Mercurial > repos > artbio > small_rna_signatures
diff test-data/paired_2.fa @ 3:4d9682bd3a6b draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_signatures commit 96ed5824190aff281cc3aa47dc60fc66aac41db3
author | artbio |
---|---|
date | Sat, 02 Sep 2017 06:35:15 -0400 |
parents | |
children | a7fd04208764 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/paired_2.fa Sat Sep 02 06:35:15 2017 -0400 @@ -0,0 +1,370 @@ +>FBgn0000004_17.6|5844|R|21|n=1 +TTTTCGTCAAGTGTGCTAAAT +>FBgn0000004_17.6|5855|F|23|n=1 +TTGACGAAAATGATCGAGTGGAT +>FBgn0000005_297|1347|F|21|n=1 +TTGCACAAAATGAGGGAATTT +>FBgn0000005_297|1334|R|23|n=1 +TTTTGCGCAATGGTAATTAAGGA +>FBgn0000007_1731|4545|R|20|n=1 +TTGAGAGCAAAGGCCGAATG +>FBgn0000007_1731|4555|F|24|n=1 +TTGCTCTCAATGCGCTGAGTTTGG +>FBgn0000155_roo|2682|R|20|n=2 +TTTTTACCAAACGGATGCCT +>FBgn0000155_roo|2692|F|24|n=1 +TTGGTAAAAAATGTATAAGTGAGC +>FBgn0000155_roo|2692|F|27|n=1 +TTGGTAAAAAATGTATAAGTGAGCAGC +>FBgn0000155_roo|3241|F|20|n=1 +TTGGGCAAAAAACTGATTTC +>FBgn0000155_roo|3225|R|26|n=1 +TTTTGCCCAAGGAGACCGTCTATTTT +>FBgn0000155_roo|3226|R|25|n=1 +TTTTGCCCAAGGAGACCGTCTATTT +>FBgn0000155_roo|3227|R|24|n=2 +TTTTGCCCAAGGAGACCGTCTATT +>FBgn0000155_roo|3228|R|23|n=1 +TTTTGCCCAAGGAGACCGTCTAT +>FBgn0000155_roo|3229|R|22|n=2 +TTTTGCCCAAGGAGACCGTCTA +>FBgn0000155_roo|3241|F|24|n=1 +TTGGGCAAAAAACTGATTTCGGGT +>FBgn0000155_roo|3241|F|27|n=1 +TTGGGCAAAAAACTGATTTCGGGTGGA +>FBgn0000155_roo|3241|F|28|n=1 +TTGGGCAAAAAACTGATTTCGGGTGGAT +>FBgn0000155_roo|8644|R|21|n=1 +TTCTGCCAAAGGGCCAGCAAG +>FBgn0000155_roo|8655|F|25|n=1 +TTTGGCAGAATGTTCACACATGAAA +>FBgn0000349_copia|658|R|22|n=1 +TTCTCAAGAATCTGACGCGCCG +>FBgn0000349_copia|670|F|25|n=1 +TTCTTGAGAATTTGGACGCCGTTTA +>FBgn0000349_copia|4628|F|20|n=1 +TTTGCTGCAAGACGACCAAT +>FBgn0000349_copia|4614|R|24|n=1 +TTGCAGCAAACCCAATTTGTCTCG +>FBgn0000652_F-element|1564|F|20|n=2 +TTTTCTCGAAAGCAGCAAGT +>FBgn0000652_F-element|1546|R|28|n=1 +TTCGAGAAAATTACTTCAGGATTTGTCT +>FBgn0000652_F-element|1546|R|28|n=1 +TTCGGGAAAATTACTTCAGGATTTGTCT +>FBgn0000652_F-element|1547|R|27|n=74 +TTCGAGAAAATTACTTCAGGATTTGTC +>FBgn0000652_F-element|1547|R|27|n=1 +TTCGGGAAAATTACTTCAGGATTTGTC +>FBgn0000652_F-element|1547|R|27|n=1 +TTTGAGAAAATTACTTCAGGATTTGTC +>FBgn0000652_F-element|1548|R|26|n=3 +TTCGAGAAAATTACTTCAGGATTTGT +>FBgn0000652_F-element|1549|R|25|n=22 +TTCGAGAAAATTACTTCAGGATTTG +>FBgn0000652_F-element|1549|R|25|n=1 +TTCGGGAAAATTACTTCAGGATTTG +>FBgn0000652_F-element|1550|R|24|n=2 +TTCGAGAAAATTACTTCAGGATTT +>FBgn0000652_F-element|1551|R|23|n=7 +TTCGAGAAAATTACTTCAGGATT +>FBgn0000652_F-element|1554|R|20|n=1 +TTCGAGAAAATTACTTCAGG +>FBgn0000652_F-element|1564|F|23|n=2 +TTTTCTCGAAAGCAGCAAGTTTC +>FBgn0000652_F-element|1564|F|24|n=2 +TTTTCTCGAAAGCAGCAAGTTTCG +>FBgn0000652_F-element|1564|F|23|n=2 +TTTTCTCGAAAGCAGCTAGTTTC +>FBgn0000652_F-element|1564|F|24|n=5 +TTTTCTCGAAAGCAGCTAGTTTCG +>FBgn0000652_F-element|1564|F|25|n=1 +TTTTCTCGAAAGCAGCTAGTTTCGC +>FBgn0000652_F-element|2248|F|20|n=1 +TTTCTTCCAAGCACTAGGGC +>FBgn0000652_F-element|2231|R|27|n=1 +TTGGAAGAAATCCAGGAATTGAGCTTC +>FBgn0000652_F-element|2233|R|25|n=5 +TTGGAAGAAATCCAGGAATTGAGCT +>FBgn0000652_F-element|2471|R|21|n=2 +TTTAACCAAACTGCGGGAAAT +>FBgn0000652_F-element|2482|F|23|n=2 +TTTGGTTAAAGCTGAATGTCTGC +>FBgn0000652_F-element|2482|F|24|n=2 +TTTGGTTAAAGCTGAATGTCTGCC +>FBgn0000652_F-element|2482|F|26|n=3 +TTTGGTTAAAGCTGAATGTCTGCCGG +>FBgn0000652_F-element|2482|F|27|n=1 +TTTGGTTAAAGCTGAATGTCTGCCGGA +>FBgn0000652_F-element|3524|F|21|n=2 +TTTCGCGAAAGCCACGGAACC +>FBgn0000652_F-element|3507|R|27|n=1 +TTTCGCGAAATCCAAATTGGTGGGCTG +>FBgn0000652_F-element|3509|R|25|n=6 +TTTCGCGAAATCCAAATTGGTGGGC +>FBgn0000652_F-element|3510|R|24|n=1 +TTTCGCGAAATCCAAATTGGTGGG +>FBgn0000652_F-element|3513|R|21|n=3 +TTTCGCGAAATCCAAATTGGT +>FBgn0000652_F-element|3524|F|23|n=1 +TTTCGCGAAAGCCACGGAACCAT +>FBgn0000652_F-element|3524|F|27|n=1 +TTTCGCGAAAGCCACGGAACCATTGAA +>FBgn0000652_F-element|3524|F|24|n=1 +TTTCGCGAAAGCCATGGAACCATT +>FBgn0000652_F-element|3524|F|26|n=1 +TTTCGCGAAAGCCATGGAACCATTGA +>FBgn0002697_mdg1|4301|R|22|n=1 +TTCTTTGGAAAGAATTTGGGGC +>FBgn0002697_mdg1|4313|F|25|n=1 +TTCCAAAGAATGATGACCCTTGCAT +>FBgn0003007_opus|5558|F|21|n=1 +TTCCTAGAAATTTATCGTTGC +>FBgn0003007_opus|5540|R|28|n=1 +TTTCTAGGAACGTAGAATGGAATCTCTC +>FBgn0003007_opus|5540|R|28|n=1 +TTTCTAGGAACGTAGAGTGGAATCTCTC +>FBgn0003007_opus|5542|R|26|n=1 +TTTCTAGGAACGTAGAATGGAATCTC +>FBgn0003007_opus|5542|R|26|n=2 +TTTCTAGGAACGTAGAGTGGAATCTC +>FBgn0003007_opus|5543|R|25|n=1 +TTTCTAGGAACGTAGAGTGGAATCT +>FBgn0003007_opus|5544|R|24|n=7 +TTTCTAGGAACGTAGAGTGGAATC +>FBgn0003122_pogo|1819|F|22|n=1 +TTCTATGGAAGACAAGCTGTTT +>FBgn0003122_pogo|1804|R|25|n=1 +TTCCATAGAATTCAAGTTTTGCAAA +>FBgn0003122_pogo|1806|R|23|n=1 +TTCCATAGAATTCAAGTTTTGCA +>FBgn0003908_R1A1-element|4690|F|22|n=1 +TTGGCGAAAACTAGATCTTCGA +>FBgn0003908_R1A1-element|4671|R|29|n=1 +TTTTCGCCAAGGCGCTGCACTCCAAGTCC +>FBgn0003908_R1A1-element|4672|R|28|n=8 +TTTTCGCCAAGGCGCTGCACTCCAAGTC +>FBgn0003908_R1A1-element|4673|R|27|n=1 +TTTTCGCCAAGGCGCTGCACCCCAAGT +>FBgn0003908_R1A1-element|4673|R|27|n=4 +TTTTCGCCAAGGCGCTGCACTCCAAGT +>FBgn0003908_R1A1-element|4674|R|26|n=1 +TTTTCGCCAAGGCGCTGCACCCCAAG +>FBgn0003908_R1A1-element|4674|R|26|n=29 +TTTTCGCCAAGGCGCTGCACTCCAAG +>FBgn0003908_R1A1-element|4674|R|26|n=2 +TTTTCGCCAAGGCGCTGCACTTCAAG +>FBgn0003908_R1A1-element|4674|R|26|n=1 +TTTTCGTCAAGGCGCTGCACTCCAAG +>FBgn0003908_R1A1-element|4675|R|25|n=1 +TTTTCGCCAAGGCGCTGCACCCCAA +>FBgn0003908_R1A1-element|4675|R|25|n=10 +TTTTCGCCAAGGCGCTGCACTCCAA +>FBgn0003908_R1A1-element|4675|R|25|n=1 +TTTTCGCCAAGGCGCTGCACTTCAA +>FBgn0003908_R1A1-element|4676|R|24|n=21 +TTTTCGCCAAGGCGCTGCACTCCA +>FBgn0003908_R1A1-element|4676|R|24|n=2 +TTTTCGCCAAGGCGCTGCACTTCA +>FBgn0003908_R1A1-element|4677|R|23|n=12 +TTTTCGCCAAGGCGCTGCACTCC +>FBgn0003908_R1A1-element|4678|R|22|n=18 +TTTTCGCCAAGGCGCTGCACTC +>FBgn0003908_R1A1-element|4690|F|23|n=8 +TTGGCGAAAACTGGATCTTCGAG +>FBgn0003908_R1A1-element|4690|F|24|n=9 +TTGGCGAAAACTGGATCTTCGAGA +>FBgn0003908_R1A1-element|4690|F|25|n=11 +TTGGCGAAAACTGGATCTTCGAGAG +>FBgn0003908_R1A1-element|4690|F|26|n=6 +TTGGCGAAAACTGGATCTTCGAGAGA +>FBgn0003908_R1A1-element|4690|F|27|n=20 +TTGGCGAAAACTGGATCTTCGAGAGAA +>FBgn0003908_R1A1-element|4690|F|28|n=4 +TTGGCGAAAACTGGATCTTCGAGAGAAT +>FBgn0003908_R1A1-element|4690|F|24|n=7 +TTGGCGAAAACTGGATCTTCGAGG +>FBgn0003908_R1A1-element|4690|F|25|n=12 +TTGGCGAAAACTGGATCTTCGAGGG +>FBgn0003908_R1A1-element|4690|F|26|n=2 +TTGGCGAAAACTGGATCTTCGAGGGA +>FBgn0003908_R1A1-element|4690|F|27|n=9 +TTGGCGAAAACTGGATCTTCGAGGGAA +>FBgn0003908_R1A1-element|4690|F|28|n=1 +TTGGCGAAAACTGGATCTTCGAGGGAAT +>FBgn0005673_1360|773|R|22|n=1 +TTTTCGCAATCATTCCATCCTG +>FBgn0005673_1360|785|F|26|n=6 +TTTGCGAAAAATTGTTTGCTCAGAGC +>FBgn0005673_1360|3197|R|22|n=1 +TTTGCTAGAAGACGATTTTCGG +>FBgn0005673_1360|3209|F|23|n=1 +TTCTAGCACAACACGCACACATA +>FBgn0005673_1360|3209|F|26|n=1 +TTCTAGCACAACACGCACACATATAC +>FBgn0005673_1360|3209|F|27|n=1 +TTCTAGCACAACACGCACACATATACG +>FBgn0010302_Burdock|3390|R|21|n=1 +TTTCATCGAAAGAAATTGGTA +>FBgn0010302_Burdock|3401|F|25|n=2 +TTCGATGAAAGACAATGTTCTGCTT +>FBgn0014947_flea|818|F|22|n=1 +TTCTAGAGAACGAAAGCGAGGA +>FBgn0014947_flea|801|R|27|n=4 +TTCTCTAGAATTGCTTGTATTTGGTCG +>FBgn0014947_flea|802|R|26|n=11 +TTCTCTAGAATTGCTTGTATTTGGTC +>FBgn0014947_flea|803|R|25|n=12 +TTCTCTAGAATTGCTTGTATTTGGT +>FBgn0014947_flea|804|R|24|n=2 +TTCTCTAGAATTGCTTGTATTTGG +>FBgn0014947_flea|805|R|23|n=1 +TTCTCTAGAATTGCTTGTATTTG +>FBgn0014947_flea|1182|F|22|n=1 +TTTCTTAGAATCTGAATGTGTC +>FBgn0014947_flea|1164|R|28|n=2 +TTCTAAGAAAAGTTCTGCTGATCCAATC +>FBgn0014947_flea|1166|R|26|n=2 +TTCTAAGAAAAGTTCTGCTGATCCAA +>FBgn0014947_flea|1167|R|25|n=1 +TTCTAAGAAAAGTTCTGCTGATCCA +>FBgn0014947_flea|1168|R|24|n=1 +TTCTAAGAAAAGTTCTGCTGATCC +>FBgn0014947_flea|1169|R|23|n=1 +TTCTAAGAAAAGTTCTGCTGATC +>FBgn0014947_flea|2754|R|21|n=1 +TTTAGACCAAATTCTGCAGCT +>FBgn0014947_flea|2765|F|24|n=4 +TTGGTCTAAAAATAAAATGGAAGA +>FBgn0014947_flea|2765|F|25|n=1 +TTGGTCTAAAAATAAAATGGAAGAA +>FBgn0014947_flea|2765|F|26|n=1 +TTGGTCTAAAAATAAAATGGAAGAAG +>FBgn0014947_flea|2765|F|28|n=1 +TTGGTCTAAAAATAAAATGGAAGAAGTG +>FBgn0015945_GATE|3158|F|20|n=3 +TTCGTTCCAAATGAGCAAGC +>FBgn0015945_GATE|3140|R|28|n=9 +TTGGAACGAAATTGGCCTGATTAGCGGA +>FBgn0015945_GATE|3141|R|27|n=4 +TTGGAACGAAATTGGCCTGATTAGCGG +>FBgn0015945_GATE|3142|R|26|n=17 +TTGGAACGAAATTGGCCTGATTAGCG +>FBgn0015945_GATE|3143|R|25|n=86 +TTGGAACGAAATTGGCCTGATTAGC +>FBgn0015945_GATE|3144|R|24|n=17 +TTGGAACGAAATTGGCCTGATTAG +>FBgn0015945_GATE|6234|R|22|n=1 +TTGAAGGAAATCGCGGGAAAGC +>FBgn0015945_GATE|6246|F|25|n=1 +TTTCCTTCAAGCCGTAAAAGAGTCG +>FBgn0015945_GATE|6246|F|26|n=1 +TTTCCTTCAAGCCGTAAAAGAGTCGG +>FBgn0042682_Rt1b|1075|R|21|n=1 +TTCTTGGCGACAGATGCGTAG +>FBgn0042682_Rt1b|1086|F|23|n=1 +TTGCCAAGAATGCTAGCACGGGT +>FBgn0042682_Rt1b|2920|F|22|n=1 +TTGTTACCAAAAAGCTAAGGAG +>FBgn0042682_Rt1b|2902|R|28|n=1 +TTGGTAACAAGCTTGTAGGCGAGGCCCC +>FBgn0042682_Rt1b|2903|R|27|n=1 +TTGGTAACAAGCTTGTAGGCGAGGCCC +>FBgn0042682_Rt1b|2904|R|26|n=2 +TTGGTAACAAGCTTGTAGGCGAGGCC +>FBgn0042682_Rt1b|2904|R|26|n=1 +TTGGTAACAAGCTTGTAGGCGAGTCC +>FBgn0042682_Rt1b|2905|R|25|n=2 +TTGGTAACAAGCTTGTAGGCGAGGC +>FBgn0042682_Rt1b|2905|R|25|n=1 +TTGGTAACAAGCTTGTAGGCGAGGT +>FBgn0042682_Rt1b|2906|R|24|n=25 +TTGGTAACAAGCTTGTAGGCGAGG +>FBgn0042682_Rt1b|2907|R|23|n=1 +TTGGTAACAAGCTTGGAGGCGAG +>FBgn0042682_Rt1b|2907|R|23|n=15 +TTGGTAACAAGCTTGTAGGCGAG +>FBgn0042682_Rt1b|2908|R|22|n=1 +TTGGTAACAAGCTTGTAGGCGA +>FBgn0042682_Rt1b|2920|F|23|n=1 +TTGTTACCAAAAAGCTAAGGAGG +>FBgn0042682_Rt1b|2920|F|25|n=1 +TTGTTACCAAAAAGCTAAGGAGGAG +>FBgn0042682_Rt1b|2920|F|26|n=1 +TTGTTACCAAAAAGCTAAGGAGGAGA +>FBgn0042682_Rt1b|2920|F|27|n=1 +TTGTTACCAAAAAGCTAAGGAGGAGAG +>FBgn0042682_Rt1b|2920|F|23|n=1 +TTGTTACCAACAAGCTAAGGAGG +>FBgn0042682_Rt1b|2920|F|24|n=2 +TTGTTACCAACAAGCTAAGGAGGA +>FBgn0042682_Rt1b|4364|R|22|n=1 +TTGCCTGGAAGCGCCACTCCGC +>FBgn0042682_Rt1b|4376|F|24|n=1 +TTCCAGGCAAGAGGCACACGAGTG +>FBgn0042682_Rt1b|4376|F|26|n=1 +TTCCAGGCAAGAGGCACACGAGTGGC +>FBgn0062343_Dm88|4210|R|21|n=1 +TTGGTTAGAACATCTGCCATC +>FBgn0062343_Dm88|4221|F|24|n=1 +TTCTAACCAAGAATTTGAATAGAT +>FBgn0063427_invader4|707|F|22|n=2 +TTCGTAGGAATGGAGACGTCGG +>FBgn0063427_invader4|691|R|26|n=15 +TTCCTACGAATCGCTGTATGAACAGT +>FBgn0063428_invader3|440|F|22|n=2 +TTCCCCAGAAACGCGTGGCGAT +>FBgn0063428_invader3|425|R|25|n=1 +TTCTGGGGAAATGGCCTGCAGACGC +>FBgn0063428_invader3|427|R|23|n=1 +TTCTGGGGAAATGGCCTGCAGAC +>FBgn0063430_invader1|2082|R|20|n=1 +TTTTATCGAACCAATAGAAC +>FBgn0063430_invader1|2092|F|24|n=1 +TTCGATAAAATGTCTAAGTATGTT +>FBgn0063430_invader1|2092|F|26|n=1 +TTCGATAAAATGTCTAAGTATGTTCG +>FBgn0063433_gypsy4|3058|F|22|n=1 +TTCTTCAAAAAGAGCGTGGAAT +>FBgn0063433_gypsy4|3040|R|28|n=1 +TTTTGAAGAACTTGGATTTTTCTTGAGA +>FBgn0063433_gypsy4|3044|R|24|n=1 +TTTTGAAGAACTTGGATTTTTCTT +>FBgn0063440_baggins|5170|F|21|n=1 +TTGCACAAAATTGGCATTGCA +>FBgn0063440_baggins|5154|R|26|n=1 +TTTTGTGCAAATGGCTGTGAAGTCGG +>FBgn0063919_Max-element|3887|R|21|n=2 +TTGCTGAGAAGCGTGTTGAGC +>FBgn0063919_Max-element|3898|F|23|n=1 +TTCTCAGCAAGTTCTGGGAGGTG +>FBgn0063919_Max-element|3898|F|24|n=2 +TTCTCAGCAAGTTCTGGGAGGTGG +>FBgn0063919_Max-element|3898|F|25|n=1 +TTCTCAGCAAGTTCTGGGAGGTGGA +>FBgn0063919_Max-element|3898|F|24|n=1 +TTCTCAGCAAGTTCTGGGAGGTGT +>FBgn0067385_invader6|3024|F|21|n=1 +TTGACTAGAATGACTTAGACT +>FBgn0067385_invader6|3007|R|27|n=4 +TTCTAGTCAAAGTCGAAGGACTGCATA +>FBgn0067385_invader6|3008|R|26|n=3 +TTCTAGTCAAAGTCGAAGGACTGCAT +>FBgn0067385_invader6|3009|R|25|n=5 +TTCTAGTCAAAGTCGAAGGACTGCA +>FBgn0067385_invader6|3010|R|24|n=4 +TTCTAGTCAAAGTCGAAGGACTGC +>FBgn0067385_invader6|3011|R|23|n=1 +TTCTAGTCAAAGTCGAAGGACTG +>FBgn0067385_invader6|3014|R|20|n=1 +TTCTAGTCAAAGTCGAAGGA +>FBgn0067385_invader6|3024|F|26|n=1 +TTGACTAGAATGACTTAGACTTAGAA +>FBgn0067624_BS3|1016|R|20|n=1 +TTGATGCCAATGTTCCAACG +>FBgn0067624_BS3|1026|F|26|n=1 +TTGGCATCAATGGTGACAAATCAGCG +>FBgn0067624_BS3|1026|F|24|n=1 +TTGGCATCAATGGTGACAAATCTG +>FBgn0067624_BS3|1026|F|25|n=1 +TTGGCATCAATGGTGACAAATCTGC