diff test-data/paired_2.fa @ 3:4d9682bd3a6b draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 96ed5824190aff281cc3aa47dc60fc66aac41db3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired_2.fa	Sat Sep 02 06:35:15 2017 -0400
@@ -0,0 +1,370 @@
+>FBgn0000004_17.6|5844|R|21|n=1
+TTTTCGTCAAGTGTGCTAAAT
+>FBgn0000004_17.6|5855|F|23|n=1
+TTGACGAAAATGATCGAGTGGAT
+>FBgn0000005_297|1347|F|21|n=1
+TTGCACAAAATGAGGGAATTT
+>FBgn0000005_297|1334|R|23|n=1
+TTTTGCGCAATGGTAATTAAGGA
+>FBgn0000007_1731|4545|R|20|n=1
+TTGAGAGCAAAGGCCGAATG
+>FBgn0000007_1731|4555|F|24|n=1
+TTGCTCTCAATGCGCTGAGTTTGG
+>FBgn0000155_roo|2682|R|20|n=2
+TTTTTACCAAACGGATGCCT
+>FBgn0000155_roo|2692|F|24|n=1
+TTGGTAAAAAATGTATAAGTGAGC
+>FBgn0000155_roo|2692|F|27|n=1
+TTGGTAAAAAATGTATAAGTGAGCAGC
+>FBgn0000155_roo|3241|F|20|n=1
+TTGGGCAAAAAACTGATTTC
+>FBgn0000155_roo|3225|R|26|n=1
+TTTTGCCCAAGGAGACCGTCTATTTT
+>FBgn0000155_roo|3226|R|25|n=1
+TTTTGCCCAAGGAGACCGTCTATTT
+>FBgn0000155_roo|3227|R|24|n=2
+TTTTGCCCAAGGAGACCGTCTATT
+>FBgn0000155_roo|3228|R|23|n=1
+TTTTGCCCAAGGAGACCGTCTAT
+>FBgn0000155_roo|3229|R|22|n=2
+TTTTGCCCAAGGAGACCGTCTA
+>FBgn0000155_roo|3241|F|24|n=1
+TTGGGCAAAAAACTGATTTCGGGT
+>FBgn0000155_roo|3241|F|27|n=1
+TTGGGCAAAAAACTGATTTCGGGTGGA
+>FBgn0000155_roo|3241|F|28|n=1
+TTGGGCAAAAAACTGATTTCGGGTGGAT
+>FBgn0000155_roo|8644|R|21|n=1
+TTCTGCCAAAGGGCCAGCAAG
+>FBgn0000155_roo|8655|F|25|n=1
+TTTGGCAGAATGTTCACACATGAAA
+>FBgn0000349_copia|658|R|22|n=1
+TTCTCAAGAATCTGACGCGCCG
+>FBgn0000349_copia|670|F|25|n=1
+TTCTTGAGAATTTGGACGCCGTTTA
+>FBgn0000349_copia|4628|F|20|n=1
+TTTGCTGCAAGACGACCAAT
+>FBgn0000349_copia|4614|R|24|n=1
+TTGCAGCAAACCCAATTTGTCTCG
+>FBgn0000652_F-element|1564|F|20|n=2
+TTTTCTCGAAAGCAGCAAGT
+>FBgn0000652_F-element|1546|R|28|n=1
+TTCGAGAAAATTACTTCAGGATTTGTCT
+>FBgn0000652_F-element|1546|R|28|n=1
+TTCGGGAAAATTACTTCAGGATTTGTCT
+>FBgn0000652_F-element|1547|R|27|n=74
+TTCGAGAAAATTACTTCAGGATTTGTC
+>FBgn0000652_F-element|1547|R|27|n=1
