Mercurial > repos > bebatut > cdhit
comparison README.rst @ 0:54d811ad2b52 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/cdhit/ commit ea0424ae045ac797c080aeabab9a8536f7eb2f84-dirty
| author | bebatut |
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| date | Mon, 25 Apr 2016 12:15:23 -0400 |
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| -1:000000000000 | 0:54d811ad2b52 |
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| 1 CD_HIT memory usage | |
| 2 ==================== | |
| 3 | |
| 4 By default, maximum of 4Gb is attributed to CD_HIT. | |
| 5 | |
| 6 To change the maximum memory usage, you can edit the CD_HIT_MEM_OPTIONS in the file: | |
| 7 | |
| 8 <tool_dependency_dir>/cd-hit/4.6.4/bebatut/cdhit/<hash_string>/env.sh | |
| 9 | |
| 10 For example to increase to 8Gb, you will write: | |
| 11 | |
| 12 CD_HIT_MEM_OPTIONS='-M 8000' |