtr0070001	72	72	F	0
 input1.bam_0	FBtr0070533	72	1	F	15.0
-input1.bam_0	FBtr0070533	72	2	F	0
-input1.bam_0	FBtr0070533	72	3	F	0
-input1.bam_0	FBtr0070533	72	4	F	0
-input1.bam_0	FBtr0070533	72	5	F	0
-input1.bam_0	FBtr0070533	72	6	F	0
-input1.bam_0	FBtr0070533	72	7	F	0
-input1.bam_0	FBtr0070533	72	8	F	0
-input1.bam_0	FBtr0070533	72	9	F	0
-input1.bam_0	FBtr0070533	72	10	F	0
-input1.bam_0	FBtr0070533	72	11	F	0
 input1.bam_0	FBtr0070533	72	12	F	18.0
-input1.bam_0	FBtr0070533	72	13	F	0
-input1.bam_0	FBtr0070533	72	14	F	0
 input1.bam_0	FBtr0070533	72	15	F	15.0
-input1.bam_0	FBtr0070533	72	16	F	0
-input1.bam_0	FBtr0070533	72	17	F	0
-input1.bam_0	FBtr0070533	72	18	F	0
 input1.bam_0	FBtr0070533	72	19	F	21.8
 input1.bam_0	FBtr0070533	72	20	F	23.0
 input1.bam_0	FBtr0070533	72	21	F	18.0
 input1.bam_0	FBtr0070533	72	22	F	20.0
-input1.bam_0	FBtr0070533	72	23	F	0
-input1.bam_0	FBtr0070533	72	24	F	0
 input1.bam_0	FBtr0070533	72	25	F	17.0
 input1.bam_0	FBtr0070533	72	26	F	16.0
-input1.bam_0	FBtr0070533	72	27	F	0
 input1.bam_0	FBtr0070533	72	28	F	25.0
-input1.bam_0	FBtr0070533	72	29	F	0
-input1.bam_0	FBtr0070533	72	30	F	0
-input1.bam_0	FBtr0070533	72	31	F	0
 input1.bam_0	FBtr0070533	72	32	F	20.5
-input1.bam_0	FBtr0070533	72	33	F	0
-input1.bam_0	FBtr0070533	72	34	F	0
 input1.bam_0	FBtr0070533	72	35	F	19.0
-input1.bam_0	FBtr0070533	72	36	F	0
 input1.bam_0	FBtr0070533	72	37	F	19.0
 input1.bam_0	FBtr0070533	72	38	F	18.0
-input1.bam_0	FBtr0070533	72	39	F	0
-input1.bam_0	FBtr0070533	72	40	F	0
-input1.bam_0	FBtr0070533	72	41	F	0
-input1.bam_0	FBtr0070533	72	42	F	0
-input1.bam_0	FBtr0070533	72	43	F	0
-input1.bam_0	FBtr0070533	72	44	F	0
-input1.bam_0	FBtr0070533	72	45	F	0
-input1.bam_0	FBtr0070533	72	46	F	0
-input1.bam_0	FBtr0070533	72	47	F	0
-input1.bam_0	FBtr0070533	72	48	F	0
-input1.bam_0	FBtr0070533	72	49	F	0
-input1.bam_0	FBtr0070533	72	50	F	0
-input1.bam_0	FBtr0070533	72	51	F	0
-input1.bam_0	FBtr0070533	72	52	F	0
-input1.bam_0	FBtr0070533	72	53	F	0
-input1.bam_0	FBtr0070533	72	54	F	0
-input1.bam_0	FBtr0070533	72	55	F	0
 input1.bam_0	FBtr0070533	72	72	F	0
 input1.bam_0	FBtr0070603	72	1	F	16.5
-input1.bam_0	FBtr0070603	72	2	F	0
 input1.bam_0	FBtr0070603	72	3	F	21.0
 input1.bam_0	FBtr0070603	72	4	F	20.0
-input1.bam_0	FBtr0070603	72	5	F	0
 input1.bam_0	FBtr0070603	72	6	F	18.0
 input1.bam_0	FBtr0070603	72	7	F	17.1
 input1.bam_0	FBtr0070603	72	8	F	16.0
 input1.bam_0	FBtr0070603	72	9	F	15.0
-input1.bam_0	FBtr0070603	72	10	F	0
-input1.bam_0	FBtr0070603	72	11	F	0
 input1.bam_0	FBtr0070603	72	12	F	20.0
 input1.bam_0	FBtr0070603	72	13	F	22.0
-input1.bam_0	FBtr0070603	72	14	F	0
 input1.bam_0	FBtr0070603	72	15	F	18.5
 input1.bam_0	FBtr0070603	72	16	F	20.5
 input1.bam_0	FBtr0070603	72	17	F	24.0
@@ -131,602 +44,112 @@
 input1.bam_0	FBtr0070603	72	20	F	21.0
 input1.bam_0	FBtr0070603	72	21	F	25.0
 input1.bam_0	FBtr0070603	72	22	F	20.7
-input1.bam_0	FBtr0070603	72	23	F	0
 input1.bam_0	FBtr0070603	72	24	F	19.5
 input1.bam_0	FBtr0070603	72	25	F	23.0
 input1.bam_0	FBtr0070603	72	26	F	25.8
 input1.bam_0	FBtr0070603	72	27	F	26.3
-input1.bam_0	FBtr0070603	72	28	F	0
-input1.bam_0	FBtr0070603	72	29	F	0
-input1.bam_0	FBtr0070603	72	30	F	0
-input1.bam_0	FBtr0070603	72	31	F	0
 input1.bam_0	FBtr0070603	72	32	F	20.0
-input1.bam_0	FBtr0070603	72	33	F	0
 input1.bam_0	FBtr0070603	72	34	F	19.3
-input1.bam_0	FBtr0070603	72	35	F	0
-input1.bam_0	FBtr0070603	72	36	F	0
-input1.bam_0	FBtr0070603	72	37	F	0
 input1.bam_0	FBtr0070603	72	38	F	18.0
-input1.bam_0	FBtr0070603	72	39	F	0
-input1.bam_0	FBtr0070603	72	40	F	0
-input1.bam_0	FBtr0070603	72	41	F	0
 input1.bam_0	FBtr0070603	72	42	F	21.0
-input1.bam_0	FBtr0070603	72	43	F	0
-input1.bam_0	FBtr0070603	72	44	F	0
-input1.bam_0	FBtr0070603	72	45	F	0
-input1.bam_0	FBtr0070603	72	46	F	0
-input1.bam_0	FBtr0070603	72	47	F	0
-input1.bam_0	FBtr0070603	72	48	F	0
-input1.bam_0	FBtr0070603	72	49	F	0
-input1.bam_0	FBtr0070603	72	50	F	0
 input1.bam_0	FBtr0070603	72	51	F	18.0
-input1.bam_0	FBtr0070603	72	52	F	0
-input1.bam_0	FBtr0070603	72	53	F	0
-input1.bam_0	FBtr0070603	72	54	F	0
-input1.bam_0	FBtr0070603	72	55	F	0
 input1.bam_0	FBtr0070603	72	56	F	16.0
-input1.bam_0	FBtr0070603	72	57	F	0
-input1.bam_0	FBtr0070603	72	58	F	0
-input1.bam_0	FBtr0070603	72	59	F	0
-input1.bam_0	FBtr0070603	72	60	F	0
-input1.bam_0	FBtr0070603	72	61	F	0
-input1.bam_0	FBtr0070603	72	62	F	0
-input1.bam_0	FBtr0070603	72	63	F	0
-input1.bam_0	FBtr0070603	72	64	F	0
-input1.bam_0	FBtr0070603	72	65	F	0
-input1.bam_0	FBtr0070603	72	66	F	0
-input1.bam_0	FBtr0070603	72	67	F	0
-input1.bam_0	FBtr0070603	72	68	F	0
-input1.bam_0	FBtr0070603	72	69	F	0
-input1.bam_0	FBtr0070603	72	70	F	0
-input1.bam_0	FBtr0070603	72	71	F	0
 input1.bam_0	FBtr0070603	72	72	F	0
 input1.bam_0	FBtr0070604	72	1	F	15.0
-input1.bam_0	FBtr0070604	72	2	F	0
-input1.bam_0	FBtr0070604	72	3	F	0
-input1.bam_0	FBtr0070604	72	4	F	0
-input1.bam_0	FBtr0070604	72	5	F	0
-input1.bam_0	FBtr0070604	72	6	F	0
-input1.bam_0	FBtr0070604	72	7	F	0
-input1.bam_0	FBtr0070604	72	8	F	0
-input1.bam_0	FBtr0070604	72	9	F	0
-input1.bam_0	FBtr0070604	72	10	F	0
-input1.bam_0	FBtr0070604	72	11	F	0
-input1.bam_0	FBtr0070604	72	12	F	0
-input1.bam_0	FBtr0070604	72	13	F	0
-input1.bam_0	FBtr0070604	72	14	F	0
-input1.bam_0	FBtr0070604	72	15	F	0
 input1.bam_0	FBtr0070604	72	18	F	23.0
-input1.bam_0	FBtr0070604	72	19	F	0
-input1.bam_0	FBtr0070604	72	20	F	0
-input1.bam_0	FBtr0070604	72	21	F	0
 input1.bam_0	FBtr0070604	72	22	F	19.0
-input1.bam_0	FBtr0070604	72	23	F	0
-input1.bam_0	FBtr0070604	72	24	F	0
-input1.bam_0	FBtr0070604	72	25	F	0
-input1.bam_0	FBtr0070604	72	26	F	0
-input1.bam_0	FBtr0070604	72	27	F	0
-input1.bam_0	FBtr0070604	72	28	F	0
-input1.bam_0	FBtr0070604	72	29	F	0
 input1.bam_0	FBtr0070604	72	30	F	18.0
 input1.bam_0	FBtr0070604	72	31	F	22.6
 input1.bam_0	FBtr0070604	72	32	F	22.0
-input1.bam_0	FBtr0070604	72	33	F	0
-input1.bam_0	FBtr0070604	72	34	F	0
-input1.bam_0	FBtr0070604	72	35	F	0
-input1.bam_0	FBtr0070604	72	36	F	0
-input1.bam_0	FBtr0070604	72	37	F	0
-input1.bam_0	FBtr0070604	72	38	F	0
-input1.bam_0	FBtr0070604	72	39	F	0
-input1.bam_0	FBtr0070604	72	40	F	0
-input1.bam_0	FBtr0070604	72	41	F	0
-input1.bam_0	FBtr0070604	72	42	F	0
-input1.bam_0	FBtr0070604	72	43	F	0
-input1.bam_0	FBtr0070604	72	44	F	0
-input1.bam_0	FBtr0070604	72	45	F	0
-input1.bam_0	FBtr0070604	72	46	F	0
-input1.bam_0	FBtr0070604	72	47	F	0
-input1.bam_0	FBtr0070604	72	48	F	0
-input1.bam_0	FBtr0070604	72	49	F	0
-input1.bam_0	FBtr0070604	72	50	F	0
-input1.bam_0	FBtr0070604	72	51	F	0
-input1.bam_0	FBtr0070604	72	52	F	0
-input1.bam_0	FBtr0070604	72	53	F	0
 input1.bam_0	FBtr0070604	72	57	F	15.0
-input1.bam_0	FBtr0070604	72	58	F	0
-input1.bam_0	FBtr0070604	72	59	F	0
-input1.bam_0	FBtr0070604	72	60	F	0
-input1.bam_0	FBtr0070604	72	61	F	0
-input1.bam_0	FBtr0070604	72	62	F	0
-input1.bam_0	FBtr0070604	72	63	F	0
-input1.bam_0	FBtr0070604	72	64	F	0
-input1.bam_0	FBtr0070604	72	65	F	0
-input1.bam_0	FBtr0070604	72	66	F	0
-input1.bam_0	FBtr0070604	72	67	F	0
-input1.bam_0	FBtr0070604	72	68	F	0
-input1.bam_0	FBtr0070604	72	69	F	0
-input1.bam_0	FBtr0070604	72	70	F	0
-input1.bam_0	FBtr0070604	72	71	F	0
 input1.bam_0	FBtr0070604	72	72	F	0
 input1.bam_0	FBtr0070911	73	1	F	0
 input1.bam_0	FBtr0070911	73	15	F	21.0
-input1.bam_0	FBtr0070911	73	16	F	0
-input1.bam_0	FBtr0070911	73	17	F	0
-input1.bam_0	FBtr0070911	73	18	F	0
-input1.bam_0	FBtr0070911	73	19	F	0
-input1.bam_0	FBtr0070911	73	20	F	0
-input1.bam_0	FBtr0070911	73	21	F	0
-input1.bam_0	FBtr0070911	73	22	F	0
-input1.bam_0	FBtr0070911	73	23	F	0
-input1.bam_0	FBtr0070911	73	24	F	0
-input1.bam_0	FBtr0070911	73	25	F	0
-input1.bam_0	FBtr0070911	73	26	F	0
-input1.bam_0	FBtr0070911	73	27	F	0
-input1.bam_0	FBtr0070911	73	28	F	0
-input1.bam_0	FBtr0070911	73	29	F	0
-input1.bam_0	FBtr0070911	73	30	F	0
-input1.bam_0	FBtr0070911	73	31	F	0
-input1.bam_0	FBtr0070911	73	32	F	0
-input1.bam_0	FBtr0070911	73	33	F	0
-input1.bam_0	FBtr0070911	73	34	F	0
-input1.bam_0	FBtr0070911	73	35	F	0
 input1.bam_0	FBtr0070911	73	38	F	15.0
-input1.bam_0	FBtr0070911	73	39	F	0
-input1.bam_0	FBtr0070911	73	40	F	0
-input1.bam_0	FBtr0070911	73	41	F	0
-input1.bam_0	FBtr0070911	73	42	F	0
-input1.bam_0	FBtr0070911	73	43	F	0
-input1.bam_0	FBtr0070911	73	44	F	0
-input1.bam_0	FBtr0070911	73	45	F	0
-input1.bam_0	FBtr0070911	73	46	F	0
-input1.bam_0	FBtr0070911	73	47	F	0
-input1.bam_0	FBtr0070911	73	48	F	0
-input1.bam_0	FBtr0070911	73	49	F	0
-input1.bam_0	FBtr0070911	73	50	F	0
-input1.bam_0	FBtr0070911	73	51	F	0
-input1.bam_0	FBtr0070911	73	52	F	0
 input1.bam_0	FBtr0070911	73	73	F	0
 input1.bam_0	FBtr0078490	72	1	F	0
 input1.bam_0	FBtr0078490	72	13	F	16.0
-input1.bam_0	FBtr0078490	72	14	F	0
-input1.bam_0	FBtr0078490	72	15	F	0
-input1.bam_0	FBtr0078490	72	16	F	0
 input1.bam_0	FBtr0078490	72	17	F	16.0
 input1.bam_0	FBtr0078490	72	18	F	15.0
-input1.bam_0	FBtr0078490	72	19	F	0
-input1.bam_0	FBtr0078490	72	20	F	0
-input1.bam_0	FBtr0078490	72	21	F	0
-input1.bam_0	FBtr0078490	72	22	F	0
-input1.bam_0	FBtr0078490	72	23	F	0
-input1.bam_0	FBtr0078490	72	24	F	0
 input1.bam_0	FBtr0078490	72	25	F	15.0
-input1.bam_0	FBtr0078490	72	26	F	0
-input1.bam_0	FBtr0078490	72	27	F	0
 input1.bam_0	FBtr0078490	72	28	F	19.0
-input1.bam_0	FBtr0078490	72	29	F	0
-input1.bam_0	FBtr0078490	72	30	F	0
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-input1.bam_1	FBtr0079596	73	55	F	0
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-input1.bam_1	FBtr0079596	73	57	F	0
-input1.bam_1	FBtr0079596	73	58	F	0
-input1.bam_1	FBtr0079596	73	59	F	0
-input1.bam_1	FBtr0079596	73	60	F	0
-input1.bam_1	FBtr0079596	73	61	F	0
-input1.bam_1	FBtr0079596	73	62	F	0
-input1.bam_1	FBtr0079596	73	63	F	0
-input1.bam_1	FBtr0079596	73	64	F	0
-input1.bam_1	FBtr0079596	73	65	F	0
-input1.bam_1	FBtr0079596	73	66	F	0
-input1.bam_1	FBtr0079596	73	67	F	0
-input1.bam_1	FBtr0079596	73	68	F	0
-input1.bam_1	FBtr0079596	73	69	F	0
-input1.bam_1	FBtr0079596	73	70	F	0
-input1.bam_1	FBtr0079596	73	71	F	0
-input1.bam_1	FBtr0079596	73	72	F	0
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-input1.bam_1	FBtr0079677	72	3	F	0
-input1.bam_1	FBtr0079677	72	4	F	0
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-input1.bam_1	FBtr0079677	72	6	F	0
