annotate test-data/test01_stats.txt @ 1:6d8444408ff1 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 7339e1e32188846188c6b18a024dac0ee0ff4d88

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Compute transcript with isoforms if any

Number of gene                               379
Number of transcript                         379
Number of cds                                376
Number of exon                               379
Number of exon in cds                        376
Number gene overlapping                      62
Number of single exon gene                   379
Number of single exon transcript             379
mean transcripts per gene                    1.0
mean cdss per transcript                     1.0
mean exons per transcript                    1.0
mean exons per cds                           1.0
Total gene length                            342644
Total transcript length                      342644
Total cds length                             342338
Total exon length                            342644
mean gene length                             904
mean transcript length                       904
mean cds length                              910
mean exon length                             904
mean cds piece length                        910
% of genome covered by gene                  33.1
% of genome covered by transcript            33.1
% of genome covered by cds                   33.1
% of genome covered by exon                  33.1
Longest gene                                 9499
Longest transcript                           9499
Longest cds                                  9499
Longest exon                                 9499
Longest cds piece                            9499
Shortest gene                                54
Shortest transcript                          54
Shortest cds                                 54
Shortest exon                                54
Shortest cds piece                           54

Re-compute transcript without isoforms asked. We remove shortest isoforms if any

Number of gene                               379
Number of transcript                         379
Number of cds                                376
Number of exon                               379
Number of exon in cds                        376
Number gene overlapping                      62
Number of single exon gene                   379
Number of single exon transcript             379
mean transcripts per gene                    1.0
mean cdss per transcript                     1.0
mean exons per transcript                    1.0
mean exons per cds                           1.0
Total gene length                            342644
Total transcript length                      342644
Total cds length                             342338
Total exon length                            342644
mean gene length                             904
mean transcript length                       904
mean cds length                              910
mean exon length                             904
mean cds piece length                        910
% of genome covered by gene                  33.1
% of genome covered by transcript            33.1
% of genome covered by cds                   33.1
% of genome covered by exon                  33.1
Longest gene                                 9499
Longest transcript                           9499
Longest cds                                  9499
Longest exon                                 9499
Longest cds piece                            9499
Shortest gene                                54
Shortest transcript                          54
Shortest cds                                 54
Shortest exon                                54
Shortest cds piece                           54

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