+TTCGGGAAAATTACTTCAGGATTTGTC
+>FBgn0000652_F-element|1547|R|27|n=1
+TTTGAGAAAATTACTTCAGGATTTGTC
+>FBgn0000652_F-element|1548|R|26|n=3
+TTCGAGAAAATTACTTCAGGATTTGT
+>FBgn0000652_F-element|1549|R|25|n=22
+TTCGAGAAAATTACTTCAGGATTTG
+>FBgn0000652_F-element|1549|R|25|n=1
+TTCGGGAAAATTACTTCAGGATTTG
+>FBgn0000652_F-element|1550|R|24|n=2
+TTCGAGAAAATTACTTCAGGATTT
+>FBgn0000652_F-element|1551|R|23|n=7
+TTCGAGAAAATTACTTCAGGATT
+>FBgn0000652_F-element|1554|R|20|n=1
+TTCGAGAAAATTACTTCAGG
+>FBgn0000652_F-element|1564|F|23|n=2
+TTTTCTCGAAAGCAGCAAGTTTC
+>FBgn0000652_F-element|1564|F|24|n=2
+TTTTCTCGAAAGCAGCAAGTTTCG
+>FBgn0000652_F-element|1564|F|23|n=2
+TTTTCTCGAAAGCAGCTAGTTTC
+>FBgn0000652_F-element|1564|F|24|n=5
+TTTTCTCGAAAGCAGCTAGTTTCG
+>FBgn0000652_F-element|1564|F|25|n=1
+TTTTCTCGAAAGCAGCTAGTTTCGC
+>FBgn0000652_F-element|2248|F|20|n=1
+TTTCTTCCAAGCACTAGGGC
+>FBgn0000652_F-element|2231|R|27|n=1
+TTGGAAGAAATCCAGGAATTGAGCTTC
+>FBgn0000652_F-element|2233|R|25|n=5
+TTGGAAGAAATCCAGGAATTGAGCT
+>FBgn0000652_F-element|2471|R|21|n=2
+TTTAACCAAACTGCGGGAAAT
+>FBgn0000652_F-element|2482|F|23|n=2
+TTTGGTTAAAGCTGAATGTCTGC
+>FBgn0000652_F-element|2482|F|24|n=2
+TTTGGTTAAAGCTGAATGTCTGCC
+>FBgn0000652_F-element|2482|F|26|n=3
+TTTGGTTAAAGCTGAATGTCTGCCGG
+>FBgn0000652_F-element|2482|F|27|n=1
+TTTGGTTAAAGCTGAATGTCTGCCGGA
+>FBgn0000652_F-element|3524|F|21|n=2
+TTTCGCGAAAGCCACGGAACC
+>FBgn0000652_F-element|3507|R|27|n=1
+TTTCGCGAAATCCAAATTGGTGGGCTG
+>FBgn0000652_F-element|3509|R|25|n=6
+TTTCGCGAAATCCAAATTGGTGGGC
+>FBgn0000652_F-element|3510|R|24|n=1
+TTTCGCGAAATCCAAATTGGTGGG
+>FBgn0000652_F-element|3513|R|21|n=3
+TTTCGCGAAATCCAAATTGGT
+>FBgn0000652_F-element|3524|F|23|n=1
+TTTCGCGAAAGCCACGGAACCAT
+>FBgn0000652_F-element|3524|F|27|n=1
+TTTCGCGAAAGCCACGGAACCATTGAA
+>FBgn0000652_F-element|3524|F|24|n=1
+TTTCGCGAAAGCCATGGAACCATT
+>FBgn0000652_F-element|3524|F|26|n=1
+TTTCGCGAAAGCCATGGAACCATTGA
+>FBgn0002697_mdg1|4301|R|22|n=1
+TTCTTTGGAAAGAATTTGGGGC
+>FBgn0002697_mdg1|4313|F|25|n=1
