Mercurial > repos > artbio > sr_bowtie

changeset 3:61ab0d4bd187 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/sr_bowtie commit 7e91a34b0ebd7bc284823c71f32691170183e388
author artbio
date Thu, 01 Feb 2018 13:07:22 -0500
parents 304adcfe3660
children 3c9d01ebc56d
files sRbowtie.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/sRbowtie.xml	Wed Jan 31 17:55:20 2018 -0500
+++ b/sRbowtie.xml	Thu Feb 01 13:07:22 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.0.2">
+<tool id="bowtieForSmallRNA" name="sR_bowtie" version="2.0.3">
     <description>for small RNA short reads</description>
     <requirements>
         <requirement type="package" version="1.1.2=py27_0">bowtie</requirement>
@@ -12,9 +12,9 @@
         #else:
             #set index_path = $refGenomeSource.index.fields.path
         #end if
-        #if $input.extension == "fasta":
+        #if $input.is_of_type('fasta'):
             #set format = "-f"
-        #elif $input.extension == "fastq" or $input.extension == "fastqsanger":
+        #elif $input.is_of_type('fastq'):
             #set format = "-q"
         #end if