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-input1.bam_1	FBtr0079677	72	8	F	0
-input1.bam_1	FBtr0079677	72	9	F	0
-input1.bam_1	FBtr0079677	72	10	F	0
-input1.bam_1	FBtr0079677	72	11	F	0
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-input1.bam_1	FBtr0079677	72	13	F	0
-input1.bam_1	FBtr0079677	72	14	F	0
-input1.bam_1	FBtr0079677	72	15	F	0
-input1.bam_1	FBtr0079677	72	16	F	0
-input1.bam_1	FBtr0079677	72	17	F	0
-input1.bam_1	FBtr0079677	72	18	F	0
-input1.bam_1	FBtr0079677	72	19	F	0
-input1.bam_1	FBtr0079677	72	20	F	0
-input1.bam_1	FBtr0079677	72	21	F	0
-input1.bam_1	FBtr0079677	72	22	F	0
-input1.bam_1	FBtr0079677	72	23	F	0
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-input1.bam_1	FBtr0079677	72	54	F	0
-input1.bam_1	FBtr0079677	72	55	F	0
-input1.bam_1	FBtr0079677	72	56	F	0
-input1.bam_1	FBtr0079677	72	57	F	0
-input1.bam_1	FBtr0079677	72	58	F	0
-input1.bam_1	FBtr0079677	72	59	F	0
-input1.bam_1	FBtr0079677	72	60	F	0
-input1.bam_1	FBtr0079677	72	61	F	0
-input1.bam_1	FBtr0079677	72	62	F	0
-input1.bam_1	FBtr0079677	72	63	F	0
-input1.bam_1	FBtr0079677	72	64	F	0
-input1.bam_1	FBtr0079677	72	65	F	0
-input1.bam_1	FBtr0079677	72	66	F	0
-input1.bam_1	FBtr0079677	72	67	F	0
-input1.bam_1	FBtr0079677	72	68	F	0
-input1.bam_1	FBtr0079677	72	69	F	0
-input1.bam_1	FBtr0079677	72	70	F	0
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-input1.bam_1	FBtr0079690	72	2	F	0
-input1.bam_1	FBtr0079690	72	3	F	0
-input1.bam_1	FBtr0079690	72	4	F	0
-input1.bam_1	FBtr0079690	72	5	F	0
-input1.bam_1	FBtr0079690	72	6	F	0
-input1.bam_1	FBtr0079690	72	7	F	0
-input1.bam_1	FBtr0079690	72	8	F	0
-input1.bam_1	FBtr0079690	72	9	F	0
-input1.bam_1	FBtr0079690	72	10	F	0
-input1.bam_1	FBtr0079690	72	11	F	0
-input1.bam_1	FBtr0079690	72	12	F	0
-input1.bam_1	FBtr0079690	72	13	F	0
-input1.bam_1	FBtr0079690	72	14	F	0
-input1.bam_1	FBtr0079690	72	15	F	0
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-input1.bam_1	FBtr0079690	72	23	F	0
-input1.bam_1	FBtr0079690	72	24	F	0
-input1.bam_1	FBtr0079690	72	25	F	0
-input1.bam_1	FBtr0079690	72	26	F	0
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-input1.bam_1	FBtr0079690	72	28	F	0
-input1.bam_1	FBtr0079690	72	29	F	0
-input1.bam_1	FBtr0079690	72	30	F	0
-input1.bam_1	FBtr0079690	72	31	F	0
-input1.bam_1	FBtr0079690	72	32	F	0
 input1.bam_1	FBtr0079690	72	33	F	16.0
-input1.bam_1	FBtr0079690	72	34	F	0
-input1.bam_1	FBtr0079690	72	35	F	0
-input1.bam_1	FBtr0079690	72	36	F	0
-input1.bam_1	FBtr0079690	72	37	F	0
-input1.bam_1	FBtr0079690	72	38	F	0
-input1.bam_1	FBtr0079690	72	39	F	0
-input1.bam_1	FBtr0079690	72	40	F	0
-input1.bam_1	FBtr0079690	72	41	F	0
-input1.bam_1	FBtr0079690	72	42	F	0
-input1.bam_1	FBtr0079690	72	43	F	0
-input1.bam_1	FBtr0079690	72	44	F	0
-input1.bam_1	FBtr0079690	72	45	F	0
-input1.bam_1	FBtr0079690	72	46	F	0
-input1.bam_1	FBtr0079690	72	47	F	0
-input1.bam_1	FBtr0079690	72	48	F	0
-input1.bam_1	FBtr0079690	72	49	F	0
-input1.bam_1	FBtr0079690	72	50	F	0
-input1.bam_1	FBtr0079690	72	51	F	0
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-input1.bam_1	FBtr0079692	73	2	F	0
-input1.bam_1	FBtr0079692	73	3	F	0
-input1.bam_1	FBtr0079692	73	4	F	0
-input1.bam_1	FBtr0079692	73	5	F	0
-input1.bam_1	FBtr0079692	73	6	F	0
-input1.bam_1	FBtr0079692	73	7	F	0
-input1.bam_1	FBtr0079692	73	8	F	0
-input1.bam_1	FBtr0079692	73	9	F	0
-input1.bam_1	FBtr0079692	73	10	F	0
-input1.bam_1	FBtr0079692	73	11	F	0
-input1.bam_1	FBtr0079692	73	12	F	0
-input1.bam_1	FBtr0079692	73	13	F	0
-input1.bam_1	FBtr0079692	73	14	F	0
-input1.bam_1	FBtr0079692	73	15	F	0
-input1.bam_1	FBtr0079692	73	16	F	0
-input1.bam_1	FBtr0079692	73	17	F	0
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-input1.bam_1	FBtr0079692	73	19	F	0
-input1.bam_1	FBtr0079692	73	20	F	0
-input1.bam_1	FBtr0079692	73	21	F	0
-input1.bam_1	FBtr0079692	73	22	F	0
-input1.bam_1	FBtr0079692	73	23	F	0
-input1.bam_1	FBtr0079692	73	24	F	0
 input1.bam_1	FBtr0079692	73	25	F	17.0
-input1.bam_1	FBtr0079692	73	26	F	0
-input1.bam_1	FBtr0079692	73	27	F	0
-input1.bam_1	FBtr0079692	73	28	F	0
-input1.bam_1	FBtr0079692	73	29	F	0
-input1.bam_1	FBtr0079692	73	30	F	0
-input1.bam_1	FBtr0079692	73	31	F	0
 input1.bam_1	FBtr0079692	73	32	F	20.0
-input1.bam_1	FBtr0079692	73	33	F	0
-input1.bam_1	FBtr0079692	73	34	F	0
-input1.bam_1	FBtr0079692	73	35	F	0
-input1.bam_1	FBtr0079692	73	36	F	0
-input1.bam_1	FBtr0079692	73	37	F	0
-input1.bam_1	FBtr0079692	73	38	F	0
-input1.bam_1	FBtr0079692	73	39	F	0
-input1.bam_1	FBtr0079692	73	40	F	0
-input1.bam_1	FBtr0079692	73	41	F	0
-input1.bam_1	FBtr0079692	73	42	F	0
-input1.bam_1	FBtr0079692	73	43	F	0
-input1.bam_1	FBtr0079692	73	44	F	0
-input1.bam_1	FBtr0079692	73	45	F	0
-input1.bam_1	FBtr0079692	73	46	F	0
-input1.bam_1	FBtr0079692	73	47	F	0
-input1.bam_1	FBtr0079692	73	48	F	0
-input1.bam_1	FBtr0079692	73	49	F	0
-input1.bam_1	FBtr0079692	73	50	F	0
-input1.bam_1	FBtr0079692	73	51	F	0
 input1.bam_1	FBtr0079692	73	73	F	0
 input1.bam_1	FBtr0079693	72	1	F	17.2
-input1.bam_1	FBtr0079693	72	2	F	0
-input1.bam_1	FBtr0079693	72	3	F	0
-input1.bam_1	FBtr0079693	72	4	F	0
-input1.bam_1	FBtr0079693	72	5	F	0
-input1.bam_1	FBtr0079693	72	6	F	0
-input1.bam_1	FBtr0079693	72	7	F	0
-input1.bam_1	FBtr0079693	72	8	F	0
-input1.bam_1	FBtr0079693	72	9	F	0
-input1.bam_1	FBtr0079693	72	10	F	0
-input1.bam_1	FBtr0079693	72	11	F	0
-input1.bam_1	FBtr0079693	72	12	F	0
-input1.bam_1	FBtr0079693	72	13	F	0
-input1.bam_1	FBtr0079693	72	14	F	0
-input1.bam_1	FBtr0079693	72	15	F	0
-input1.bam_1	FBtr0079693	72	16	F	0
-input1.bam_1	FBtr0079693	72	17	F	0
-input1.bam_1	FBtr0079693	72	18	F	0
-input1.bam_1	FBtr0079693	72	19	F	0
-input1.bam_1	FBtr0079693	72	20	F	0
-input1.bam_1	FBtr0079693	72	21	F	0
-input1.bam_1	FBtr0079693	72	22	F	0
-input1.bam_1	FBtr0079693	72	23	F	0
-input1.bam_1	FBtr0079693	72	24	F	0
 input1.bam_1	FBtr0079693	72	25	F	23.0
-input1.bam_1	FBtr0079693	72	26	F	0
-input1.bam_1	FBtr0079693	72	27	F	0
-input1.bam_1	FBtr0079693	72	28	F	0
-input1.bam_1	FBtr0079693	72	29	F	0
-input1.bam_1	FBtr0079693	72	30	F	0
-input1.bam_1	FBtr0079693	72	31	F	0
-input1.bam_1	FBtr0079693	72	32	F	0
-input1.bam_1	FBtr0079693	72	33	F	0
-input1.bam_1	FBtr0079693	72	34	F	0
-input1.bam_1	FBtr0079693	72	35	F	0
-input1.bam_1	FBtr0079693	72	36	F	0
-input1.bam_1	FBtr0079693	72	37	F	0
-input1.bam_1	FBtr0079693	72	38	F	0
-input1.bam_1	FBtr0079693	72	39	F	0
-input1.bam_1	FBtr0079693	72	40	F	0
-input1.bam_1	FBtr0079693	72	41	F	0
-input1.bam_1	FBtr0079693	72	42	F	0
-input1.bam_1	FBtr0079693	72	43	F	0
-input1.bam_1	FBtr0079693	72	44	F	0
-input1.bam_1	FBtr0079693	72	45	F	0
-input1.bam_1	FBtr0079693	72	46	F	0
-input1.bam_1	FBtr0079693	72	47	F	0
 input1.bam_1	FBtr0079693	72	72	F	0
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-input1.bam_1	FBtr0079694	72	2	F	0
-input1.bam_1	FBtr0079694	72	3	F	0
-input1.bam_1	FBtr0079694	72	4	F	0
-input1.bam_1	FBtr0079694	72	5	F	0
-input1.bam_1	FBtr0079694	72	6	F	0
-input1.bam_1	FBtr0079694	72	7	F	0
-input1.bam_1	FBtr0079694	72	8	F	0
-input1.bam_1	FBtr0079694	72	9	F	0
-input1.bam_1	FBtr0079694	72	10	F	0
-input1.bam_1	FBtr0079694	72	11	F	0
-input1.bam_1	FBtr0079694	72	12	F	0
-input1.bam_1	FBtr0079694	72	13	F	0
-input1.bam_1	FBtr0079694	72	14	F	0
-input1.bam_1	FBtr0079694	72	15	F	0
-input1.bam_1	FBtr0079694	72	16	F	0
-input1.bam_1	FBtr0079694	72	17	F	0
 input1.bam_1	FBtr0079694	72	18	F	19.0
-input1.bam_1	FBtr0079694	72	19	F	0
-input1.bam_1	FBtr0079694	72	20	F	0
-input1.bam_1	FBtr0079694	72	21	F	0
-input1.bam_1	FBtr0079694	72	22	F	0
-input1.bam_1	FBtr0079694	72	23	F	0
-input1.bam_1	FBtr0079694	72	24	F	0
-input1.bam_1	FBtr0079694	72	25	F	0
-input1.bam_1	FBtr0079694	72	26	F	0
-input1.bam_1	FBtr0079694	72	27	F	0
-input1.bam_1	FBtr0079694	72	28	F	0
-input1.bam_1	FBtr0079694	72	29	F	0
-input1.bam_1	FBtr0079694	72	30	F	0
-input1.bam_1	FBtr0079694	72	31	F	0
-input1.bam_1	FBtr0079694	72	32	F	0
-input1.bam_1	FBtr0079694	72	33	F	0
-input1.bam_1	FBtr0079694	72	34	F	0
-input1.bam_1	FBtr0079694	72	35	F	0
-input1.bam_1	FBtr0079694	72	36	F	0
 input1.bam_1	FBtr0079694	72	52	F	17.0
-input1.bam_1	FBtr0079694	72	53	F	0
-input1.bam_1	FBtr0079694	72	54	F	0
-input1.bam_1	FBtr0079694	72	55	F	0
-input1.bam_1	FBtr0079694	72	56	F	0
-input1.bam_1	FBtr0079694	72	57	F	0
-input1.bam_1	FBtr0079694	72	58	F	0
-input1.bam_1	FBtr0079694	72	59	F	0
-input1.bam_1	FBtr0079694	72	60	F	0
-input1.bam_1	FBtr0079694	72	61	F	0
-input1.bam_1	FBtr0079694	72	62	F	0
-input1.bam_1	FBtr0079694	72	63	F	0
-input1.bam_1	FBtr0079694	72	64	F	0
-input1.bam_1	FBtr0079694	72	65	F	0
-input1.bam_1	FBtr0079694	72	66	F	0
-input1.bam_1	FBtr0079694	72	67	F	0
-input1.bam_1	FBtr0079694	72	68	F	0
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-input1.bam_1	FBtr0079702	72	2	F	0
-input1.bam_1	FBtr0079702	72	3	F	0
-input1.bam_1	FBtr0079702	72	4	F	0
-input1.bam_1	FBtr0079702	72	5	F	0
-input1.bam_1	FBtr0079702	72	6	F	0
-input1.bam_1	FBtr0079702	72	7	F	0
-input1.bam_1	FBtr0079702	72	8	F	0
-input1.bam_1	FBtr0079702	72	9	F	0
-input1.bam_1	FBtr0079702	72	10	F	0
-input1.bam_1	FBtr0079702	72	11	F	0
-input1.bam_1	FBtr0079702	72	12	F	0
-input1.bam_1	FBtr0079702	72	13	F	0
-input1.bam_1	FBtr0079702	72	14	F	0
-input1.bam_1	FBtr0079702	72	15	F	0
 input1.bam_1	FBtr0079702	72	19	F	18.0
-input1.bam_1	FBtr0079702	72	20	F	0
-input1.bam_1	FBtr0079702	72	21	F	0
-input1.bam_1	FBtr0079702	72	22	F	0
-input1.bam_1	FBtr0079702	72	23	F	0
-input1.bam_1	FBtr0079702	72	24	F	0
-input1.bam_1	FBtr0079702	72	25	F	0
-input1.bam_1	FBtr0079702	72	26	F	0
-input1.bam_1	FBtr0079702	72	27	F	0
-input1.bam_1	FBtr0079702	72	28	F	0
-input1.bam_1	FBtr0079702	72	29	F	0
-input1.bam_1	FBtr0079702	72	30	F	0
-input1.bam_1	FBtr0079702	72	31	F	0
-input1.bam_1	FBtr0079702	72	32	F	0
-input1.bam_1	FBtr0079702	72	33	F	0
-input1.bam_1	FBtr0079702	72	34	F	0
-input1.bam_1	FBtr0079702	72	35	F	0
-input1.bam_1	FBtr0079702	72	36	F	0
 input1.bam_1	FBtr0079702	72	56	F	15.0
-input1.bam_1	FBtr0079702	72	57	F	0
-input1.bam_1	FBtr0079702	72	58	F	0
-input1.bam_1	FBtr0079702	72	59	F	0
-input1.bam_1	FBtr0079702	72	60	F	0
-input1.bam_1	FBtr0079702	72	61	F	0
-input1.bam_1	FBtr0079702	72	62	F	0
-input1.bam_1	FBtr0079702	72	63	F	0
-input1.bam_1	FBtr0079702	72	64	F	0
-input1.bam_1	FBtr0079702	72	65	F	0