+TTCCAAAGAATGATGACCCTTGCAT
+>FBgn0003007_opus|5558|F|21|n=1
+TTCCTAGAAATTTATCGTTGC
+>FBgn0003007_opus|5540|R|28|n=1
+TTTCTAGGAACGTAGAATGGAATCTCTC
+>FBgn0003007_opus|5540|R|28|n=1
+TTTCTAGGAACGTAGAGTGGAATCTCTC
+>FBgn0003007_opus|5542|R|26|n=1
+TTTCTAGGAACGTAGAATGGAATCTC
+>FBgn0003007_opus|5542|R|26|n=2
+TTTCTAGGAACGTAGAGTGGAATCTC
+>FBgn0003007_opus|5543|R|25|n=1
+TTTCTAGGAACGTAGAGTGGAATCT
+>FBgn0003007_opus|5544|R|24|n=7
+TTTCTAGGAACGTAGAGTGGAATC
+>FBgn0003122_pogo|1819|F|22|n=1
+TTCTATGGAAGACAAGCTGTTT
+>FBgn0003122_pogo|1804|R|25|n=1
+TTCCATAGAATTCAAGTTTTGCAAA
+>FBgn0003122_pogo|1806|R|23|n=1
+TTCCATAGAATTCAAGTTTTGCA
+>FBgn0003908_R1A1-element|4690|F|22|n=1
+TTGGCGAAAACTAGATCTTCGA
+>FBgn0003908_R1A1-element|4671|R|29|n=1
+TTTTCGCCAAGGCGCTGCACTCCAAGTCC
+>FBgn0003908_R1A1-element|4672|R|28|n=8
+TTTTCGCCAAGGCGCTGCACTCCAAGTC
+>FBgn0003908_R1A1-element|4673|R|27|n=1
+TTTTCGCCAAGGCGCTGCACCCCAAGT
+>FBgn0003908_R1A1-element|4673|R|27|n=4
+TTTTCGCCAAGGCGCTGCACTCCAAGT
+>FBgn0003908_R1A1-element|4674|R|26|n=1
+TTTTCGCCAAGGCGCTGCACCCCAAG
+>FBgn0003908_R1A1-element|4674|R|26|n=29
+TTTTCGCCAAGGCGCTGCACTCCAAG
+>FBgn0003908_R1A1-element|4674|R|26|n=2
+TTTTCGCCAAGGCGCTGCACTTCAAG
+>FBgn0003908_R1A1-element|4674|R|26|n=1
+TTTTCGTCAAGGCGCTGCACTCCAAG
+>FBgn0003908_R1A1-element|4675|R|25|n=1
+TTTTCGCCAAGGCGCTGCACCCCAA
+>FBgn0003908_R1A1-element|4675|R|25|n=10
+TTTTCGCCAAGGCGCTGCACTCCAA
+>FBgn0003908_R1A1-element|4675|R|25|n=1
+TTTTCGCCAAGGCGCTGCACTTCAA
+>FBgn0003908_R1A1-element|4676|R|24|n=21
+TTTTCGCCAAGGCGCTGCACTCCA
+>FBgn0003908_R1A1-element|4676|R|24|n=2
+TTTTCGCCAAGGCGCTGCACTTCA
+>FBgn0003908_R1A1-element|4677|R|23|n=12
+TTTTCGCCAAGGCGCTGCACTCC
+>FBgn0003908_R1A1-element|4678|R|22|n=18
+TTTTCGCCAAGGCGCTGCACTC
+>FBgn0003908_R1A1-element|4690|F|23|n=8
+TTGGCGAAAACTGGATCTTCGAG
+>FBgn0003908_R1A1-element|4690|F|24|n=9
+TTGGCGAAAACTGGATCTTCGAGA
+>FBgn0003908_R1A1-element|4690|F|25|n=11
+TTGGCGAAAACTGGATCTTCGAGAG
+>FBgn0003908_R1A1-element|4690|F|26|n=6
+TTGGCGAAAACTGGATCTTCGAGAGA
+>FBgn0003908_R1A1-element|4690|F|27|n=20
+TTGGCGAAAACTGGATCTTCGAGAGAA
+>FBgn0003908_R1A1-element|4690|F|28|n=4
+TTGGCGAAAACTGGATCTTCGAGAGAAT
+>FBgn0003908_R1A1-element|4690|F|24|n=7
+TTGGCGAAAACTGGATCTTCGAGG
+>FBgn0003908_R1A1-element|4690|F|25|n=12
+TTGGCGAAAACTGGATCTTCGAGGG
+>FBgn0003908_R1A1-element|4690|F|26|n=2
+TTGGCGAAAACTGGATCTTCGAGGGA
+>FBgn0003908_R1A1-element|4690|F|27|n=9
+TTGGCGAAAACTGGATCTTCGAGGGAA
+>FBgn0003908_R1A1-element|4690|F|28|n=1
+TTGGCGAAAACTGGATCTTCGAGGGAAT
+>FBgn0005673_1360|773|R|22|n=1
+TTTTCGCAATCATTCCATCCTG
+>FBgn0005673_1360|785|F|26|n=6
+TTTGCGAAAAATTGTTTGCTCAGAGC
+>FBgn0005673_1360|3197|R|22|n=1
+TTTGCTAGAAGACGATTTTCGG
+>FBgn0005673_1360|3209|F|23|n=1
+TTCTAGCACAACACGCACACATA
+>FBgn0005673_1360|3209|F|26|n=1
+TTCTAGCACAACACGCACACATATAC
+>FBgn0005673_1360|3209|F|27|n=1
+TTCTAGCACAACACGCACACATATACG
+>FBgn0010302_Burdock|3390|R|21|n=1
+TTTCATCGAAAGAAATTGGTA
+>FBgn0010302_Burdock|3401|F|25|n=2
+TTCGATGAAAGACAATGTTCTGCTT
+>FBgn0014947_flea|818|F|22|n=1
+TTCTAGAGAACGAAAGCGAGGA
+>FBgn0014947_flea|801|R|27|n=4
+TTCTCTAGAATTGCTTGTATTTGGTCG
+>FBgn0014947_flea|802|R|26|n=11
+TTCTCTAGAATTGCTTGTATTTGGTC
+>FBgn0014947_flea|803|R|25|n=12
+TTCTCTAGAATTGCTTGTATTTGGT
+>FBgn0014947_flea|804|R|24|n=2
+TTCTCTAGAATTGCTTGTATTTGG
+>FBgn0014947_flea|805|R|23|n=1
+TTCTCTAGAATTGCTTGTATTTG
+>FBgn0014947_flea|1182|F|22|n=1
+TTTCTTAGAATCTGAATGTGTC
+>FBgn0014947_flea|1164|R|28|n=2
+TTCTAAGAAAAGTTCTGCTGATCCAATC
+>FBgn0014947_flea|1166|R|26|n=2
+TTCTAAGAAAAGTTCTGCTGATCCAA
+>FBgn0014947_flea|1167|R|25|n=1
+TTCTAAGAAAAGTTCTGCTGATCCA
+>FBgn0014947_flea|1168|R|24|n=1
+TTCTAAGAAAAGTTCTGCTGATCC
+>FBgn0014947_flea|1169|R|23|n=1
+TTCTAAGAAAAGTTCTGCTGATC
+>FBgn0014947_flea|2754|R|21|n=1
+TTTAGACCAAATTCTGCAGCT
+>FBgn0014947_flea|2765|F|24|n=4
+TTGGTCTAAAAATAAAATGGAAGA
+>FBgn0014947_flea|2765|F|25|n=1
+TTGGTCTAAAAATAAAATGGAAGAA
+>FBgn0014947_flea|2765|F|26|n=1
