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comparison macros.xml @ 3:a6318f87f2cd draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit ac954126686882dd6a64cea30070955344901a00
author bgruening
date Thu, 15 Feb 2024 15:47:19 +0000
parents e009d8260be2
children
comparison
equal deleted inserted replaced
2:e009d8260be2 3:a6318f87f2cd
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.2.0</token> 2 <token name="@TOOL_VERSION@">1.2.0</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">agat</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">agat</requirement>
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
73 ln -s '${tool.gff}' $input_annotation && 73 ln -s '${tool.gff}' $input_annotation &&
74 ]]></token> 74 ]]></token>
75 <token name="@input_reference@"><![CDATA[ 75 <token name="@input_reference@"><![CDATA[
76 #if $tool.reference_genome.source == 'history': 76 #if $tool.reference_genome.source == 'history':
77 #set $ref_genome = 'reference.fasta' 77 #set $ref_genome = 'reference.fasta'
78 ln -s -f '${tool.reference_genome.history_item}' $ref_genome && 78 ln -s -f '${tool.reference_genome.history_item}' '$ref_genome' &&
79 #else: 79 #else:
80 #set $ref_genome = $tool.reference_genome.index.fields.path 80 #set $ref_genome = $tool.reference_genome.index.fields.path
81 #end if 81 #end if
82 ]]></token> 82 ]]></token>
83 <token name="@input_annotation_double@"><![CDATA[ 83 <token name="@input_annotation_double@"><![CDATA[
84 #set $input1 = 'annotation1.' + str($tool.input_annotation1.ext) 84 #set $input1 = 'annotation1.' + str($tool.input_annotation1.ext)
85 #set $input2 = 'annotation2.' + str($tool.input_annotation2.ext) 85 #set $input2 = 'annotation2.' + str($tool.input_annotation2.ext)
86 ln -s '${tool.input_annotation1}' $input1 && 86 ln -s '${tool.input_annotation1}' '$input1' &&
87 ln -s '${tool.input_annotation2}' $input2 && 87 ln -s '${tool.input_annotation2}' '$input2' &&
88 ]]></token> 88 ]]></token>
89
90
91 </macros> 89 </macros>