-input1.bam_1	FBtr0079702	72	66	F	0
-input1.bam_1	FBtr0079702	72	67	F	0
-input1.bam_1	FBtr0079702	72	68	F	0
-input1.bam_1	FBtr0079702	72	69	F	0
-input1.bam_1	FBtr0079702	72	70	F	0
 input1.bam_1	FBtr0079702	72	72	F	0
 input1.bam_1	FBtr0079728	72	1	F	16.0
-input1.bam_1	FBtr0079728	72	2	F	0
-input1.bam_1	FBtr0079728	72	3	F	0
-input1.bam_1	FBtr0079728	72	4	F	0
-input1.bam_1	FBtr0079728	72	5	F	0
-input1.bam_1	FBtr0079728	72	6	F	0
-input1.bam_1	FBtr0079728	72	7	F	0
 input1.bam_1	FBtr0079728	72	8	F	20.0
-input1.bam_1	FBtr0079728	72	9	F	0
-input1.bam_1	FBtr0079728	72	10	F	0
-input1.bam_1	FBtr0079728	72	11	F	0
-input1.bam_1	FBtr0079728	72	12	F	0
-input1.bam_1	FBtr0079728	72	13	F	0
-input1.bam_1	FBtr0079728	72	14	F	0
-input1.bam_1	FBtr0079728	72	15	F	0
-input1.bam_1	FBtr0079728	72	16	F	0
-input1.bam_1	FBtr0079728	72	17	F	0
-input1.bam_1	FBtr0079728	72	18	F	0
 input1.bam_1	FBtr0079728	72	19	F	24.0
-input1.bam_1	FBtr0079728	72	20	F	0
-input1.bam_1	FBtr0079728	72	21	F	0
-input1.bam_1	FBtr0079728	72	22	F	0
-input1.bam_1	FBtr0079728	72	23	F	0
-input1.bam_1	FBtr0079728	72	24	F	0
-input1.bam_1	FBtr0079728	72	25	F	0
-input1.bam_1	FBtr0079728	72	26	F	0
-input1.bam_1	FBtr0079728	72	27	F	0
-input1.bam_1	FBtr0079728	72	28	F	0
-input1.bam_1	FBtr0079728	72	29	F	0
-input1.bam_1	FBtr0079728	72	30	F	0
-input1.bam_1	FBtr0079728	72	31	F	0
-input1.bam_1	FBtr0079728	72	32	F	0
 input1.bam_1	FBtr0079728	72	33	F	15.7
-input1.bam_1	FBtr0079728	72	34	F	0
-input1.bam_1	FBtr0079728	72	35	F	0
-input1.bam_1	FBtr0079728	72	36	F	0
-input1.bam_1	FBtr0079728	72	37	F	0
-input1.bam_1	FBtr0079728	72	38	F	0
-input1.bam_1	FBtr0079728	72	39	F	0
-input1.bam_1	FBtr0079728	72	40	F	0
-input1.bam_1	FBtr0079728	72	41	F	0
-input1.bam_1	FBtr0079728	72	42	F	0
-input1.bam_1	FBtr0079728	72	43	F	0
-input1.bam_1	FBtr0079728	72	44	F	0
-input1.bam_1	FBtr0079728	72	45	F	0
-input1.bam_1	FBtr0079728	72	46	F	0
-input1.bam_1	FBtr0079728	72	47	F	0
-input1.bam_1	FBtr0079728	72	48	F	0
-input1.bam_1	FBtr0079728	72	49	F	0
 input1.bam_1	FBtr0079728	72	56	F	15.0
-input1.bam_1	FBtr0079728	72	57	F	0
-input1.bam_1	FBtr0079728	72	58	F	0
-input1.bam_1	FBtr0079728	72	59	F	0
-input1.bam_1	FBtr0079728	72	60	F	0
-input1.bam_1	FBtr0079728	72	61	F	0
-input1.bam_1	FBtr0079728	72	62	F	0
-input1.bam_1	FBtr0079728	72	63	F	0
-input1.bam_1	FBtr0079728	72	64	F	0
-input1.bam_1	FBtr0079728	72	65	F	0
-input1.bam_1	FBtr0079728	72	66	F	0
-input1.bam_1	FBtr0079728	72	67	F	0
-input1.bam_1	FBtr0079728	72	68	F	0
-input1.bam_1	FBtr0079728	72	69	F	0
-input1.bam_1	FBtr0079728	72	70	F	0
 input1.bam_1	FBtr0079728	72	72	F	0
 input1.bam_1	FBtr0079729	72	1	F	15.0
-input1.bam_1	FBtr0079729	72	2	F	0
-input1.bam_1	FBtr0079729	72	3	F	0
-input1.bam_1	FBtr0079729	72	4	F	0
-input1.bam_1	FBtr0079729	72	5	F	0
-input1.bam_1	FBtr0079729	72	6	F	0
-input1.bam_1	FBtr0079729	72	7	F	0
-input1.bam_1	FBtr0079729	72	8	F	0
-input1.bam_1	FBtr0079729	72	9	F	0
-input1.bam_1	FBtr0079729	72	10	F	0
-input1.bam_1	FBtr0079729	72	11	F	0
-input1.bam_1	FBtr0079729	72	12	F	0
 input1.bam_1	FBtr0079729	72	13	F	22.0
-input1.bam_1	FBtr0079729	72	14	F	0
-input1.bam_1	FBtr0079729	72	15	F	0
-input1.bam_1	FBtr0079729	72	16	F	0
-input1.bam_1	FBtr0079729	72	17	F	0
-input1.bam_1	FBtr0079729	72	18	F	0
-input1.bam_1	FBtr0079729	72	19	F	0
-input1.bam_1	FBtr0079729	72	20	F	0
-input1.bam_1	FBtr0079729	72	21	F	0
-input1.bam_1	FBtr0079729	72	22	F	0
-input1.bam_1	FBtr0079729	72	23	F	0
-input1.bam_1	FBtr0079729	72	24	F	0
-input1.bam_1	FBtr0079729	72	25	F	0
-input1.bam_1	FBtr0079729	72	26	F	0
-input1.bam_1	FBtr0079729	72	27	F	0
-input1.bam_1	FBtr0079729	72	28	F	0
-input1.bam_1	FBtr0079729	72	29	F	0
-input1.bam_1	FBtr0079729	72	30	F	0
-input1.bam_1	FBtr0079729	72	31	F	0
-input1.bam_1	FBtr0079729	72	32	F	0
-input1.bam_1	FBtr0079729	72	33	F	0
-input1.bam_1	FBtr0079729	72	34	F	0
 input1.bam_1	FBtr0079729	72	52	F	18.0
-input1.bam_1	FBtr0079729	72	53	F	0
-input1.bam_1	FBtr0079729	72	54	F	0
-input1.bam_1	FBtr0079729	72	55	F	0
-input1.bam_1	FBtr0079729	72	56	F	0
 input1.bam_1	FBtr0079729	72	57	F	16.0
-input1.bam_1	FBtr0079729	72	58	F	0
-input1.bam_1	FBtr0079729	72	59	F	0
-input1.bam_1	FBtr0079729	72	60	F	0
-input1.bam_1	FBtr0079729	72	61	F	0
-input1.bam_1	FBtr0079729	72	62	F	0
-input1.bam_1	FBtr0079729	72	63	F	0
-input1.bam_1	FBtr0079729	72	64	F	0
-input1.bam_1	FBtr0079729	72	65	F	0
-input1.bam_1	FBtr0079729	72	66	F	0
-input1.bam_1	FBtr0079729	72	67	F	0
-input1.bam_1	FBtr0079729	72	68	F	0
-input1.bam_1	FBtr0079729	72	69	F	0
-input1.bam_1	FBtr0079729	72	70	F	0
-input1.bam_1	FBtr0079729	72	71	F	0
 input1.bam_1	FBtr0079729	72	72	F	0
 input1.bam_1	FBtr0079752	72	1	F	19.5
-input1.bam_1	FBtr0079752	72	2	F	0
-input1.bam_1	FBtr0079752	72	3	F	0
-input1.bam_1	FBtr0079752	72	4	F	0
-input1.bam_1	FBtr0079752	72	5	F	0
-input1.bam_1	FBtr0079752	72	6	F	0
 input1.bam_1	FBtr0079752	72	7	F	20.0
-input1.bam_1	FBtr0079752	72	8	F	0
-input1.bam_1	FBtr0079752	72	9	F	0
-input1.bam_1	FBtr0079752	72	10	F	0
-input1.bam_1	FBtr0079752	72	11	F	0
 input1.bam_1	FBtr0079752	72	12	F	16.0
-input1.bam_1	FBtr0079752	72	13	F	0
-input1.bam_1	FBtr0079752	72	14	F	0
-input1.bam_1	FBtr0079752	72	15	F	0
-input1.bam_1	FBtr0079752	72	16	F	0
-input1.bam_1	FBtr0079752	72	17	F	0
-input1.bam_1	FBtr0079752	72	18	F	0
-input1.bam_1	FBtr0079752	72	19	F	0
-input1.bam_1	FBtr0079752	72	20	F	0
-input1.bam_1	FBtr0079752	72	21	F	0
-input1.bam_1	FBtr0079752	72	22	F	0
-input1.bam_1	FBtr0079752	72	23	F	0
-input1.bam_1	FBtr0079752	72	24	F	0
-input1.bam_1	FBtr0079752	72	25	F	0
-input1.bam_1	FBtr0079752	72	26	F	0
-input1.bam_1	FBtr0079752	72	27	F	0
 input1.bam_1	FBtr0079752	72	33	F	16.0
-input1.bam_1	FBtr0079752	72	34	F	0
-input1.bam_1	FBtr0079752	72	35	F	0
-input1.bam_1	FBtr0079752	72	36	F	0
-input1.bam_1	FBtr0079752	72	37	F	0
-input1.bam_1	FBtr0079752	72	38	F	0
-input1.bam_1	FBtr0079752	72	39	F	0
-input1.bam_1	FBtr0079752	72	40	F	0
-input1.bam_1	FBtr0079752	72	41	F	0
-input1.bam_1	FBtr0079752	72	42	F	0
-input1.bam_1	FBtr0079752	72	43	F	0
-input1.bam_1	FBtr0079752	72	44	F	0
-input1.bam_1	FBtr0079752	72	45	F	0
-input1.bam_1	FBtr0079752	72	46	F	0
-input1.bam_1	FBtr0079752	72	47	F	0
-input1.bam_1	FBtr0079752	72	48	F	0
-input1.bam_1	FBtr0079752	72	49	F	0
 input1.bam_1	FBtr0079752	72	52	F	19.5
-input1.bam_1	FBtr0079752	72	53	F	0
-input1.bam_1	FBtr0079752	72	54	F	0
-input1.bam_1	FBtr0079752	72	55	F	0
-input1.bam_1	FBtr0079752	72	56	F	0
-input1.bam_1	FBtr0079752	72	57	F	0
-input1.bam_1	FBtr0079752	72	58	F	0
-input1.bam_1	FBtr0079752	72	59	F	0
-input1.bam_1	FBtr0079752	72	60	F	0
-input1.bam_1	FBtr0079752	72	61	F	0
-input1.bam_1	FBtr0079752	72	62	F	0
-input1.bam_1	FBtr0079752	72	63	F	0
-input1.bam_1	FBtr0079752	72	64	F	0
-input1.bam_1	FBtr0079752	72	65	F	0
-input1.bam_1	FBtr0079752	72	66	F	0
-input1.bam_1	FBtr0079752	72	67	F	0
-input1.bam_1	FBtr0079752	72	68	F	0
-input1.bam_1	FBtr0079752	72	69	F	0
-input1.bam_1	FBtr0079752	72	70	F	0
-input1.bam_1	FBtr0079752	72	71	F	0
 input1.bam_1	FBtr0079752	72	72	F	0
 input1.bam_1	FBtr0079820	74	1	F	0
 input1.bam_1	FBtr0079820	74	45	F	20.0
 input1.bam_1	FBtr0079820	74	46	F	17.0
-input1.bam_1	FBtr0079820	74	47	F	0
 input1.bam_1	FBtr0079820	74	48	F	18.0
 input1.bam_1	FBtr0079820	74	49	F	24.0
-input1.bam_1	FBtr0079820	74	50	F	0
 input1.bam_1	FBtr0079820	74	51	F	20.0
-input1.bam_1	FBtr0079820	74	52	F	0
-input1.bam_1	FBtr0079820	74	53	F	0
 input1.bam_1	FBtr0079820	74	54	F	17.0
 input1.bam_1	FBtr0079820	74	55	F	18.0
 input1.bam_1	FBtr0079820	74	56	F	18.5
-input1.bam_1	FBtr0079820	74	57	F	0
-input1.bam_1	FBtr0079820	74	58	F	0
-input1.bam_1	FBtr0079820	74	59	F	0
-input1.bam_1	FBtr0079820	74	60	F	0
-input1.bam_1	FBtr0079820	74	61	F	0
-input1.bam_1	FBtr0079820	74	62	F	0
-input1.bam_1	FBtr0079820	74	63	F	0
-input1.bam_1	FBtr0079820	74	64	F	0
-input1.bam_1	FBtr0079820	74	65	F	0
-input1.bam_1	FBtr0079820	74	66	F	0
-input1.bam_1	FBtr0079820	74	67	F	0
-input1.bam_1	FBtr0079820	74	68	F	0
-input1.bam_1	FBtr0079820	74	69	F	0
-input1.bam_1	FBtr0079820	74	70	F	0
-input1.bam_1	FBtr0079820	74	71	F	0
-input1.bam_1	FBtr0079820	74	72	F	0
-input1.bam_1	FBtr0079820	74	73	F	0
 input1.bam_1	FBtr0079820	74	74	F	0
 input1.bam_1	FBtr0080609	72	1	F	18.8
-input1.bam_1	FBtr0080609	72	2	F	0
 input1.bam_1	FBtr0080609	72	3	F	21.0
 input1.bam_1	FBtr0080609	72	4	F	20.0
 input1.bam_1	FBtr0080609	72	5	F	19.0
-input1.bam_1	FBtr0080609	72	6	F	0
 input1.bam_1	FBtr0080609	72	7	F	17.1
 input1.bam_1	FBtr0080609	72	8	F	16.0
 input1.bam_1	FBtr0080609	72	9	F	15.0
-input1.bam_1	FBtr0080609	72	10	F	0
-input1.bam_1	FBtr0080609	72	11	F	0
 input1.bam_1	FBtr0080609	72	12	F	23.0
-input1.bam_1	FBtr0080609	72	13	F	0
-input1.bam_1	FBtr0080609	72	14	F	0
 input1.bam_1	FBtr0080609	72	15	F	19.0
 input1.bam_1	FBtr0080609	72	16	F	23.0
 input1.bam_1	FBtr0080609	72	17	F	20.5
-input1.bam_1	FBtr0080609	72	18	F	0
 input1.bam_1	FBtr0080609	72	19	F	26.0
 input1.bam_1	FBtr0080609	72	20	F	25.0
-input1.bam_1	FBtr0080609	72	21	F	0
-input1.bam_1	FBtr0080609	72	22	F	0
-input1.bam_1	FBtr0080609	72	23	F	0
-input1.bam_1	FBtr0080609	72	24	F	0
-input1.bam_1	FBtr0080609	72	25	F	0
-input1.bam_1	FBtr0080609	72	26	F	0
-input1.bam_1	FBtr0080609	72	27	F	0
-input1.bam_1	FBtr0080609	72	28	F	0
-input1.bam_1	FBtr0080609	72	29	F	0
-input1.bam_1	FBtr0080609	72	30	F	0
-input1.bam_1	FBtr0080609	72	31	F	0
-input1.bam_1	FBtr0080609	72	32	F	0
-input1.bam_1	FBtr0080609	72	33	F	0
-input1.bam_1	FBtr0080609	72	34	F	0
-input1.bam_1	FBtr0080609	72	35	F	0
-input1.bam_1	FBtr0080609	72	36	F	0
-input1.bam_1	FBtr0080609	72	37	F	0
-input1.bam_1	FBtr0080609	72	38	F	0
-input1.bam_1	FBtr0080609	72	39	F	0
-input1.bam_1	FBtr0080609	72	40	F	0
-input1.bam_1	FBtr0080609	72	41	F	0
 input1.bam_1	FBtr0080609	72	42	F	21.0
-input1.bam_1	FBtr0080609	72	43	F	0
-input1.bam_1	FBtr0080609	72	44	F	0
-input1.bam_1	FBtr0080609	72	45	F	0
-input1.bam_1	FBtr0080609	72	46	F	0
-input1.bam_1	FBtr0080609	72	47	F	0
-input1.bam_1	FBtr0080609	72	48	F	0
-input1.bam_1	FBtr0080609	72	49	F	0
-input1.bam_1	FBtr0080609	72	50	F	0
 input1.bam_1	FBtr0080609	72	51	F	18.0
 input1.bam_1	FBtr0080609	72	52	F	15.0
-input1.bam_1	FBtr0080609	72	53	F	0
-input1.bam_1	FBtr0080609	72	54	F	0
-input1.bam_1	FBtr0080609	72	55	F	0
-input1.bam_1	FBtr0080609	72	56	F	0