+TTGGTCTAAAAATAAAATGGAAGAAG
+>FBgn0014947_flea|2765|F|28|n=1
+TTGGTCTAAAAATAAAATGGAAGAAGTG
+>FBgn0015945_GATE|3158|F|20|n=3
+TTCGTTCCAAATGAGCAAGC
+>FBgn0015945_GATE|3140|R|28|n=9
+TTGGAACGAAATTGGCCTGATTAGCGGA
+>FBgn0015945_GATE|3141|R|27|n=4
+TTGGAACGAAATTGGCCTGATTAGCGG
+>FBgn0015945_GATE|3142|R|26|n=17
+TTGGAACGAAATTGGCCTGATTAGCG
+>FBgn0015945_GATE|3143|R|25|n=86
+TTGGAACGAAATTGGCCTGATTAGC
+>FBgn0015945_GATE|3144|R|24|n=17
+TTGGAACGAAATTGGCCTGATTAG
+>FBgn0015945_GATE|6234|R|22|n=1
+TTGAAGGAAATCGCGGGAAAGC
+>FBgn0015945_GATE|6246|F|25|n=1
+TTTCCTTCAAGCCGTAAAAGAGTCG
+>FBgn0015945_GATE|6246|F|26|n=1
+TTTCCTTCAAGCCGTAAAAGAGTCGG
+>FBgn0042682_Rt1b|1075|R|21|n=1
+TTCTTGGCGACAGATGCGTAG
+>FBgn0042682_Rt1b|1086|F|23|n=1
+TTGCCAAGAATGCTAGCACGGGT
+>FBgn0042682_Rt1b|2920|F|22|n=1
+TTGTTACCAAAAAGCTAAGGAG
+>FBgn0042682_Rt1b|2902|R|28|n=1
+TTGGTAACAAGCTTGTAGGCGAGGCCCC
+>FBgn0042682_Rt1b|2903|R|27|n=1
+TTGGTAACAAGCTTGTAGGCGAGGCCC
+>FBgn0042682_Rt1b|2904|R|26|n=2
+TTGGTAACAAGCTTGTAGGCGAGGCC
+>FBgn0042682_Rt1b|2904|R|26|n=1
+TTGGTAACAAGCTTGTAGGCGAGTCC
+>FBgn0042682_Rt1b|2905|R|25|n=2
+TTGGTAACAAGCTTGTAGGCGAGGC
+>FBgn0042682_Rt1b|2905|R|25|n=1
+TTGGTAACAAGCTTGTAGGCGAGGT
+>FBgn0042682_Rt1b|2906|R|24|n=25
+TTGGTAACAAGCTTGTAGGCGAGG
+>FBgn0042682_Rt1b|2907|R|23|n=1
+TTGGTAACAAGCTTGGAGGCGAG
+>FBgn0042682_Rt1b|2907|R|23|n=15
+TTGGTAACAAGCTTGTAGGCGAG
+>FBgn0042682_Rt1b|2908|R|22|n=1
+TTGGTAACAAGCTTGTAGGCGA
+>FBgn0042682_Rt1b|2920|F|23|n=1
+TTGTTACCAAAAAGCTAAGGAGG
+>FBgn0042682_Rt1b|2920|F|25|n=1
+TTGTTACCAAAAAGCTAAGGAGGAG
+>FBgn0042682_Rt1b|2920|F|26|n=1
+TTGTTACCAAAAAGCTAAGGAGGAGA
+>FBgn0042682_Rt1b|2920|F|27|n=1
+TTGTTACCAAAAAGCTAAGGAGGAGAG
+>FBgn0042682_Rt1b|2920|F|23|n=1
+TTGTTACCAACAAGCTAAGGAGG
+>FBgn0042682_Rt1b|2920|F|24|n=2
+TTGTTACCAACAAGCTAAGGAGGA
+>FBgn0042682_Rt1b|4364|R|22|n=1
+TTGCCTGGAAGCGCCACTCCGC
+>FBgn0042682_Rt1b|4376|F|24|n=1
+TTCCAGGCAAGAGGCACACGAGTG
+>FBgn0042682_Rt1b|4376|F|26|n=1
+TTCCAGGCAAGAGGCACACGAGTGGC
+>FBgn0062343_Dm88|4210|R|21|n=1
+TTGGTTAGAACATCTGCCATC
+>FBgn0062343_Dm88|4221|F|24|n=1
+TTCTAACCAAGAATTTGAATAGAT
+>FBgn0063427_invader4|707|F|22|n=2
+TTCGTAGGAATGGAGACGTCGG
+>FBgn0063427_invader4|691|R|26|n=15
+TTCCTACGAATCGCTGTATGAACAGT
+>FBgn0063428_invader3|440|F|22|n=2
+TTCCCCAGAAACGCGTGGCGAT
+>FBgn0063428_invader3|425|R|25|n=1
+TTCTGGGGAAATGGCCTGCAGACGC
+>FBgn0063428_invader3|427|R|23|n=1
+TTCTGGGGAAATGGCCTGCAGAC
+>FBgn0063430_invader1|2082|R|20|n=1
+TTTTATCGAACCAATAGAAC
+>FBgn0063430_invader1|2092|F|24|n=1
+TTCGATAAAATGTCTAAGTATGTT
+>FBgn0063430_invader1|2092|F|26|n=1
+TTCGATAAAATGTCTAAGTATGTTCG
+>FBgn0063433_gypsy4|3058|F|22|n=1
+TTCTTCAAAAAGAGCGTGGAAT
+>FBgn0063433_gypsy4|3040|R|28|n=1
+TTTTGAAGAACTTGGATTTTTCTTGAGA
+>FBgn0063433_gypsy4|3044|R|24|n=1
+TTTTGAAGAACTTGGATTTTTCTT
+>FBgn0063440_baggins|5170|F|21|n=1
+TTGCACAAAATTGGCATTGCA
+>FBgn0063440_baggins|5154|R|26|n=1
+TTTTGTGCAAATGGCTGTGAAGTCGG
+>FBgn0063919_Max-element|3887|R|21|n=2
+TTGCTGAGAAGCGTGTTGAGC
+>FBgn0063919_Max-element|3898|F|23|n=1
+TTCTCAGCAAGTTCTGGGAGGTG
+>FBgn0063919_Max-element|3898|F|24|n=2
+TTCTCAGCAAGTTCTGGGAGGTGG
+>FBgn0063919_Max-element|3898|F|25|n=1
+TTCTCAGCAAGTTCTGGGAGGTGGA
+>FBgn0063919_Max-element|3898|F|24|n=1
+TTCTCAGCAAGTTCTGGGAGGTGT
+>FBgn0067385_invader6|3024|F|21|n=1
+TTGACTAGAATGACTTAGACT
+>FBgn0067385_invader6|3007|R|27|n=4
+TTCTAGTCAAAGTCGAAGGACTGCATA
+>FBgn0067385_invader6|3008|R|26|n=3
+TTCTAGTCAAAGTCGAAGGACTGCAT
+>FBgn0067385_invader6|3009|R|25|n=5
+TTCTAGTCAAAGTCGAAGGACTGCA
+>FBgn0067385_invader6|3010|R|24|n=4
+TTCTAGTCAAAGTCGAAGGACTGC
+>FBgn0067385_invader6|3011|R|23|n=1
+TTCTAGTCAAAGTCGAAGGACTG
+>FBgn0067385_invader6|3014|R|20|n=1
+TTCTAGTCAAAGTCGAAGGA
+>FBgn0067385_invader6|3024|F|26|n=1
+TTGACTAGAATGACTTAGACTTAGAA
+>FBgn0067624_BS3|1016|R|20|n=1
+TTGATGCCAATGTTCCAACG
+>FBgn0067624_BS3|1026|F|26|n=1
+TTGGCATCAATGGTGACAAATCAGCG
+>FBgn0067624_BS3|1026|F|24|n=1
+TTGGCATCAATGGTGACAAATCTG
+>FBgn0067624_BS3|1026|F|25|n=1
+TTGGCATCAATGGTGACAAATCTGC