Mercurial > repos > artbio > yac_clipper
changeset 7:396bc2c718a1 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/yac_clipper commit a30e10dfaf7ba8a1b6e38075f058b11186790c74
| author | artbio |
|---|---|
| date | Tue, 29 Nov 2022 08:58:44 +0000 |
| parents | acbf910cd2ae |
| children | |
| files | yac.xml |
| diffstat | 1 files changed, 3 insertions(+), 5 deletions(-) [+] |
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--- a/yac.xml Mon Nov 28 22:17:36 2022 +0000 +++ b/yac.xml Tue Nov 29 08:58:44 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="yac" name="Clip adapter" version="2.5.0"> +<tool id="yac" name="Clip adapter" version="2.5.1"> <description /> <requirements> <requirement type="package" version="3.7.6">python</requirement> @@ -149,16 +149,14 @@ ------- -yac_clipper clips 7nt long motives in 5' of adapter sequences. - -It also accepts 1 mismatch in the searched 7nt motif +yac_clipper clips 7nt long motives in 5' of adapter sequences. *It is accepting 1 mismatch in the searched 7nt motif.* **Inputs** 1. A fastq or fasta file of reads to be clipped 2. Select the size of the reads to be kept 3. Select an output format. When input is a fastq file, this may be fastq or fasta, whereas -when input is a fasta file, this only may be a fasta. + when input is a fasta file, this only may be a fasta. 4. Select whether you wish or do not wish to keep clipped sequences with unknown nucleotides (N) 5. Select a pre-built adapter sequence or enter your own sequence (at least 7 nucleotides long)