-input1.bam_1	FBtr0080609	72	57	F	0
-input1.bam_1	FBtr0080609	72	58	F	0
-input1.bam_1	FBtr0080609	72	59	F	0
-input1.bam_1	FBtr0080609	72	60	F	0
-input1.bam_1	FBtr0080609	72	61	F	0
-input1.bam_1	FBtr0080609	72	62	F	0
-input1.bam_1	FBtr0080609	72	63	F	0
-input1.bam_1	FBtr0080609	72	64	F	0
-input1.bam_1	FBtr0080609	72	65	F	0
-input1.bam_1	FBtr0080609	72	66	F	0
-input1.bam_1	FBtr0080609	72	67	F	0
-input1.bam_1	FBtr0080609	72	68	F	0
 input1.bam_1	FBtr0080609	72	72	F	0
 input1.bam_1	FBtr0080644	72	1	F	27.0
-input1.bam_1	FBtr0080644	72	2	F	0
-input1.bam_1	FBtr0080644	72	3	F	0
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-input1.bam_1	FBtr0080644	72	5	F	0
-input1.bam_1	FBtr0080644	72	6	F	0
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-input1.bam_1	FBtr0080644	72	8	F	0
-input1.bam_1	FBtr0080644	72	9	F	0
-input1.bam_1	FBtr0080644	72	10	F	0
-input1.bam_1	FBtr0080644	72	11	F	0
 input1.bam_1	FBtr0080644	72	12	F	16.0
-input1.bam_1	FBtr0080644	72	13	F	0
-input1.bam_1	FBtr0080644	72	14	F	0
-input1.bam_1	FBtr0080644	72	15	F	0
-input1.bam_1	FBtr0080644	72	16	F	0
-input1.bam_1	FBtr0080644	72	17	F	0
-input1.bam_1	FBtr0080644	72	18	F	0
-input1.bam_1	FBtr0080644	72	19	F	0
-input1.bam_1	FBtr0080644	72	20	F	0
-input1.bam_1	FBtr0080644	72	21	F	0
-input1.bam_1	FBtr0080644	72	22	F	0
-input1.bam_1	FBtr0080644	72	23	F	0
-input1.bam_1	FBtr0080644	72	24	F	0
-input1.bam_1	FBtr0080644	72	25	F	0
-input1.bam_1	FBtr0080644	72	26	F	0
-input1.bam_1	FBtr0080644	72	27	F	0
 input1.bam_1	FBtr0080644	72	72	F	0
 input1.bam_1	FBtr0080646	72	1	F	16.0
-input1.bam_1	FBtr0080646	72	2	F	0
-input1.bam_1	FBtr0080646	72	3	F	0
-input1.bam_1	FBtr0080646	72	4	F	0
-input1.bam_1	FBtr0080646	72	5	F	0
 input1.bam_1	FBtr0080646	72	6	F	22.0
 input1.bam_1	FBtr0080646	72	7	F	21.0
-input1.bam_1	FBtr0080646	72	8	F	0
-input1.bam_1	FBtr0080646	72	9	F	0
-input1.bam_1	FBtr0080646	72	10	F	0
-input1.bam_1	FBtr0080646	72	11	F	0
-input1.bam_1	FBtr0080646	72	12	F	0
-input1.bam_1	FBtr0080646	72	13	F	0
-input1.bam_1	FBtr0080646	72	14	F	0
-input1.bam_1	FBtr0080646	72	15	F	0
-input1.bam_1	FBtr0080646	72	16	F	0
-input1.bam_1	FBtr0080646	72	17	F	0
-input1.bam_1	FBtr0080646	72	18	F	0
-input1.bam_1	FBtr0080646	72	19	F	0
-input1.bam_1	FBtr0080646	72	20	F	0
-input1.bam_1	FBtr0080646	72	21	F	0
-input1.bam_1	FBtr0080646	72	22	F	0
-input1.bam_1	FBtr0080646	72	23	F	0
-input1.bam_1	FBtr0080646	72	24	F	0
-input1.bam_1	FBtr0080646	72	25	F	0
-input1.bam_1	FBtr0080646	72	26	F	0
-input1.bam_1	FBtr0080646	72	27	F	0
 input1.bam_1	FBtr0080646	72	72	F	0
 input1.bam_1	FBtr0080647	72	1	F	16.3
-input1.bam_1	FBtr0080647	72	2	F	0
 input1.bam_1	FBtr0080647	72	3	F	16.0
-input1.bam_1	FBtr0080647	72	4	F	0
-input1.bam_1	FBtr0080647	72	5	F	0
 input1.bam_1	FBtr0080647	72	6	F	19.0
-input1.bam_1	FBtr0080647	72	7	F	0
 input1.bam_1	FBtr0080647	72	8	F	20.0
-input1.bam_1	FBtr0080647	72	9	F	0
-input1.bam_1	FBtr0080647	72	10	F	0
 input1.bam_1	FBtr0080647	72	11	F	17.0
 input1.bam_1	FBtr0080647	72	12	F	16.0
-input1.bam_1	FBtr0080647	72	13	F	0
-input1.bam_1	FBtr0080647	72	14	F	0
-input1.bam_1	FBtr0080647	72	15	F	0
-input1.bam_1	FBtr0080647	72	16	F	0
-input1.bam_1	FBtr0080647	72	17	F	0
-input1.bam_1	FBtr0080647	72	18	F	0
-input1.bam_1	FBtr0080647	72	19	F	0
-input1.bam_1	FBtr0080647	72	20	F	0
-input1.bam_1	FBtr0080647	72	21	F	0
-input1.bam_1	FBtr0080647	72	22	F	0
-input1.bam_1	FBtr0080647	72	23	F	0
-input1.bam_1	FBtr0080647	72	24	F	0
-input1.bam_1	FBtr0080647	72	25	F	0
-input1.bam_1	FBtr0080647	72	26	F	0
-input1.bam_1	FBtr0080647	72	27	F	0
 input1.bam_1	FBtr0080647	72	72	F	0
 input1.bam_1	FBtr0080660	72	1	F	0
 input1.bam_1	FBtr0080660	72	4	F	24.0
-input1.bam_1	FBtr0080660	72	5	F	0
-input1.bam_1	FBtr0080660	72	6	F	0
 input1.bam_1	FBtr0080660	72	7	F	19.3
-input1.bam_1	FBtr0080660	72	8	F	0
-input1.bam_1	FBtr0080660	72	9	F	0
-input1.bam_1	FBtr0080660	72	10	F	0
-input1.bam_1	FBtr0080660	72	11	F	0
-input1.bam_1	FBtr0080660	72	12	F	0
-input1.bam_1	FBtr0080660	72	13	F	0
-input1.bam_1	FBtr0080660	72	14	F	0
-input1.bam_1	FBtr0080660	72	15	F	0
-input1.bam_1	FBtr0080660	72	16	F	0
-input1.bam_1	FBtr0080660	72	17	F	0
-input1.bam_1	FBtr0080660	72	18	F	0
-input1.bam_1	FBtr0080660	72	19	F	0
-input1.bam_1	FBtr0080660	72	20	F	0
-input1.bam_1	FBtr0080660	72	21	F	0
-input1.bam_1	FBtr0080660	72	22	F	0
-input1.bam_1	FBtr0080660	72	23	F	0
-input1.bam_1	FBtr0080660	72	24	F	0
-input1.bam_1	FBtr0080660	72	25	F	0
-input1.bam_1	FBtr0080660	72	26	F	0
-input1.bam_1	FBtr0080660	72	27	F	0
 input1.bam_1	FBtr0080660	72	72	F	0
 input1.bam_1	FBtr0080663	71	1	F	18.8
-input1.bam_1	FBtr0080663	71	2	F	0
 input1.bam_1	FBtr0080663	71	3	F	23.7
 input1.bam_1	FBtr0080663	71	4	F	23.3
-input1.bam_1	FBtr0080663	71	5	F	0
-input1.bam_1	FBtr0080663	71	6	F	0
 input1.bam_1	FBtr0080663	71	7	F	16.0
 input1.bam_1	FBtr0080663	71	8	F	19.3
-input1.bam_1	FBtr0080663	71	9	F	0
-input1.bam_1	FBtr0080663	71	10	F	0
-input1.bam_1	FBtr0080663	71	11	F	0
 input1.bam_1	FBtr0080663	71	12	F	16.0
-input1.bam_1	FBtr0080663	71	13	F	0
 input1.bam_1	FBtr0080663	71	14	F	19.0
 input1.bam_1	FBtr0080663	71	15	F	17.0
 input1.bam_1	FBtr0080663	71	16	F	15.7
 input1.bam_1	FBtr0080663	71	17	F	15.6
-input1.bam_1	FBtr0080663	71	18	F	0
-input1.bam_1	FBtr0080663	71	19	F	0
-input1.bam_1	FBtr0080663	71	20	F	0
-input1.bam_1	FBtr0080663	71	21	F	0
-input1.bam_1	FBtr0080663	71	22	F	0
-input1.bam_1	FBtr0080663	71	23	F	0
-input1.bam_1	FBtr0080663	71	24	F	0
-input1.bam_1	FBtr0080663	71	25	F	0
 input1.bam_1	FBtr0080663	71	26	F	18.0
-input1.bam_1	FBtr0080663	71	27	F	0
-input1.bam_1	FBtr0080663	71	28	F	0
-input1.bam_1	FBtr0080663	71	29	F	0
-input1.bam_1	FBtr0080663	71	30	F	0
-input1.bam_1	FBtr0080663	71	31	F	0
 input1.bam_1	FBtr0080663	71	32	F	15.5
-input1.bam_1	FBtr0080663	71	33	F	0
-input1.bam_1	FBtr0080663	71	34	F	0
-input1.bam_1	FBtr0080663	71	35	F	0
-input1.bam_1	FBtr0080663	71	36	F	0
-input1.bam_1	FBtr0080663	71	37	F	0
-input1.bam_1	FBtr0080663	71	38	F	0
-input1.bam_1	FBtr0080663	71	39	F	0
-input1.bam_1	FBtr0080663	71	40	F	0
-input1.bam_1	FBtr0080663	71	41	F	0
-input1.bam_1	FBtr0080663	71	42	F	0
-input1.bam_1	FBtr0080663	71	43	F	0
-input1.bam_1	FBtr0080663	71	44	F	0
-input1.bam_1	FBtr0080663	71	45	F	0
-input1.bam_1	FBtr0080663	71	46	F	0
-input1.bam_1	FBtr0080663	71	47	F	0
 input1.bam_1	FBtr0080663	71	50	F	17.0
 input1.bam_1	FBtr0080663	71	51	F	15.6
-input1.bam_1	FBtr0080663	71	52	F	0
-input1.bam_1	FBtr0080663	71	53	F	0
-input1.bam_1	FBtr0080663	71	54	F	0
-input1.bam_1	FBtr0080663	71	55	F	0
-input1.bam_1	FBtr0080663	71	56	F	0
-input1.bam_1	FBtr0080663	71	57	F	0
-input1.bam_1	FBtr0080663	71	58	F	0
-input1.bam_1	FBtr0080663	71	59	F	0
-input1.bam_1	FBtr0080663	71	60	F	0
-input1.bam_1	FBtr0080663	71	61	F	0
-input1.bam_1	FBtr0080663	71	62	F	0
-input1.bam_1	FBtr0080663	71	63	F	0
-input1.bam_1	FBtr0080663	71	64	F	0
-input1.bam_1	FBtr0080663	71	65	F	0
-input1.bam_1	FBtr0080663	71	66	F	0
-input1.bam_1	FBtr0080663	71	67	F	0
-input1.bam_1	FBtr0080663	71	68	F	0
-input1.bam_1	FBtr0080663	71	69	F	0
-input1.bam_1	FBtr0080663	71	70	F	0
 input1.bam_1	FBtr0080663	71	71	F	0
 input1.bam_1	FBtr0080664	71	1	F	19.5
-input1.bam_1	FBtr0080664	71	2	F	0
 input1.bam_1	FBtr0080664	71	3	F	23.8
 input1.bam_1	FBtr0080664	71	4	F	23.5
-input1.bam_1	FBtr0080664	71	5	F	0
 input1.bam_1	FBtr0080664	71	6	F	23.0
 input1.bam_1	FBtr0080664	71	7	F	21.0
 input1.bam_1	FBtr0080664	71	8	F	20.5
 input1.bam_1	FBtr0080664	71	9	F	20.0
-input1.bam_1	FBtr0080664	71	10	F	0
 input1.bam_1	FBtr0080664	71	11	F	16.7
 input1.bam_1	FBtr0080664	71	12	F	18.0
 input1.bam_1	FBtr0080664	71	13	F	20.0
 input1.bam_1	FBtr0080664	71	14	F	18.3
-input1.bam_1	FBtr0080664	71	15	F	0
 input1.bam_1	FBtr0080664	71	16	F	15.0
 input1.bam_1	FBtr0080664	71	17	F	15.8
 input1.bam_1	FBtr0080664	71	18	F	15.0
-input1.bam_1	FBtr0080664	71	19	F	0
-input1.bam_1	FBtr0080664	71	20	F	0
 input1.bam_1	FBtr0080664	71	21	F	15.0
-input1.bam_1	FBtr0080664	71	22	F	0
-input1.bam_1	FBtr0080664	71	23	F	0
-input1.bam_1	FBtr0080664	71	24	F	0
-input1.bam_1	FBtr0080664	71	25	F	0
-input1.bam_1	FBtr0080664	71	26	F	0
-input1.bam_1	FBtr0080664	71	27	F	0
 input1.bam_1	FBtr0080664	71	28	F	16.0
-input1.bam_1	FBtr0080664	71	29	F	0
-input1.bam_1	FBtr0080664	71	30	F	0
-input1.bam_1	FBtr0080664	71	31	F	0
 input1.bam_1	FBtr0080664	71	32	F	15.0
 input1.bam_1	FBtr0080664	71	33	F	20.0
 input1.bam_1	FBtr0080664	71	34	F	16.0
@@ -3170,36 +592,8 @@
 input1.bam_1	FBtr0080664	71	36	F	21.0
 input1.bam_1	FBtr0080664	71	37	F	18.0
 input1.bam_1	FBtr0080664	71	38	F	15.0
-input1.bam_1	FBtr0080664	71	39	F	0
-input1.bam_1	FBtr0080664	71	40	F	0
-input1.bam_1	FBtr0080664	71	41	F	0
-input1.bam_1	FBtr0080664	71	42	F	0
-input1.bam_1	FBtr0080664	71	43	F	0
-input1.bam_1	FBtr0080664	71	44	F	0
-input1.bam_1	FBtr0080664	71	45	F	0
-input1.bam_1	FBtr0080664	71	46	F	0
-input1.bam_1	FBtr0080664	71	47	F	0
-input1.bam_1	FBtr0080664	71	48	F	0
-input1.bam_1	FBtr0080664	71	49	F	0
 input1.bam_1	FBtr0080664	71	50	F	16.0
 input1.bam_1	FBtr0080664	71	51	F	15.0
 input1.bam_1	FBtr0080664	71	52	F	15.0
-input1.bam_1	FBtr0080664	71	53	F	0
-input1.bam_1	FBtr0080664	71	54	F	0
-input1.bam_1	FBtr0080664	71	55	F	0
 input1.bam_1	FBtr0080664	71	56	F	16.0
-input1.bam_1	FBtr0080664	71	57	F	0
-input1.bam_1	FBtr0080664	71	58	F	0
-input1.bam_1	FBtr0080664	71	59	F	0
-input1.bam_1	FBtr0080664	71	60	F	0
-input1.bam_1	FBtr0080664	71	61	F	0
-input1.bam_1	FBtr0080664	71	62	F	0
-input1.bam_1	FBtr0080664	71	63	F	0
-input1.bam_1	FBtr0080664	71	64	F	0
-input1.bam_1	FBtr0080664	71	65	F	0
-input1.bam_1	FBtr0080664	71	66	F	0
-input1.bam_1	FBtr0080664	71	67	F	0
-input1.bam_1	FBtr0080664	71	68	F	0
-input1.bam_1	FBtr0080664	71	69	F	0
-input1.bam_1	FBtr0080664	71	70	F	0
 input1.bam_1	FBtr0080664	71	71	F	0
Binary file test-data/doubled_mean.pdf has changed
--- a/test-data/doubled_readmap.tab	Tue Aug 22 12:05:47 2017 -0400
+++ b/test-data/doubled_readmap.tab	Fri Aug 25 12:22:03 2017 -0400
@@ -1,128 +1,41 @@
 Dataset	Chromosome	Chrom_length	Coordinate	Polarity	Counts
 input1.bam_0	FBtr0070001	72	1	F	1
-input1.bam_0	FBtr0070001	72	2	F	0
-input1.bam_0	FBtr0070001	72	3	F	0
-input1.bam_0	FBtr0070001	72	4	F	0
-input1.bam_0	FBtr0070001	72	5	F	0
-input1.bam_0	FBtr0070001	72	6	F	0
 input1.bam_0	FBtr0070001	72	7	F	6
