Mercurial > repos > bebatut > combine_metaphlan2_humann2

diff test-data/metaphlan2_input.txt @ 0:31394a0c0242 draft

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planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/combine_metaphlan2_humann2 commit e6bee6545960c2a1ae3ca3031ec74d7c26d0b0ce-dirty
author bebatut
date Fri, 15 Apr 2016 09:15:21 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/metaphlan2_input.txt	Fri Apr 15 09:15:21 2016 -0400
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+#SampleID	Metaphlan2_Analysis
+#clade_name	relative_abundance	coverage	average_genome_length_in_the_clade	estimated_number_of_reads_from_the_clade
+k__Bacteria	93.48715	0.138259210304	3060646	423162
+k__Archaea	6.51285	0.00963193275713	1717866	16546
+k__Bacteria|p__Firmicutes	73.45294	0.108630391421	2645593	287392
+k__Bacteria|p__Proteobacteria	19.36391	0.0286375092603	3135748	89800
+k__Archaea|p__Euryarchaeota	6.51285	0.00963193275713	1954104	18822
+k__Bacteria|p__Actinobacteria	0.36055	0.000533224419409	3230214	1722
+k__Bacteria|p__Deinococcus_Thermus	0.30974	0.000458085203848	2916300	1336
+k__Bacteria|p__Firmicutes|c__Bacilli	72.514	0.107241784241	2708875	290505
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	13.59711	0.0201089279307	3686133	74124
+k__Archaea|p__Euryarchaeota|c__Methanobacteria	6.51285	0.00963193275713	1658190	15972
+k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria	5.64659	0.00835080616008	3693177	30841
+k__Bacteria|p__Firmicutes|c__Clostridia	0.93894	0.00138860718019	2874996	3992
+k__Bacteria|p__Actinobacteria|c__Actinobacteria	0.36055	0.000533224419409	3230214	1722
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci	0.30974	0.000458085203848	2916300	1336
+k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria	0.07678	0.000113544968539	2003141	227
+k__Bacteria|p__Proteobacteria|c__Betaproteobacteria	0.04343	6.42302010405e-05	3060202	197
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales	55.38558	0.0819103700977	3407631	279120
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	17.12842	0.0253314141428	2010119	50919
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales	11.54704	0.017077045274	4079009	69657
+k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales	6.51285	0.00963193275713	1658190	15972
+k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales	5.64659	0.00835080616008	4758592	39738
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales	2.05008	0.00303188265663	4126474	12511
+k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales	0.93894	0.00138860718019	3127383	4343
+k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales	0.36055	0.000533224419409	4860922	2592
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales	0.30974	0.000458085203848	3351957	1535
+k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales	0.07678	0.000113544968539	2228417	253
+k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales	0.04343	6.42302010405e-05	3161861	203
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae	55.38558	0.0819103700977	2461214	201599
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae	17.12842	0.0253314141428	2193606	55567
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae	11.54704	0.017077045274	4079009	69657
+k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae	6.51285	0.00963193275713	2073038	19967
+k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae	5.64659	0.00835080616008	5037498	42067
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae	1.92917	0.00285306704708	5434751	15506
+k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae	0.93894	0.00138860718019	3351243	4654
+k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae	0.36055	0.000533224419409	3386340	1806
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae	0.30974	0.000458085203848	3443517	1577
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae	0.12091	0.000178815609551	2818198	504
+k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae	0.07678	0.000113544968539	2208224	251
+k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae	0.04343	6.42302010405e-05	3161861	203
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus	55.38558	0.0819103700977	2627125	215189
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	17.12842	0.0253314141428	2091707	52986
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia	11.54704	0.017077045274	4803810	82035
+k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter	6.51285	0.00963193275713	2273035	21894
+k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter	5.64659	0.00835080616008	3846637	32123
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas	1.92917	0.00285306704708	6246362	17821
+k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium	0.93894	0.00138860718019	4612938	6406
+k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium	0.36055	0.000533224419409	2605315	1389
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus	0.30974	0.000458085203848	3443517	1577
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter	0.12091	0.000178815609551	3719277	665
+k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter	0.07678	0.000113544968539	1873785	213
+k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria	0.04343	6.42302010405e-05	2338593	150
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus	28.27762	0.041820097544	2866570	119880
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis	27.10796	0.0400902725537	2525605	101252
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans	16.30896	0.0241195042226	1908490	46032
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	6.69956	0.00990806034098	5208306	51604
+k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii	6.51285	0.00963193275713	1883713	18144
+k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides	5.64659	0.00835080616008	4259863	35573
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_unclassified	4.84747	0.00716898493305	4803810	34438
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_unclassified	1.11583	0.00165021989547	6246362	10308
+k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii	0.93894	0.00138860718019	5906224	8201
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae	0.81946	0.00121190992023	2093917	2538
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa	0.81333	0.00120284715161	6695839	8054
+k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes	0.36055	0.000533224419409	2505029	1336
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_unclassified	0.15778	0.000233347738069	3443517	804
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans	0.15196	0.000224737465779	3060986	688
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii	0.12091	0.000178815609551	3966061	709
+k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori	0.07678	0.000113544968539	1635217	186
+k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis	0.04343	6.42302010405e-05	2200434	141
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus|t__Staphylococcus_aureus_unclassified	28.27762	0.041820097544	2866570	119880
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis|t__Staphylococcus_epidermidis_unclassified	27.10796	0.0400902725537	2525605	101252
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans|t__Streptococcus_mutans_unclassified	16.30896	0.0241195042226	1908490	46032
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__Escherichia_coli_unclassified	6.69956	0.00990806034098	5208306	51604
+k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii|t__Methanobrevibacter_smithii_unclassified	6.51285	0.00963193275713	1883713	18144
+k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides|t__Rhodobacter_sphaeroides_unclassified	5.64659	0.00835080616008	4259863	35573
+k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii|t__Clostridium_beijerinckii_unclassified	0.93894	0.00138860718019	5906224	8201
+k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae|t__Streptococcus_agalactiae_unclassified	0.81946	0.00121190992023	2093917	2538
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa|t__Pseudomonas_aeruginosa_unclassified	0.81333	0.00120284715161	6695839	8054
+k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes|t__Propionibacterium_acnes_unclassified	0.36055	0.000533224419409	2505029	1336
+k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans|t__GCF_000008565	0.15196	0.000224737465779	3060986	688
+k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii|t__Acinetobacter_baumannii_unclassified	0.12091	0.000178815609551	3966061	709
+k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori|t__Helicobacter_pylori_unclassified	0.07678	0.000113544968539	1635217	186
+k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis|t__Neisseria_meningitidis_unclassified	0.04343	6.42302010405e-05	2200434	141
+#estimated total number of reads from known clades: 439708