Mercurial > repos > ashvark > qiime_1_8_0
comparison bwa-0.6.2/main.h @ 0:dd1186b11b3b draft
Uploaded BWA
author | ashvark |
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date | Fri, 18 Jul 2014 07:55:14 -0400 |
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-1:000000000000 | 0:dd1186b11b3b |
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1 #ifndef BWA_MAIN_H | |
2 #define BWA_MAIN_H | |
3 | |
4 #ifdef __cplusplus | |
5 extern "C" { | |
6 #endif | |
7 | |
8 int bwa_fa2pac(int argc, char *argv[]); | |
9 int bwa_pac2cspac(int argc, char *argv[]); | |
10 int bwa_pac2bwt(int argc, char *argv[]); | |
11 int bwa_bwtupdate(int argc, char *argv[]); | |
12 int bwa_bwt2sa(int argc, char *argv[]); | |
13 int bwa_index(int argc, char *argv[]); | |
14 int bwa_aln(int argc, char *argv[]); | |
15 int bwt_bwtgen_main(int argc, char *argv[]); | |
16 | |
17 int bwa_sai2sam_se(int argc, char *argv[]); | |
18 int bwa_sai2sam_pe(int argc, char *argv[]); | |
19 | |
20 int bwa_stdsw(int argc, char *argv[]); | |
21 | |
22 int bwa_bwtsw2(int argc, char *argv[]); | |
23 | |
24 int main_fastmap(int argc, char *argv[]); | |
25 | |
26 #ifdef __cplusplus | |
27 } | |
28 #endif | |
29 | |
30 #endif |