 input1.bam_0	FBtr0070001	72	8	F	3
-input1.bam_0	FBtr0070001	72	9	F	0
-input1.bam_0	FBtr0070001	72	10	F	0
 input1.bam_0	FBtr0070001	72	11	F	2
-input1.bam_0	FBtr0070001	72	12	F	0
-input1.bam_0	FBtr0070001	72	13	F	0
-input1.bam_0	FBtr0070001	72	14	F	0
-input1.bam_0	FBtr0070001	72	15	F	0
 input1.bam_0	FBtr0070001	72	16	F	1
 input1.bam_0	FBtr0070001	72	17	F	1
 input1.bam_0	FBtr0070001	72	18	F	1
-input1.bam_0	FBtr0070001	72	19	F	0
-input1.bam_0	FBtr0070001	72	20	F	0
-input1.bam_0	FBtr0070001	72	21	F	0
-input1.bam_0	FBtr0070001	72	22	F	0
-input1.bam_0	FBtr0070001	72	23	F	0
-input1.bam_0	FBtr0070001	72	24	F	0
-input1.bam_0	FBtr0070001	72	25	F	0
-input1.bam_0	FBtr0070001	72	26	F	0
 input1.bam_0	FBtr0070001	72	27	F	2
-input1.bam_0	FBtr0070001	72	28	F	0
-input1.bam_0	FBtr0070001	72	29	F	0
 input1.bam_0	FBtr0070001	72	30	F	1
 input1.bam_0	FBtr0070001	72	31	F	11
 input1.bam_0	FBtr0070001	72	32	F	27
-input1.bam_0	FBtr0070001	72	33	F	0
 input1.bam_0	FBtr0070001	72	34	F	1
-input1.bam_0	FBtr0070001	72	35	F	0
-input1.bam_0	FBtr0070001	72	36	F	0
-input1.bam_0	FBtr0070001	72	37	F	0
-input1.bam_0	FBtr0070001	72	38	F	0
-input1.bam_0	FBtr0070001	72	39	F	0
-input1.bam_0	FBtr0070001	72	40	F	0
-input1.bam_0	FBtr0070001	72	41	F	0
-input1.bam_0	FBtr0070001	72	42	F	0
-input1.bam_0	FBtr0070001	72	43	F	0
-input1.bam_0	FBtr0070001	72	44	F	0
-input1.bam_0	FBtr0070001	72	45	F	0
-input1.bam_0	FBtr0070001	72	46	F	0
-input1.bam_0	FBtr0070001	72	47	F	0
-input1.bam_0	FBtr0070001	72	48	F	0
-input1.bam_0	FBtr0070001	72	49	F	0
-input1.bam_0	FBtr0070001	72	50	F	0
-input1.bam_0	FBtr0070001	72	51	F	0
-input1.bam_0	FBtr0070001	72	52	F	0
-input1.bam_0	FBtr0070001	72	53	F	0
 input1.bam_0	FBtr0070001	72	72	F	0
 input1.bam_0	FBtr0070533	72	1	F	1
-input1.bam_0	FBtr0070533	72	2	F	0
-input1.bam_0	FBtr0070533	72	3	F	0
-input1.bam_0	FBtr0070533	72	4	F	0
-input1.bam_0	FBtr0070533	72	5	F	0
-input1.bam_0	FBtr0070533	72	6	F	0
-input1.bam_0	FBtr0070533	72	7	F	0
-input1.bam_0	FBtr0070533	72	8	F	0
-input1.bam_0	FBtr0070533	72	9	F	0
-input1.bam_0	FBtr0070533	72	10	F	0
-input1.bam_0	FBtr0070533	72	11	F	0
 input1.bam_0	FBtr0070533	72	12	F	2
-input1.bam_0	FBtr0070533	72	13	F	0
-input1.bam_0	FBtr0070533	72	14	F	0
 input1.bam_0	FBtr0070533	72	15	F	1
-input1.bam_0	FBtr0070533	72	16	F	0
-input1.bam_0	FBtr0070533	72	17	F	0
-input1.bam_0	FBtr0070533	72	18	F	0
 input1.bam_0	FBtr0070533	72	19	F	5
 input1.bam_0	FBtr0070533	72	20	F	1
 input1.bam_0	FBtr0070533	72	21	F	1
 input1.bam_0	FBtr0070533	72	22	F	1
-input1.bam_0	FBtr0070533	72	23	F	0
-input1.bam_0	FBtr0070533	72	24	F	0
 input1.bam_0	FBtr0070533	72	25	F	1
 input1.bam_0	FBtr0070533	72	26	F	1
-input1.bam_0	FBtr0070533	72	27	F	0
 input1.bam_0	FBtr0070533	72	28	F	1
-input1.bam_0	FBtr0070533	72	29	F	0
-input1.bam_0	FBtr0070533	72	30	F	0
-input1.bam_0	FBtr0070533	72	31	F	0
 input1.bam_0	FBtr0070533	72	32	F	4
-input1.bam_0	FBtr0070533	72	33	F	0
-input1.bam_0	FBtr0070533	72	34	F	0
 input1.bam_0	FBtr0070533	72	35	F	1
-input1.bam_0	FBtr0070533	72	36	F	0
 input1.bam_0	FBtr0070533	72	37	F	2
 input1.bam_0	FBtr0070533	72	38	F	2
-input1.bam_0	FBtr0070533	72	39	F	0
-input1.bam_0	FBtr0070533	72	40	F	0
-input1.bam_0	FBtr0070533	72	41	F	0
-input1.bam_0	FBtr0070533	72	42	F	0
-input1.bam_0	FBtr0070533	72	43	F	0
-input1.bam_0	FBtr0070533	72	44	F	0
-input1.bam_0	FBtr0070533	72	45	F	0
-input1.bam_0	FBtr0070533	72	46	F	0
-input1.bam_0	FBtr0070533	72	47	F	0
-input1.bam_0	FBtr0070533	72	48	F	0
-input1.bam_0	FBtr0070533	72	49	F	0
-input1.bam_0	FBtr0070533	72	50	F	0
-input1.bam_0	FBtr0070533	72	51	F	0
-input1.bam_0	FBtr0070533	72	52	F	0
-input1.bam_0	FBtr0070533	72	53	F	0
-input1.bam_0	FBtr0070533	72	54	F	0
-input1.bam_0	FBtr0070533	72	55	F	0
 input1.bam_0	FBtr0070533	72	72	F	0
 input1.bam_0	FBtr0070603	72	1	F	2
-input1.bam_0	FBtr0070603	72	2	F	0
 input1.bam_0	FBtr0070603	72	3	F	1
 input1.bam_0	FBtr0070603	72	4	F	1
-input1.bam_0	FBtr0070603	72	5	F	0
 input1.bam_0	FBtr0070603	72	6	F	1
 input1.bam_0	FBtr0070603	72	7	F	7
 input1.bam_0	FBtr0070603	72	8	F	4
 input1.bam_0	FBtr0070603	72	9	F	7
-input1.bam_0	FBtr0070603	72	10	F	0
-input1.bam_0	FBtr0070603	72	11	F	0
 input1.bam_0	FBtr0070603	72	12	F	2
 input1.bam_0	FBtr0070603	72	13	F	1
-input1.bam_0	FBtr0070603	72	14	F	0
 input1.bam_0	FBtr0070603	72	15	F	2
 input1.bam_0	FBtr0070603	72	16	F	2
 input1.bam_0	FBtr0070603	72	17	F	3
@@ -131,602 +44,112 @@
 input1.bam_0	FBtr0070603	72	20	F	3
 input1.bam_0	FBtr0070603	72	21	F	1
 input1.bam_0	FBtr0070603	72	22	F	3
-input1.bam_0	FBtr0070603	72	23	F	0
 input1.bam_0	FBtr0070603	72	24	F	2
 input1.bam_0	FBtr0070603	72	25	F	1
 input1.bam_0	FBtr0070603	72	26	F	6
 input1.bam_0	FBtr0070603	72	27	F	3
-input1.bam_0	FBtr0070603	72	28	F	0
-input1.bam_0	FBtr0070603	72	29	F	0
-input1.bam_0	FBtr0070603	72	30	F	0
-input1.bam_0	FBtr0070603	72	31	F	0
 input1.bam_0	FBtr0070603	72	32	F	1
-input1.bam_0	FBtr0070603	72	33	F	0
 input1.bam_0	FBtr0070603	72	34	F	3
-input1.bam_0	FBtr0070603	72	35	F	0
-input1.bam_0	FBtr0070603	72	36	F	0
-input1.bam_0	FBtr0070603	72	37	F	0
 input1.bam_0	FBtr0070603	72	38	F	1
-input1.bam_0	FBtr0070603	72	39	F	0
-input1.bam_0	FBtr0070603	72	40	F	0
-input1.bam_0	FBtr0070603	72	41	F	0
 input1.bam_0	FBtr0070603	72	42	F	1
-input1.bam_0	FBtr0070603	72	43	F	0
-input1.bam_0	FBtr0070603	72	44	F	0
-input1.bam_0	FBtr0070603	72	45	F	0
-input1.bam_0	FBtr0070603	72	46	F	0
-input1.bam_0	FBtr0070603	72	47	F	0
-input1.bam_0	FBtr0070603	72	48	F	0
-input1.bam_0	FBtr0070603	72	49	F	0
-input1.bam_0	FBtr0070603	72	50	F	0
 input1.bam_0	FBtr0070603	72	51	F	1
-input1.bam_0	FBtr0070603	72	52	F	0
-input1.bam_0	FBtr0070603	72	53	F	0
-input1.bam_0	FBtr0070603	72	54	F	0
-input1.bam_0	FBtr0070603	72	55	F	0
 input1.bam_0	FBtr0070603	72	56	F	1
-input1.bam_0	FBtr0070603	72	57	F	0
-input1.bam_0	FBtr0070603	72	58	F	0
-input1.bam_0	FBtr0070603	72	59	F	0
-input1.bam_0	FBtr0070603	72	60	F	0
-input1.bam_0	FBtr0070603	72	61	F	0
-input1.bam_0	FBtr0070603	72	62	F	0
-input1.bam_0	FBtr0070603	72	63	F	0
-input1.bam_0	FBtr0070603	72	64	F	0
-input1.bam_0	FBtr0070603	72	65	F	0
-input1.bam_0	FBtr0070603	72	66	F	0
-input1.bam_0	FBtr0070603	72	67	F	0
-input1.bam_0	FBtr0070603	72	68	F	0
-input1.bam_0	FBtr0070603	72	69	F	0
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-input1.bam_1	FBtr0080609	72	59	F	0
-input1.bam_1	FBtr0080609	72	60	F	0
-input1.bam_1	FBtr0080609	72	61	F	0
-input1.bam_1	FBtr0080609	72	62	F	0
-input1.bam_1	FBtr0080609	72	63	F	0
-input1.bam_1	FBtr0080609	72	64	F	0
-input1.bam_1	FBtr0080609	72	65	F	0
-input1.bam_1	FBtr0080609	72	66	F	0
-input1.bam_1	FBtr0080609	72	67	F	0
-input1.bam_1	FBtr0080609	72	68	F	0
 input1.bam_1	FBtr0080609	72	72	F	0
 input1.bam_1	FBtr0080644	72	1	F	1
-input1.bam_1	FBtr0080644	72	2	F	0
-input1.bam_1	FBtr0080644	72	3	F	0
 input1.bam_1	FBtr0080644	72	4	F	2
-input1.bam_1	FBtr0080644	72	5	F	0
-input1.bam_1	FBtr0080644	72	6	F	0
 input1.bam_1	FBtr0080644	72	7	F	1
-input1.bam_1	FBtr0080644	72	8	F	0
-input1.bam_1	FBtr0080644	72	9	F	0
-input1.bam_1	FBtr0080644	72	10	F	0
-input1.bam_1	FBtr0080644	72	11	F	0
 input1.bam_1	FBtr0080644	72	12	F	2
-input1.bam_1	FBtr0080644	72	13	F	0
-input1.bam_1	FBtr0080644	72	14	F	0
-input1.bam_1	FBtr0080644	72	15	F	0
-input1.bam_1	FBtr0080644	72	16	F	0
-input1.bam_1	FBtr0080644	72	17	F	0
-input1.bam_1	FBtr0080644	72	18	F	0
-input1.bam_1	FBtr0080644	72	19	F	0
-input1.bam_1	FBtr0080644	72	20	F	0
-input1.bam_1	FBtr0080644	72	21	F	0
-input1.bam_1	FBtr0080644	72	22	F	0
-input1.bam_1	FBtr0080644	72	23	F	0
-input1.bam_1	FBtr0080644	72	24	F	0
-input1.bam_1	FBtr0080644	72	25	F	0
-input1.bam_1	FBtr0080644	72	26	F	0
-input1.bam_1	FBtr0080644	72	27	F	0
 input1.bam_1	FBtr0080644	72	72	F	0
 input1.bam_1	FBtr0080646	72	1	F	1
-input1.bam_1	FBtr0080646	72	2	F	0
-input1.bam_1	FBtr0080646	72	3	F	0
-input1.bam_1	FBtr0080646	72	4	F	0
-input1.bam_1	FBtr0080646	72	5	F	0
 input1.bam_1	FBtr0080646	72	6	F	1
 input1.bam_1	FBtr0080646	72	7	F	1
-input1.bam_1	FBtr0080646	72	8	F	0
-input1.bam_1	FBtr0080646	72	9	F	0
-input1.bam_1	FBtr0080646	72	10	F	0
-input1.bam_1	FBtr0080646	72	11	F	0
-input1.bam_1	FBtr0080646	72	12	F	0
-input1.bam_1	FBtr0080646	72	13	F	0
-input1.bam_1	FBtr0080646	72	14	F	0
-input1.bam_1	FBtr0080646	72	15	F	0
-input1.bam_1	FBtr0080646	72	16	F	0
-input1.bam_1	FBtr0080646	72	17	F	0
-input1.bam_1	FBtr0080646	72	18	F	0
-input1.bam_1	FBtr0080646	72	19	F	0
-input1.bam_1	FBtr0080646	72	20	F	0
-input1.bam_1	FBtr0080646	72	21	F	0
-input1.bam_1	FBtr0080646	72	22	F	0
-input1.bam_1	FBtr0080646	72	23	F	0
-input1.bam_1	FBtr0080646	72	24	F	0
-input1.bam_1	FBtr0080646	72	25	F	0
-input1.bam_1	FBtr0080646	72	26	F	0
-input1.bam_1	FBtr0080646	72	27	F	0
 input1.bam_1	FBtr0080646	72	72	F	0
 input1.bam_1	FBtr0080647	72	1	F	3
-input1.bam_1	FBtr0080647	72	2	F	0
 input1.bam_1	FBtr0080647	72	3	F	1
-input1.bam_1	FBtr0080647	72	4	F	0
-input1.bam_1	FBtr0080647	72	5	F	0
 input1.bam_1	FBtr0080647	72	6	F	2
-input1.bam_1	FBtr0080647	72	7	F	0
 input1.bam_1	FBtr0080647	72	8	F	1
-input1.bam_1	FBtr0080647	72	9	F	0
-input1.bam_1	FBtr0080647	72	10	F	0
 input1.bam_1	FBtr0080647	72	11	F	2
 input1.bam_1	FBtr0080647	72	12	F	1
-input1.bam_1	FBtr0080647	72	13	F	0
-input1.bam_1	FBtr0080647	72	14	F	0
-input1.bam_1	FBtr0080647	72	15	F	0
-input1.bam_1	FBtr0080647	72	16	F	0
-input1.bam_1	FBtr0080647	72	17	F	0
-input1.bam_1	FBtr0080647	72	18	F	0
-input1.bam_1	FBtr0080647	72	19	F	0
-input1.bam_1	FBtr0080647	72	20	F	0
-input1.bam_1	FBtr0080647	72	21	F	0
-input1.bam_1	FBtr0080647	72	22	F	0
-input1.bam_1	FBtr0080647	72	23	F	0
-input1.bam_1	FBtr0080647	72	24	F	0
-input1.bam_1	FBtr0080647	72	25	F	0
-input1.bam_1	FBtr0080647	72	26	F	0
-input1.bam_1	FBtr0080647	72	27	F	0
 input1.bam_1	FBtr0080647	72	72	F	0
 input1.bam_1	FBtr0080660	72	1	F	0
 input1.bam_1	FBtr0080660	72	4	F	4
-input1.bam_1	FBtr0080660	72	5	F	0
-input1.bam_1	FBtr0080660	72	6	F	0
 input1.bam_1	FBtr0080660	72	7	F	3
-input1.bam_1	FBtr0080660	72	8	F	0
-input1.bam_1	FBtr0080660	72	9	F	0
-input1.bam_1	FBtr0080660	72	10	F	0
-input1.bam_1	FBtr0080660	72	11	F	0
-input1.bam_1	FBtr0080660	72	12	F	0
-input1.bam_1	FBtr0080660	72	13	F	0
-input1.bam_1	FBtr0080660	72	14	F	0
-input1.bam_1	FBtr0080660	72	15	F	0
-input1.bam_1	FBtr0080660	72	16	F	0
