Mercurial > repos > bebatut > metaphlan2
comparison README.rst @ 0:d2448d2bf1f8 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
| author | bebatut |
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| date | Wed, 01 Jun 2016 10:45:26 -0400 |
| parents | |
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| -1:000000000000 | 0:d2448d2bf1f8 |
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| 1 Galaxy wrappers for MetaPhlAn2 | |
| 2 ============================== | |
| 3 | |
| 4 Galaxy should be able to automatically install the dependencies, i.e. the | |
| 5 MetaPhlAn2 binaries. | |
| 6 | |
| 7 After installation, you must tell Galaxy about the defaut database with | |
| 8 clade-specific marker genes, and where to find it: | |
| 9 | |
| 10 * Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line | |
| 11 * Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip | |
| 12 * Unzip it | |
| 13 * Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder |