Mercurial > repos > bebatut > plot_barplot
changeset 1:7e3103db022d draft default tip
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/plot_barplot commit 5653f2982dc5aeccd7701970fdfea444e3e53e3c-dirty
| author | bebatut |
|---|---|
| date | Wed, 18 May 2016 12:26:19 -0400 |
| parents | a8e03ffaaedc |
| children | |
| files | plot_barplot.R plot_barplot.xml tool_dependencies.xml |
| diffstat | 3 files changed, 11 insertions(+), 2 deletions(-) [+] |
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--- a/plot_barplot.R Mon Apr 18 10:35:54 2016 -0400 +++ b/plot_barplot.R Wed May 18 12:26:19 2016 -0400 @@ -8,6 +8,7 @@ 'data_column', 'd', 2, 'integer', 'names_column', 'n', 2, 'integer', 'xlab', 'x', 2, 'character', + 'log', 'g', 2, 'logical', 'col', 'c', 2, 'character', 'bottom_margin', 'b', 2, 'integer', 'left_margin', 'l', 2, 'integer', @@ -40,12 +41,15 @@ col = "grey" if(!is.null(options$col)) col = options$col +log = "" +if(!is.null(options$log) && options$log) log = "x" + plot_barplot <- function(){ par(las=2) par(mar=margin) barplot(data[, data_column], horiz = T, xlab = xlab, names.arg = data[, names_column], col = col, cex.names=0.7, - cex.axis = 0.8) + cex.axis = 0.8, log = log) } if(!is.null(options$output_pdf_file)){
--- a/plot_barplot.xml Mon Apr 18 10:35:54 2016 -0400 +++ b/plot_barplot.xml Wed May 18 12:26:19 2016 -0400 @@ -28,6 +28,7 @@ --data_column $column_with_data --names_column $names_column --xlab "$xlab" + --log $log --col $col --bottom_margin $bottom_margin --left_margin $left_margin @@ -51,6 +52,8 @@ <param name="xlab" type="text" value="" label="Label for x axis" help="(--xlab)"/> + <param name="log" type="boolean" truevalue="TRUE" falsevalue="FALSE" label="Log scale?" help="(--log)"/> + <param name="col" label="Bar color" type="text" value= "blue" help="R color (--col)"/> <param name="bottom_margin" type="integer" value="5" label="Bottom margin" help="(--bottom_margin)"/> @@ -83,6 +86,7 @@ <param name="names_column" value="1"/> <param name="xlab" value=""/> <param name="col" value="blue"/> + <param name='log' value="FALSE"/> <param name="bottom_margin" value="5"/> <param name="left_margin" value="19"/> <param name="top_margin" value="1"/> @@ -96,6 +100,7 @@ <param name="column_with_data" value="3"/> <param name="names_column" value="1"/> <param name="xlab" value=""/> + <param name='log' value="FALSE"/> <param name="col" value="red"/> <param name="bottom_margin" value="5"/> <param name="left_margin" value="19"/>
--- a/tool_dependencies.xml Mon Apr 18 10:35:54 2016 -0400 +++ b/tool_dependencies.xml Wed May 18 12:26:19 2016 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="R" version="3.2.1"> - <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="r-getopt" version="1.20.0"> <repository changeset_revision="712cb82311a8" name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" toolshed="https://toolshed.g2.bx.psu.edu" />