-input1.bam_1	FBtr0080660	72	17	F	0
-input1.bam_1	FBtr0080660	72	18	F	0
-input1.bam_1	FBtr0080660	72	19	F	0
-input1.bam_1	FBtr0080660	72	20	F	0
-input1.bam_1	FBtr0080660	72	21	F	0
-input1.bam_1	FBtr0080660	72	22	F	0
-input1.bam_1	FBtr0080660	72	23	F	0
-input1.bam_1	FBtr0080660	72	24	F	0
-input1.bam_1	FBtr0080660	72	25	F	0
-input1.bam_1	FBtr0080660	72	26	F	0
-input1.bam_1	FBtr0080660	72	27	F	0
 input1.bam_1	FBtr0080660	72	72	F	0
 input1.bam_1	FBtr0080663	71	1	F	22
-input1.bam_1	FBtr0080663	71	2	F	0
 input1.bam_1	FBtr0080663	71	3	F	56
 input1.bam_1	FBtr0080663	71	4	F	4
-input1.bam_1	FBtr0080663	71	5	F	0
-input1.bam_1	FBtr0080663	71	6	F	0
 input1.bam_1	FBtr0080663	71	7	F	1
 input1.bam_1	FBtr0080663	71	8	F	4
-input1.bam_1	FBtr0080663	71	9	F	0
-input1.bam_1	FBtr0080663	71	10	F	0
-input1.bam_1	FBtr0080663	71	11	F	0
 input1.bam_1	FBtr0080663	71	12	F	2
-input1.bam_1	FBtr0080663	71	13	F	0
 input1.bam_1	FBtr0080663	71	14	F	2
 input1.bam_1	FBtr0080663	71	15	F	1
 input1.bam_1	FBtr0080663	71	16	F	3
 input1.bam_1	FBtr0080663	71	17	F	7
-input1.bam_1	FBtr0080663	71	18	F	0
-input1.bam_1	FBtr0080663	71	19	F	0
-input1.bam_1	FBtr0080663	71	20	F	0
-input1.bam_1	FBtr0080663	71	21	F	0
-input1.bam_1	FBtr0080663	71	22	F	0
-input1.bam_1	FBtr0080663	71	23	F	0
-input1.bam_1	FBtr0080663	71	24	F	0
-input1.bam_1	FBtr0080663	71	25	F	0
 input1.bam_1	FBtr0080663	71	26	F	1
-input1.bam_1	FBtr0080663	71	27	F	0
-input1.bam_1	FBtr0080663	71	28	F	0
-input1.bam_1	FBtr0080663	71	29	F	0
-input1.bam_1	FBtr0080663	71	30	F	0
-input1.bam_1	FBtr0080663	71	31	F	0
 input1.bam_1	FBtr0080663	71	32	F	2
-input1.bam_1	FBtr0080663	71	33	F	0
-input1.bam_1	FBtr0080663	71	34	F	0
-input1.bam_1	FBtr0080663	71	35	F	0
-input1.bam_1	FBtr0080663	71	36	F	0
-input1.bam_1	FBtr0080663	71	37	F	0
-input1.bam_1	FBtr0080663	71	38	F	0
-input1.bam_1	FBtr0080663	71	39	F	0
-input1.bam_1	FBtr0080663	71	40	F	0
-input1.bam_1	FBtr0080663	71	41	F	0
-input1.bam_1	FBtr0080663	71	42	F	0
-input1.bam_1	FBtr0080663	71	43	F	0
-input1.bam_1	FBtr0080663	71	44	F	0
-input1.bam_1	FBtr0080663	71	45	F	0
-input1.bam_1	FBtr0080663	71	46	F	0
-input1.bam_1	FBtr0080663	71	47	F	0
 input1.bam_1	FBtr0080663	71	50	F	1
 input1.bam_1	FBtr0080663	71	51	F	9
-input1.bam_1	FBtr0080663	71	52	F	0
-input1.bam_1	FBtr0080663	71	53	F	0
-input1.bam_1	FBtr0080663	71	54	F	0
-input1.bam_1	FBtr0080663	71	55	F	0
-input1.bam_1	FBtr0080663	71	56	F	0
-input1.bam_1	FBtr0080663	71	57	F	0
-input1.bam_1	FBtr0080663	71	58	F	0
-input1.bam_1	FBtr0080663	71	59	F	0
-input1.bam_1	FBtr0080663	71	60	F	0
-input1.bam_1	FBtr0080663	71	61	F	0
-input1.bam_1	FBtr0080663	71	62	F	0
-input1.bam_1	FBtr0080663	71	63	F	0
-input1.bam_1	FBtr0080663	71	64	F	0
-input1.bam_1	FBtr0080663	71	65	F	0
-input1.bam_1	FBtr0080663	71	66	F	0
-input1.bam_1	FBtr0080663	71	67	F	0
-input1.bam_1	FBtr0080663	71	68	F	0
-input1.bam_1	FBtr0080663	71	69	F	0
-input1.bam_1	FBtr0080663	71	70	F	0
 input1.bam_1	FBtr0080663	71	71	F	0
 input1.bam_1	FBtr0080664	71	1	F	16
-input1.bam_1	FBtr0080664	71	2	F	0
 input1.bam_1	FBtr0080664	71	3	F	56
 input1.bam_1	FBtr0080664	71	4	F	4
-input1.bam_1	FBtr0080664	71	5	F	0
 input1.bam_1	FBtr0080664	71	6	F	1
 input1.bam_1	FBtr0080664	71	7	F	1
 input1.bam_1	FBtr0080664	71	8	F	4
 input1.bam_1	FBtr0080664	71	9	F	1
-input1.bam_1	FBtr0080664	71	10	F	0
 input1.bam_1	FBtr0080664	71	11	F	3
 input1.bam_1	FBtr0080664	71	12	F	3
 input1.bam_1	FBtr0080664	71	13	F	2
 input1.bam_1	FBtr0080664	71	14	F	3
-input1.bam_1	FBtr0080664	71	15	F	0
 input1.bam_1	FBtr0080664	71	16	F	2
 input1.bam_1	FBtr0080664	71	17	F	10
 input1.bam_1	FBtr0080664	71	18	F	1
-input1.bam_1	FBtr0080664	71	19	F	0
-input1.bam_1	FBtr0080664	71	20	F	0
 input1.bam_1	FBtr0080664	71	21	F	1
-input1.bam_1	FBtr0080664	71	22	F	0
-input1.bam_1	FBtr0080664	71	23	F	0
-input1.bam_1	FBtr0080664	71	24	F	0
-input1.bam_1	FBtr0080664	71	25	F	0
-input1.bam_1	FBtr0080664	71	26	F	0
-input1.bam_1	FBtr0080664	71	27	F	0
 input1.bam_1	FBtr0080664	71	28	F	2
-input1.bam_1	FBtr0080664	71	29	F	0
-input1.bam_1	FBtr0080664	71	30	F	0
-input1.bam_1	FBtr0080664	71	31	F	0
 input1.bam_1	FBtr0080664	71	32	F	1
 input1.bam_1	FBtr0080664	71	33	F	1
 input1.bam_1	FBtr0080664	71	34	F	1
@@ -3170,36 +592,8 @@
 input1.bam_1	FBtr0080664	71	36	F	1
 input1.bam_1	FBtr0080664	71	37	F	1
 input1.bam_1	FBtr0080664	71	38	F	1
-input1.bam_1	FBtr0080664	71	39	F	0
-input1.bam_1	FBtr0080664	71	40	F	0
-input1.bam_1	FBtr0080664	71	41	F	0
-input1.bam_1	FBtr0080664	71	42	F	0
-input1.bam_1	FBtr0080664	71	43	F	0
-input1.bam_1	FBtr0080664	71	44	F	0
-input1.bam_1	FBtr0080664	71	45	F	0
-input1.bam_1	FBtr0080664	71	46	F	0
-input1.bam_1	FBtr0080664	71	47	F	0
-input1.bam_1	FBtr0080664	71	48	F	0
-input1.bam_1	FBtr0080664	71	49	F	0
 input1.bam_1	FBtr0080664	71	50	F	2
 input1.bam_1	FBtr0080664	71	51	F	7
 input1.bam_1	FBtr0080664	71	52	F	1
-input1.bam_1	FBtr0080664	71	53	F	0
-input1.bam_1	FBtr0080664	71	54	F	0
-input1.bam_1	FBtr0080664	71	55	F	0
 input1.bam_1	FBtr0080664	71	56	F	1
-input1.bam_1	FBtr0080664	71	57	F	0
-input1.bam_1	FBtr0080664	71	58	F	0
-input1.bam_1	FBtr0080664	71	59	F	0
-input1.bam_1	FBtr0080664	71	60	F	0
-input1.bam_1	FBtr0080664	71	61	F	0
-input1.bam_1	FBtr0080664	71	62	F	0
-input1.bam_1	FBtr0080664	71	63	F	0
-input1.bam_1	FBtr0080664	71	64	F	0
-input1.bam_1	FBtr0080664	71	65	F	0
-input1.bam_1	FBtr0080664	71	66	F	0
-input1.bam_1	FBtr0080664	71	67	F	0
-input1.bam_1	FBtr0080664	71	68	F	0
-input1.bam_1	FBtr0080664	71	69	F	0
-input1.bam_1	FBtr0080664	71	70	F	0
 input1.bam_1	FBtr0080664	71	71	F	0
Binary file test-data/mean.pdf has changed
--- a/test-data/mean.tab	Tue Aug 22 12:05:47 2017 -0400
+++ b/test-data/mean.tab	Fri Aug 25 12:22:03 2017 -0400
@@ -1,128 +1,41 @@
 Dataset	Chromosome	Chrom_length	Coordinate	Polarity	Mean
 input1.bam	FBtr0070001	72	1	F	17.0
-input1.bam	FBtr0070001	72	2	F	0
-input1.bam	FBtr0070001	72	3	F	0
-input1.bam	FBtr0070001	72	4	F	0
-input1.bam	FBtr0070001	72	5	F	0
-input1.bam	FBtr0070001	72	6	F	0
 input1.bam	FBtr0070001	72	7	F	20.3
 input1.bam	FBtr0070001	72	8	F	21.3
-input1.bam	FBtr0070001	72	9	F	0
-input1.bam	FBtr0070001	72	10	F	0
 input1.bam	FBtr0070001	72	11	F	20.5
-input1.bam	FBtr0070001	72	12	F	0
-input1.bam	FBtr0070001	72	13	F	0
-input1.bam	FBtr0070001	72	14	F	0
-input1.bam	FBtr0070001	72	15	F	0
 input1.bam	FBtr0070001	72	16	F	19.0
 input1.bam	FBtr0070001	72	17	F	23.0
 input1.bam	FBtr0070001	72	18	F	16.0
-input1.bam	FBtr0070001	72	19	F	0
-input1.bam	FBtr0070001	72	20	F	0
-input1.bam	FBtr0070001	72	21	F	0
-input1.bam	FBtr0070001	72	22	F	0
-input1.bam	FBtr0070001	72	23	F	0
-input1.bam	FBtr0070001	72	24	F	0
-input1.bam	FBtr0070001	72	25	F	0
-input1.bam	FBtr0070001	72	26	F	0
 input1.bam	FBtr0070001	72	27	F	23.5
-input1.bam	FBtr0070001	72	28	F	0
-input1.bam	FBtr0070001	72	29	F	0
 input1.bam	FBtr0070001	72	30	F	23.0
 input1.bam	FBtr0070001	72	31	F	23.0
 input1.bam	FBtr0070001	72	32	F	22.0
-input1.bam	FBtr0070001	72	33	F	0
 input1.bam	FBtr0070001	72	34	F	20.0
-input1.bam	FBtr0070001	72	35	F	0
-input1.bam	FBtr0070001	72	36	F	0
-input1.bam	FBtr0070001	72	37	F	0
-input1.bam	FBtr0070001	72	38	F	0
-input1.bam	FBtr0070001	72	39	F	0
-input1.bam	FBtr0070001	72	40	F	0
-input1.bam	FBtr0070001	72	41	F	0
-input1.bam	FBtr0070001	72	42	F	0
-input1.bam	FBtr0070001	72	43	F	0
-input1.bam	FBtr0070001	72	44	F	0
-input1.bam	FBtr0070001	72	45	F	0
-input1.bam	FBtr0070001	72	46	F	0
-input1.bam	FBtr0070001	72	47	F	0
-input1.bam	FBtr0070001	72	48	F	0
-input1.bam	FBtr0070001	72	49	F	0
-input1.bam	FBtr0070001	72	50	F	0
-input1.bam	FBtr0070001	72	51	F	0
-input1.bam	FBtr0070001	72	52	F	0
-input1.bam	FBtr0070001	72	53	F	0
 input1.bam	FBtr0070001	72	72	F	0
 input1.bam	FBtr0070533	72	1	F	15.0
-input1.bam	FBtr0070533	72	2	F	0
-input1.bam	FBtr0070533	72	3	F	0
-input1.bam	FBtr0070533	72	4	F	0
-input1.bam	FBtr0070533	72	5	F	0
-input1.bam	FBtr0070533	72	6	F	0
-input1.bam	FBtr0070533	72	7	F	0
-input1.bam	FBtr0070533	72	8	F	0
-input1.bam	FBtr0070533	72	9	F	0
-input1.bam	FBtr0070533	72	10	F	0
-input1.bam	FBtr0070533	72	11	F	0
 input1.bam	FBtr0070533	72	12	F	18.0
-input1.bam	FBtr0070533	72	13	F	0
-input1.bam	FBtr0070533	72	14	F	0
 input1.bam	FBtr0070533	72	15	F	15.0
-input1.bam	FBtr0070533	72	16	F	0
-input1.bam	FBtr0070533	72	17	F	0
-input1.bam	FBtr0070533	72	18	F	0
 input1.bam	FBtr0070533	72	19	F	21.8
 input1.bam	FBtr0070533	72	20	F	23.0
 input1.bam	FBtr0070533	72	21	F	18.0
 input1.bam	FBtr0070533	72	22	F	20.0
-input1.bam	FBtr0070533	72	23	F	0
-input1.bam	FBtr0070533	72	24	F	0
 input1.bam	FBtr0070533	72	25	F	17.0
 input1.bam	FBtr0070533	72	26	F	16.0
-input1.bam	FBtr0070533	72	27	F	0
 input1.bam	FBtr0070533	72	28	F	25.0
-input1.bam	FBtr0070533	72	29	F	0
-input1.bam	FBtr0070533	72	30	F	0
-input1.bam	FBtr0070533	72	31	F	0
 input1.bam	FBtr0070533	72	32	F	20.5
-input1.bam	FBtr0070533	72	33	F	0
-input1.bam	FBtr0070533	72	34	F	0
 input1.bam	FBtr0070533	72	35	F	19.0
-input1.bam	FBtr0070533	72	36	F	0
 input1.bam	FBtr0070533	72	37	F	19.0
 input1.bam	FBtr0070533	72	38	F	18.0
-input1.bam	FBtr0070533	72	39	F	0
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-input2.bam	FBtr0079729	72	31	F	0
-input2.bam	FBtr0079729	72	32	F	0
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 input2.bam	FBtr0079729	72	53	F	16.0
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 input2.bam	FBtr0079752	72	1	F	0
 input2.bam	FBtr0079752	72	49	F	24.0
-input2.bam	FBtr0079752	72	50	F	0
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-input2.bam	FBtr0079752	72	70	F	0
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 input2.bam	FBtr0079752	72	72	F	0
 input2.bam	FBtr0079820	74	1	F	0
 input2.bam	FBtr0079820	74	39	F	16.0
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-input2.bam	FBtr0079820	74	49	F	0
-input2.bam	FBtr0079820	74	50	F	0
-input2.bam	FBtr0079820	74	51	F	0
 input2.bam	FBtr0079820	74	52	F	21.0
 input2.bam	FBtr0079820	74	53	F	20.0
 input2.bam	FBtr0079820	74	54	F	19.3
@@ -2807,174 +534,33 @@
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 input2.bam	FBtr0079820	74	59	F	15.5
 input2.bam	FBtr0079820	74	60	F	15.0
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 input2.bam	FBtr0080609	72	1	F	0
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 input2.bam	FBtr0080609	72	21	F	21.0
