Mercurial > repos > bebatut > metaphlan2

diff README.rst @ 0:d2448d2bf1f8 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/metaphlan2/ commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
author bebatut
date Wed, 01 Jun 2016 10:45:26 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Wed Jun 01 10:45:26 2016 -0400
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+Galaxy wrappers for MetaPhlAn2
+==============================
+
+Galaxy should be able to automatically install the dependencies, i.e. the
+MetaPhlAn2 binaries.
+
+After installation, you must tell Galaxy about the defaut database with
+clade-specific marker genes, and where to find it:
+
+* Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line
+* Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip
+* Unzip it
+* Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder