Mercurial > repos > ashvark > qiime_1_8_0
diff bwa-0.6.2/main.h @ 0:dd1186b11b3b draft
Uploaded BWA
author | ashvark |
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date | Fri, 18 Jul 2014 07:55:14 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bwa-0.6.2/main.h Fri Jul 18 07:55:14 2014 -0400 @@ -0,0 +1,30 @@ +#ifndef BWA_MAIN_H +#define BWA_MAIN_H + +#ifdef __cplusplus +extern "C" { +#endif + + int bwa_fa2pac(int argc, char *argv[]); + int bwa_pac2cspac(int argc, char *argv[]); + int bwa_pac2bwt(int argc, char *argv[]); + int bwa_bwtupdate(int argc, char *argv[]); + int bwa_bwt2sa(int argc, char *argv[]); + int bwa_index(int argc, char *argv[]); + int bwa_aln(int argc, char *argv[]); + int bwt_bwtgen_main(int argc, char *argv[]); + + int bwa_sai2sam_se(int argc, char *argv[]); + int bwa_sai2sam_pe(int argc, char *argv[]); + + int bwa_stdsw(int argc, char *argv[]); + + int bwa_bwtsw2(int argc, char *argv[]); + + int main_fastmap(int argc, char *argv[]); + +#ifdef __cplusplus +} +#endif + +#endif