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 input2.bam	FBtr0080609	72	33	F	22.0
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 input2.bam	FBtr0080609	72	52	F	18.0
 input2.bam	FBtr0080609	72	53	F	19.0
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 input2.bam	FBtr0080644	72	72	F	0
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 input2.bam	FBtr0080646	72	51	F	21.0
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 input2.bam	FBtr0080646	72	57	F	15.5
 input2.bam	FBtr0080646	72	58	F	15.0
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 input2.bam	FBtr0080646	72	72	F	0
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 input2.bam	FBtr0080647	72	57	F	15.5
 input2.bam	FBtr0080647	72	58	F	15.0
-input2.bam	FBtr0080647	72	59	F	0
-input2.bam	FBtr0080647	72	60	F	0
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 input2.bam	FBtr0080647	72	72	F	0
 input2.bam	FBtr0080660	72	1	F	0
 input2.bam	FBtr0080660	72	58	F	15.0
-input2.bam	FBtr0080660	72	59	F	0
-input2.bam	FBtr0080660	72	60	F	0
-input2.bam	FBtr0080660	72	61	F	0
-input2.bam	FBtr0080660	72	62	F	0
-input2.bam	FBtr0080660	72	63	F	0
-input2.bam	FBtr0080660	72	64	F	0
-input2.bam	FBtr0080660	72	65	F	0
-input2.bam	FBtr0080660	72	66	F	0
-input2.bam	FBtr0080660	72	67	F	0
-input2.bam	FBtr0080660	72	68	F	0
-input2.bam	FBtr0080660	72	69	F	0
-input2.bam	FBtr0080660	72	70	F	0
-input2.bam	FBtr0080660	72	71	F	0
 input2.bam	FBtr0080660	72	72	F	0
 input2.bam	FBtr0080663	71	1	F	22.0
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-input2.bam	FBtr0080663	71	4	F	0
-input2.bam	FBtr0080663	71	5	F	0
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-input2.bam	FBtr0080663	71	7	F	0
-input2.bam	FBtr0080663	71	8	F	0
-input2.bam	FBtr0080663	71	9	F	0
-input2.bam	FBtr0080663	71	10	F	0
 input2.bam	FBtr0080663	71	11	F	21.0
 input2.bam	FBtr0080663	71	12	F	20.5
 input2.bam	FBtr0080663	71	13	F	19.8
@@ -2987,62 +573,14 @@
 input2.bam	FBtr0080663	71	20	F	16.7
 input2.bam	FBtr0080663	71	21	F	15.5
 input2.bam	FBtr0080663	71	22	F	15.3
-input2.bam	FBtr0080663	71	23	F	0
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-input2.bam	FBtr0080663	71	27	F	0
-input2.bam	FBtr0080663	71	28	F	0
-input2.bam	FBtr0080663	71	29	F	0
-input2.bam	FBtr0080663	71	30	F	0
 input2.bam	FBtr0080663	71	31	F	17.0
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-input2.bam	FBtr0080663	71	33	F	0
-input2.bam	FBtr0080663	71	34	F	0
-input2.bam	FBtr0080663	71	35	F	0
-input2.bam	FBtr0080663	71	36	F	0
-input2.bam	FBtr0080663	71	37	F	0
-input2.bam	FBtr0080663	71	38	F	0
-input2.bam	FBtr0080663	71	39	F	0
-input2.bam	FBtr0080663	71	40	F	0
-input2.bam	FBtr0080663	71	41	F	0
-input2.bam	FBtr0080663	71	42	F	0
-input2.bam	FBtr0080663	71	43	F	0
-input2.bam	FBtr0080663	71	44	F	0
-input2.bam	FBtr0080663	71	45	F	0
-input2.bam	FBtr0080663	71	46	F	0
-input2.bam	FBtr0080663	71	47	F	0
 input2.bam	FBtr0080663	71	50	F	15.5
 input2.bam	FBtr0080663	71	51	F	19.0
 input2.bam	FBtr0080663	71	52	F	15.0
-input2.bam	FBtr0080663	71	53	F	0
-input2.bam	FBtr0080663	71	54	F	0
-input2.bam	FBtr0080663	71	55	F	0
-input2.bam	FBtr0080663	71	56	F	0
 input2.bam	FBtr0080663	71	57	F	15.0
-input2.bam	FBtr0080663	71	58	F	0
-input2.bam	FBtr0080663	71	59	F	0
-input2.bam	FBtr0080663	71	60	F	0
-input2.bam	FBtr0080663	71	61	F	0
-input2.bam	FBtr0080663	71	62	F	0
-input2.bam	FBtr0080663	71	63	F	0
-input2.bam	FBtr0080663	71	64	F	0
-input2.bam	FBtr0080663	71	65	F	0
-input2.bam	FBtr0080663	71	66	F	0
-input2.bam	FBtr0080663	71	67	F	0
-input2.bam	FBtr0080663	71	68	F	0
-input2.bam	FBtr0080663	71	69	F	0
-input2.bam	FBtr0080663	71	70	F	0
 input2.bam	FBtr0080663	71	71	F	0
 input2.bam	FBtr0080664	71	1	F	22.0
-input2.bam	FBtr0080664	71	2	F	0
 input2.bam	FBtr0080664	71	3	F	23.0
-input2.bam	FBtr0080664	71	4	F	0
-input2.bam	FBtr0080664	71	5	F	0
-input2.bam	FBtr0080664	71	6	F	0
-input2.bam	FBtr0080664	71	7	F	0
-input2.bam	FBtr0080664	71	8	F	0
-input2.bam	FBtr0080664	71	9	F	0
 input2.bam	FBtr0080664	71	10	F	23.0
 input2.bam	FBtr0080664	71	11	F	22.0
 input2.bam	FBtr0080664	71	12	F	21.0
@@ -3056,13 +594,7 @@
 input2.bam	FBtr0080664	71	20	F	16.0
 input2.bam	FBtr0080664	71	21	F	15.3
 input2.bam	FBtr0080664	71	22	F	16.2
-input2.bam	FBtr0080664	71	23	F	0
 input2.bam	FBtr0080664	71	24	F	15.0
-input2.bam	FBtr0080664	71	25	F	0
-input2.bam	FBtr0080664	71	26	F	0
-input2.bam	FBtr0080664	71	27	F	0
-input2.bam	FBtr0080664	71	28	F	0
-input2.bam	FBtr0080664	71	29	F	0
 input2.bam	FBtr0080664	71	30	F	21.0
 input2.bam	FBtr0080664	71	31	F	18.7
 input2.bam	FBtr0080664	71	32	F	18.3
@@ -3073,37 +605,13 @@
 input2.bam	FBtr0080664	71	37	F	17.7
 input2.bam	FBtr0080664	71	38	F	18.1
 input2.bam	FBtr0080664	71	39	F	17.0
-input2.bam	FBtr0080664	71	40	F	0
-input2.bam	FBtr0080664	71	41	F	0
 input2.bam	FBtr0080664	71	42	F	20.0
-input2.bam	FBtr0080664	71	43	F	0
-input2.bam	FBtr0080664	71	44	F	0
-input2.bam	FBtr0080664	71	45	F	0
-input2.bam	FBtr0080664	71	46	F	0
 input2.bam	FBtr0080664	71	47	F	15.0
-input2.bam	FBtr0080664	71	48	F	0
-input2.bam	FBtr0080664	71	49	F	0
 input2.bam	FBtr0080664	71	50	F	15.5
-input2.bam	FBtr0080664	71	51	F	0
 input2.bam	FBtr0080664	71	52	F	16.0
 input2.bam	FBtr0080664	71	53	F	19.0
-input2.bam	FBtr0080664	71	54	F	0
-input2.bam	FBtr0080664	71	55	F	0
 input2.bam	FBtr0080664	71	56	F	16.0
 input2.bam	FBtr0080664	71	57	F	15.0
-input2.bam	FBtr0080664	71	58	F	0
-input2.bam	FBtr0080664	71	59	F	0
-input2.bam	FBtr0080664	71	60	F	0
-input2.bam	FBtr0080664	71	61	F	0
-input2.bam	FBtr0080664	71	62	F	0
 input2.bam	FBtr0080664	71	62	R	23.0
-input2.bam	FBtr0080664	71	63	F	0
-input2.bam	FBtr0080664	71	64	F	0
-input2.bam	FBtr0080664	71	65	F	0
-input2.bam	FBtr0080664	71	66	F	0
-input2.bam	FBtr0080664	71	67	F	0
-input2.bam	FBtr0080664	71	68	F	0
-input2.bam	FBtr0080664	71	69	F	0
-input2.bam	FBtr0080664	71	70	F	0
 input2.bam	FBtr0080664	71	71	F	0
 input2.bam	FBtr0080664	71	71	R	22.0
Binary file test-data/median.pdf has changed
--- a/test-data/median.tab	Tue Aug 22 12:05:47 2017 -0400
+++ b/test-data/median.tab	Fri Aug 25 12:22:03 2017 -0400
@@ -1,128 +1,41 @@
 Dataset	Chromosome	Chrom_length	Coordinate	Polarity	Median
 input1.bam	FBtr0070001	72	1	F	17.0
-input1.bam	FBtr0070001	72	2	F	0
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 input2.bam	FBtr0080663	71	52	F	15.0
-input2.bam	FBtr0080663	71	53	F	0
-input2.bam	FBtr0080663	71	54	F	0
-input2.bam	FBtr0080663	71	55	F	0
-input2.bam	FBtr0080663	71	56	F	0
 input2.bam	FBtr0080663	71	57	F	15.0
-input2.bam	FBtr0080663	71	58	F	0
-input2.bam	FBtr0080663	71	59	F	0
-input2.bam	FBtr0080663	71	60	F	0
-input2.bam	FBtr0080663	71	61	F	0
-input2.bam	FBtr0080663	71	62	F	0
-input2.bam	FBtr0080663	71	63	F	0
-input2.bam	FBtr0080663	71	64	F	0
-input2.bam	FBtr0080663	71	65	F	0
-input2.bam	FBtr0080663	71	66	F	0
-input2.bam	FBtr0080663	71	67	F	0
-input2.bam	FBtr0080663	71	68	F	0
-input2.bam	FBtr0080663	71	69	F	0
-input2.bam	FBtr0080663	71	70	F	0
 input2.bam	FBtr0080663	71	71	F	0
 input2.bam	FBtr0080664	71	1	F	22.0
-input2.bam	FBtr0080664	71	2	F	0
 input2.bam	FBtr0080664	71	3	F	23.0
-input2.bam	FBtr0080664	71	4	F	0
-input2.bam	FBtr0080664	71	5	F	0
-input2.bam	FBtr0080664	71	6	F	0
-input2.bam	FBtr0080664	71	7	F	0
-input2.bam	FBtr0080664	71	8	F	0
-input2.bam	FBtr0080664	71	9	F	0
 input2.bam	FBtr0080664	71	10	F	23.0
 input2.bam	FBtr0080664	71	11	F	22.0
 input2.bam	FBtr0080664	71	12	F	21.0
@@ -3056,13 +594,7 @@
 input2.bam	FBtr0080664	71	20	F	16.0
 input2.bam	FBtr0080664	71	21	F	15.0
 input2.bam	FBtr0080664	71	22	F	15.5
-input2.bam	FBtr0080664	71	23	F	0
 input2.bam	FBtr0080664	71	24	F	15.0
-input2.bam	FBtr0080664	71	25	F	0
-input2.bam	FBtr0080664	71	26	F	0
-input2.bam	FBtr0080664	71	27	F	0
-input2.bam	FBtr0080664	71	28	F	0
-input2.bam	FBtr0080664	71	29	F	0
 input2.bam	FBtr0080664	71	30	F	21.0
 input2.bam	FBtr0080664	71	31	F	19.0
 input2.bam	FBtr0080664	71	32	F	18.0
@@ -3073,37 +605,13 @@
 input2.bam	FBtr0080664	71	37	F	18.0
 input2.bam	FBtr0080664	71	38	F	16.0
 input2.bam	FBtr0080664	71	39	F	17.0
-input2.bam	FBtr0080664	71	40	F	0
-input2.bam	FBtr0080664	71	41	F	0
 input2.bam	FBtr0080664	71	42	F	20.0
-input2.bam	FBtr0080664	71	43	F	0
-input2.bam	FBtr0080664	71	44	F	0
-input2.bam	FBtr0080664	71	45	F	0
-input2.bam	FBtr0080664	71	46	F	0
 input2.bam	FBtr0080664	71	47	F	15.0
-input2.bam	FBtr0080664	71	48	F	0
-input2.bam	FBtr0080664	71	49	F	0
 input2.bam	FBtr0080664	71	50	F	15.5
-input2.bam	FBtr0080664	71	51	F	0
 input2.bam	FBtr0080664	71	52	F	16.0
 input2.bam	FBtr0080664	71	53	F	19.0
-input2.bam	FBtr0080664	71	54	F	0
-input2.bam	FBtr0080664	71	55	F	0
 input2.bam	FBtr0080664	71	56	F	16.0
 input2.bam	FBtr0080664	71	57	F	15.0
-input2.bam	FBtr0080664	71	58	F	0
-input2.bam	FBtr0080664	71	59	F	0
-input2.bam	FBtr0080664	71	60	F	0
-input2.bam	FBtr0080664	71	61	F	0
-input2.bam	FBtr0080664	71	62	F	0
 input2.bam	FBtr0080664	71	62	R	23.0
-input2.bam	FBtr0080664	71	63	F	0
-input2.bam	FBtr0080664	71	64	F	0
-input2.bam	FBtr0080664	71	65	F	0
-input2.bam	FBtr0080664	71	66	F	0
-input2.bam	FBtr0080664	71	67	F	0
-input2.bam	FBtr0080664	71	68	F	0
-input2.bam	FBtr0080664	71	69	F	0
-input2.bam	FBtr0080664	71	70	F	0
 input2.bam	FBtr0080664	71	71	F	0
 input2.bam	FBtr0080664	71	71	R	22.0
--- a/test-data/readmap.tab	Tue Aug 22 12:05:47 2017 -0400
+++ b/test-data/readmap.tab	Fri Aug 25 12:22:03 2017 -0400
@@ -1,128 +1,41 @@
 Dataset	Chromosome	Chrom_length	Coordinate	Polarity	Counts
 input1.bam	FBtr0070001	72	1	F	1
-input1.bam	FBtr0070001	72	2	F	0
-input1.bam	FBtr0070001	72	3	F	0
-input1.bam	FBtr0070001	72	4	F	0
-input1.bam	FBtr0070001	72	5	F	0
-input1.bam	FBtr0070001	72	6	F	0
 input1.bam	FBtr0070001	72	7	F	6
 input1.bam	FBtr0070001	72	8	F	3
-input1.bam	FBtr0070001	72	9	F	0
-input1.bam	FBtr0070001	72	10	F	0
 input1.bam	FBtr0070001	72	11	F	2
-input1.bam	FBtr0070001	72	12	F	0
-input1.bam	FBtr0070001	72	13	F	0
-input1.bam	FBtr0070001	72	14	F	0
-input1.bam	FBtr0070001	72	15	F	0
 input1.bam	FBtr0070001	72	16	F	1
 input1.bam	FBtr0070001	72	17	F	1
 input1.bam	FBtr0070001	72	18	F	1
-input1.bam	FBtr0070001	72	19	F	0
-input1.bam	FBtr0070001	72	20	F	0
-input1.bam	FBtr0070001	72	21	F	0
-input1.bam	FBtr0070001	72	22	F	0
-input1.bam	FBtr0070001	72	23	F	0
-input1.bam	FBtr0070001	72	24	F	0
