annotate tool_dependencies.xml @ 0:49c62e9b71ad draft default tip

planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/packages/package_r_for_gatk_3_4_0 commit 8764cef47529f6285678af4ca24b66d0fe516b88-dirty

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.1.2">
        <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="package_r_for_gatk_3_4_0" version="3.1.2.1">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">

                    <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="R" version="3.1.2" />
                    </repository>
                    <package>https://github.com/cran/stringi/archive/0.5-5.tar.gz</package>
                    <package>https://github.com/cran/magrittr/archive/1.5.tar.gz</package>
                    <package>https://github.com/cran/stringr/archive/1.0.0.tar.gz</package>
                    <package>https://github.com/cran/RColorBrewer/archive/1.1-2.tar.gz</package>
                    <package>https://github.com/cran/dichromat/archive/2.0-0.tar.gz</package>
                    <package>https://github.com/cran/colorspace/archive/1.2-6.tar.gz</package>
                    <package>https://github.com/cran/munsell/archive/0.4.2.tar.gz</package>
                    <package>https://github.com/cran/labeling/archive/0.3.tar.gz</package>
                    <package>https://github.com/cran/Rcpp/archive/0.11.6.tar.gz</package>
                    <package>https://github.com/cran/digest/archive/0.6.8.tar.gz</package>
                    <package>https://github.com/cran/gtable/archive/0.1.2.tar.gz</package>
                    <package>https://github.com/cran/bitops/archive/1.0-6.tar.gz</package>
                    <package>https://github.com/cran/caTools/archive/1.17.1.tar.gz</package>
                    <package>https://github.com/cran/gtools/archive/3.5.0.tar.gz</package>
                    <package>https://github.com/cran/gdata/archive/2.17.0.tar.gz</package>
                    <package>https://github.com/cran/gsalib/archive/2.1.tar.gz</package>
                    <package>https://github.com/cran/gplots/archive/2.17.0.tar.gz</package>
                    <package>https://github.com/cran/plyr/archive/1.8.3.tar.gz</package>
                    <package>https://github.com/cran/reshape/archive/0.8.5.tar.gz</package>
                    <package>https://github.com/cran/reshape2/archive/1.4.1.tar.gz</package>
                    <package>https://github.com/cran/scales/archive/0.2.5.tar.gz</package>
                    <package>https://github.com/cran/proto/archive/0.3-10.tar.gz</package>
                    <package>https://github.com/cran/MASS/archive/7.3-43.tar.gz</package>
                    <package>https://github.com/cran/ggplot2/archive/1.0.1.tar.gz</package>
                </action>
            </actions>
        </install>
        <readme>
            ggplot2 is a plotting system for R, based on the grammar of graphics, which tries to take the good parts of base and lattice graphics and none of the bad parts.
            It takes care of many of the fiddly details that make plotting a hassle (like drawing legends) as well as providing a powerful model of graphics that makes it easy to produce complex multi-layered graphics.

            http://ggplot2.org/
        </readme>
    </package>
</tool_dependency>