-input1.bam	FBtr0070001	72	25	F	0
-input1.bam	FBtr0070001	72	26	F	0
 input1.bam	FBtr0070001	72	27	F	2
-input1.bam	FBtr0070001	72	28	F	0
-input1.bam	FBtr0070001	72	29	F	0
 input1.bam	FBtr0070001	72	30	F	1
 input1.bam	FBtr0070001	72	31	F	11
 input1.bam	FBtr0070001	72	32	F	27
-input1.bam	FBtr0070001	72	33	F	0
 input1.bam	FBtr0070001	72	34	F	1
-input1.bam	FBtr0070001	72	35	F	0
-input1.bam	FBtr0070001	72	36	F	0
-input1.bam	FBtr0070001	72	37	F	0
-input1.bam	FBtr0070001	72	38	F	0
-input1.bam	FBtr0070001	72	39	F	0
-input1.bam	FBtr0070001	72	40	F	0
-input1.bam	FBtr0070001	72	41	F	0
-input1.bam	FBtr0070001	72	42	F	0
-input1.bam	FBtr0070001	72	43	F	0
-input1.bam	FBtr0070001	72	44	F	0
-input1.bam	FBtr0070001	72	45	F	0
-input1.bam	FBtr0070001	72	46	F	0
-input1.bam	FBtr0070001	72	47	F	0
-input1.bam	FBtr0070001	72	48	F	0
-input1.bam	FBtr0070001	72	49	F	0
-input1.bam	FBtr0070001	72	50	F	0
-input1.bam	FBtr0070001	72	51	F	0
-input1.bam	FBtr0070001	72	52	F	0
-input1.bam	FBtr0070001	72	53	F	0
 input1.bam	FBtr0070001	72	72	F	0
 input1.bam	FBtr0070533	72	1	F	1
-input1.bam	FBtr0070533	72	2	F	0
-input1.bam	FBtr0070533	72	3	F	0
-input1.bam	FBtr0070533	72	4	F	0
-input1.bam	FBtr0070533	72	5	F	0
-input1.bam	FBtr0070533	72	6	F	0
-input1.bam	FBtr0070533	72	7	F	0
-input1.bam	FBtr0070533	72	8	F	0
-input1.bam	FBtr0070533	72	9	F	0
-input1.bam	FBtr0070533	72	10	F	0
-input1.bam	FBtr0070533	72	11	F	0
 input1.bam	FBtr0070533	72	12	F	2
-input1.bam	FBtr0070533	72	13	F	0
-input1.bam	FBtr0070533	72	14	F	0
 input1.bam	FBtr0070533	72	15	F	1
-input1.bam	FBtr0070533	72	16	F	0
-input1.bam	FBtr0070533	72	17	F	0
-input1.bam	FBtr0070533	72	18	F	0
 input1.bam	FBtr0070533	72	19	F	5
 input1.bam	FBtr0070533	72	20	F	1
 input1.bam	FBtr0070533	72	21	F	1
 input1.bam	FBtr0070533	72	22	F	1
-input1.bam	FBtr0070533	72	23	F	0
-input1.bam	FBtr0070533	72	24	F	0
 input1.bam	FBtr0070533	72	25	F	1
 input1.bam	FBtr0070533	72	26	F	1
-input1.bam	FBtr0070533	72	27	F	0
 input1.bam	FBtr0070533	72	28	F	1
-input1.bam	FBtr0070533	72	29	F	0
-input1.bam	FBtr0070533	72	30	F	0
-input1.bam	FBtr0070533	72	31	F	0
 input1.bam	FBtr0070533	72	32	F	4
-input1.bam	FBtr0070533	72	33	F	0
-input1.bam	FBtr0070533	72	34	F	0
 input1.bam	FBtr0070533	72	35	F	1
-input1.bam	FBtr0070533	72	36	F	0
 input1.bam	FBtr0070533	72	37	F	2
 input1.bam	FBtr0070533	72	38	F	2
-input1.bam	FBtr0070533	72	39	F	0
-input1.bam	FBtr0070533	72	40	F	0
-input1.bam	FBtr0070533	72	41	F	0
-input1.bam	FBtr0070533	72	42	F	0
-input1.bam	FBtr0070533	72	43	F	0
-input1.bam	FBtr0070533	72	44	F	0
-input1.bam	FBtr0070533	72	45	F	0
-input1.bam	FBtr0070533	72	46	F	0
-input1.bam	FBtr0070533	72	47	F	0
-input1.bam	FBtr0070533	72	48	F	0
-input1.bam	FBtr0070533	72	49	F	0
-input1.bam	FBtr0070533	72	50	F	0
-input1.bam	FBtr0070533	72	51	F	0
-input1.bam	FBtr0070533	72	52	F	0
-input1.bam	FBtr0070533	72	53	F	0
-input1.bam	FBtr0070533	72	54	F	0
-input1.bam	FBtr0070533	72	55	F	0
 input1.bam	FBtr0070533	72	72	F	0
 input1.bam	FBtr0070603	72	1	F	2
-input1.bam	FBtr0070603	72	2	F	0
 input1.bam	FBtr0070603	72	3	F	1
 input1.bam	FBtr0070603	72	4	F	1
-input1.bam	FBtr0070603	72	5	F	0
 input1.bam	FBtr0070603	72	6	F	1
 input1.bam	FBtr0070603	72	7	F	7
 input1.bam	FBtr0070603	72	8	F	4
 input1.bam	FBtr0070603	72	9	F	7
-input1.bam	FBtr0070603	72	10	F	0
-input1.bam	FBtr0070603	72	11	F	0
 input1.bam	FBtr0070603	72	12	F	2
 input1.bam	FBtr0070603	72	13	F	1
-input1.bam	FBtr0070603	72	14	F	0
 input1.bam	FBtr0070603	72	15	F	2
 input1.bam	FBtr0070603	72	16	F	2
 input1.bam	FBtr0070603	72	17	F	3
@@ -131,602 +44,112 @@
 input1.bam	FBtr0070603	72	20	F	3
 input1.bam	FBtr0070603	72	21	F	1
 input1.bam	FBtr0070603	72	22	F	3
-input1.bam	FBtr0070603	72	23	F	0
 input1.bam	FBtr0070603	72	24	F	2
 input1.bam	FBtr0070603	72	25	F	1
 input1.bam	FBtr0070603	72	26	F	6
 input1.bam	FBtr0070603	72	27	F	3
-input1.bam	FBtr0070603	72	28	F	0
-input1.bam	FBtr0070603	72	29	F	0
-input1.bam	FBtr0070603	72	30	F	0
-input1.bam	FBtr0070603	72	31	F	0
 input1.bam	FBtr0070603	72	32	F	1
-input1.bam	FBtr0070603	72	33	F	0
 input1.bam	FBtr0070603	72	34	F	3
-input1.bam	FBtr0070603	72	35	F	0
-input1.bam	FBtr0070603	72	36	F	0
-input1.bam	FBtr0070603	72	37	F	0
 input1.bam	FBtr0070603	72	38	F	1
-input1.bam	FBtr0070603	72	39	F	0
-input1.bam	FBtr0070603	72	40	F	0
-input1.bam	FBtr0070603	72	41	F	0
 input1.bam	FBtr0070603	72	42	F	1
-input1.bam	FBtr0070603	72	43	F	0
-input1.bam	FBtr0070603	72	44	F	0
-input1.bam	FBtr0070603	72	45	F	0
-input1.bam	FBtr0070603	72	46	F	0
-input1.bam	FBtr0070603	72	47	F	0
-input1.bam	FBtr0070603	72	48	F	0
-input1.bam	FBtr0070603	72	49	F	0
-input1.bam	FBtr0070603	72	50	F	0
 input1.bam	FBtr0070603	72	51	F	1
-input1.bam	FBtr0070603	72	52	F	0
-input1.bam	FBtr0070603	72	53	F	0
-input1.bam	FBtr0070603	72	54	F	0
-input1.bam	FBtr0070603	72	55	F	0
 input1.bam	FBtr0070603	72	56	F	1
-input1.bam	FBtr0070603	72	57	F	0
-input1.bam	FBtr0070603	72	58	F	0
-input1.bam	FBtr0070603	72	59	F	0
-input1.bam	FBtr0070603	72	60	F	0
-input1.bam	FBtr0070603	72	61	F	0
-input1.bam	FBtr0070603	72	62	F	0
-input1.bam	FBtr0070603	72	63	F	0
-input1.bam	FBtr0070603	72	64	F	0
-input1.bam	FBtr0070603	72	65	F	0
-input1.bam	FBtr0070603	72	66	F	0
-input1.bam	FBtr0070603	72	67	F	0
-input1.bam	FBtr0070603	72	68	F	0
-input1.bam	FBtr0070603	72	69	F	0
-input1.bam	FBtr0070603	72	70	F	0
-input1.bam	FBtr0070603	72	71	F	0
 input1.bam	FBtr0070603	72	72	F	0
 input1.bam	FBtr0070604	72	1	F	1
-input1.bam	FBtr0070604	72	2	F	0
-input1.bam	FBtr0070604	72	3	F	0
-input1.bam	FBtr0070604	72	4	F	0
-input1.bam	FBtr0070604	72	5	F	0
-input1.bam	FBtr0070604	72	6	F	0
-input1.bam	FBtr0070604	72	7	F	0
-input1.bam	FBtr0070604	72	8	F	0
-input1.bam	FBtr0070604	72	9	F	0
-input1.bam	FBtr0070604	72	10	F	0
-input1.bam	FBtr0070604	72	11	F	0
-input1.bam	FBtr0070604	72	12	F	0
-input1.bam	FBtr0070604	72	13	F	0
-input1.bam	FBtr0070604	72	14	F	0
-input1.bam	FBtr0070604	72	15	F	0
 input1.bam	FBtr0070604	72	18	F	1
-input1.bam	FBtr0070604	72	19	F	0
-input1.bam	FBtr0070604	72	20	F	0
-input1.bam	FBtr0070604	72	21	F	0
 input1.bam	FBtr0070604	72	22	F	1
-input1.bam	FBtr0070604	72	23	F	0
-input1.bam	FBtr0070604	72	24	F	0
-input1.bam	FBtr0070604	72	25	F	0
-input1.bam	FBtr0070604	72	26	F	0
-input1.bam	FBtr0070604	72	27	F	0
-input1.bam	FBtr0070604	72	28	F	0
-input1.bam	FBtr0070604	72	29	F	0
 input1.bam	FBtr0070604	72	30	F	2
 input1.bam	FBtr0070604	72	31	F	10
 input1.bam	FBtr0070604	72	32	F	24
-input1.bam	FBtr0070604	72	33	F	0
-input1.bam	FBtr0070604	72	34	F	0
-input1.bam	FBtr0070604	72	35	F	0
-input1.bam	FBtr0070604	72	36	F	0
-input1.bam	FBtr0070604	72	37	F	0
-input1.bam	FBtr0070604	72	38	F	0
-input1.bam	FBtr0070604	72	39	F	0
-input1.bam	FBtr0070604	72	40	F	0
-input1.bam	FBtr0070604	72	41	F	0
-input1.bam	FBtr0070604	72	42	F	0
-input1.bam	FBtr0070604	72	43	F	0
-input1.bam	FBtr0070604	72	44	F	0
-input1.bam	FBtr0070604	72	45	F	0
-input1.bam	FBtr0070604	72	46	F	0
-input1.bam	FBtr0070604	72	47	F	0
-input1.bam	FBtr0070604	72	48	F	0
-input1.bam	FBtr0070604	72	49	F	0
-input1.bam	FBtr0070604	72	50	F	0
-input1.bam	FBtr0070604	72	51	F	0
-input1.bam	FBtr0070604	72	52	F	0
-input1.bam	FBtr0070604	72	53	F	0
 input1.bam	FBtr0070604	72	57	F	1
-input1.bam	FBtr0070604	72	58	F	0
-input1.bam	FBtr0070604	72	59	F	0
-input1.bam	FBtr0070604	72	60	F	0
-input1.bam	FBtr0070604	72	61	F	0
-input1.bam	FBtr0070604	72	62	F	0
-input1.bam	FBtr0070604	72	63	F	0
-input1.bam	FBtr0070604	72	64	F	0
-input1.bam	FBtr0070604	72	65	F	0
-input1.bam	FBtr0070604	72	66	F	0
-input1.bam	FBtr0070604	72	67	F	0
-input1.bam	FBtr0070604	72	68	F	0
-input1.bam	FBtr0070604	72	69	F	0
-input1.bam	FBtr0070604	72	70	F	0
-input1.bam	FBtr0070604	72	71	F	0
 input1.bam	FBtr0070604	72	72	F	0
 input1.bam	FBtr0070911	73	1	F	0
 input1.bam	FBtr0070911	73	15	F	1
-input1.bam	FBtr0070911	73	16	F	0
-input1.bam	FBtr0070911	73	17	F	0
-input1.bam	FBtr0070911	73	18	F	0
-input1.bam	FBtr0070911	73	19	F	0
-input1.bam	FBtr0070911	73	20	F	0
-input1.bam	FBtr0070911	73	21	F	0
-input1.bam	FBtr0070911	73	22	F	0
-input1.bam	FBtr0070911	73	23	F	0
-input1.bam	FBtr0070911	73	24	F	0
-input1.bam	FBtr0070911	73	25	F	0
-input1.bam	FBtr0070911	73	26	F	0
-input1.bam	FBtr0070911	73	27	F	0
-input1.bam	FBtr0070911	73	28	F	0
-input1.bam	FBtr0070911	73	29	F	0
-input1.bam	FBtr0070911	73	30	F	0
-input1.bam	FBtr0070911	73	31	F	0
-input1.bam	FBtr0070911	73	32	F	0
-input1.bam	FBtr0070911	73	33	F	0
-input1.bam	FBtr0070911	73	34	F	0
-input1.bam	FBtr0070911	73	35	F	0
 input1.bam	FBtr0070911	73	38	F	1
-input1.bam	FBtr0070911	73	39	F	0
-input1.bam	FBtr0070911	73	40	F	0
-input1.bam	FBtr0070911	73	41	F	0
-input1.bam	FBtr0070911	73	42	F	0
-input1.bam	FBtr0070911	73	43	F	0
-input1.bam	FBtr0070911	73	44	F	0
-input1.bam	FBtr0070911	73	45	F	0
-input1.bam	FBtr0070911	73	46	F	0
-input1.bam	FBtr0070911	73	47	F	0
-input1.bam	FBtr0070911	73	48	F	0
-input1.bam	FBtr0070911	73	49	F	0
-input1.bam	FBtr0070911	73	50	F	0
-input1.bam	FBtr0070911	73	51	F	0
-input1.bam	FBtr0070911	73	52	F	0
 input1.bam	FBtr0070911	73	73	F	0
 input1.bam	FBtr0078490	72	1	F	0
 input1.bam	FBtr0078490	72	13	F	2
-input1.bam	FBtr0078490	72	14	F	0
-input1.bam	FBtr0078490	72	15	F	0
-input1.bam	FBtr0078490	72	16	F	0
 input1.bam	FBtr0078490	72	17	F	1
 input1.bam	FBtr0078490	72	18	F	1
-input1.bam	FBtr0078490	72	19	F	0
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-input2.bam	FBtr0080660	72	67	F	0
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 input2.bam	FBtr0080663	71	11	F	1
 input2.bam	FBtr0080663	71	12	F	4
 input2.bam	FBtr0080663	71	13	F	4
@@ -2987,62 +573,14 @@
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 input2.bam	FBtr0080663	71	21	F	13
 input2.bam	FBtr0080663	71	22	F	3
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 input2.bam	FBtr0080663	71	52	F	2
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@@ -3056,13 +594,7 @@
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 input2.bam	FBtr0080664	71	31	F	3
 input2.bam	FBtr0080664	71	32	F	39
@@ -3073,37 +605,13 @@
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 input2.bam	FBtr0080664	71	62	R	1
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 input2.bam	FBtr0080664	71	71	F	0
 input2.bam	FBtr0080664	71	71	R	1
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