Mercurial > repos > bgruening > agat

comparison test-data/test01_stats.txt @ 0:f7c0a0030254 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
author bgruening
date Tue, 23 May 2023 13:43:07 +0000
parents
children e009d8260be2
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-1:000000000000 0:f7c0a0030254
1 --------------------------------------------------------------------------------
2
3 Compute transcript with isoforms if any
4
5 Number of gene 379
6 Number of transcript 379
7 Number of cds 376
8 Number of exon 379
9 Number of exon in cds 376
10 Number gene overlapping 62
11 Number of single exon gene 379
12 Number of single exon transcript 379
13 mean transcripts per gene 1.0
14 mean cdss per transcript 1.0
15 mean exons per transcript 1.0
16 mean exons per cds 1.0
17 Total gene length 342644
18 Total transcript length 342644
19 Total cds length 342338
20 Total exon length 342644
21 mean gene length 904
22 mean transcript length 904
23 mean cds length 910
24 mean exon length 904
25 mean cds piece length 910
26 % of genome covered by gene 33.1
27 % of genome covered by transcript 33.1
28 % of genome covered by cds 33.1
29 % of genome covered by exon 33.1
30 Longest gene 9499
31 Longest transcript 9499
32 Longest cds 9499
33 Longest exon 9499
34 Longest cds piece 9499
35 Shortest gene 54
36 Shortest transcript 54
37 Shortest cds 54
38 Shortest exon 54
39 Shortest cds piece 54
40
41 Re-compute transcript without isoforms asked. We remove shortest isoforms if any
42
43 Number of gene 379
44 Number of transcript 379
45 Number of cds 376
46 Number of exon 379
47 Number of exon in cds 376
48 Number gene overlapping 62
49 Number of single exon gene 379
50 Number of single exon transcript 379
51 mean transcripts per gene 1.0
52 mean cdss per transcript 1.0
53 mean exons per transcript 1.0
54 mean exons per cds 1.0
55 Total gene length 342644
56 Total transcript length 342644
57 Total cds length 342338
58 Total exon length 342644
59 mean gene length 904
60 mean transcript length 904
61 mean cds length 910
62 mean exon length 904
63 mean cds piece length 910
64 % of genome covered by gene 33.1
65 % of genome covered by transcript 33.1
66 % of genome covered by cds 33.1
67 % of genome covered by exon 33.1
68 Longest gene 9499
69 Longest transcript 9499
70 Longest cds 9499
71 Longest exon 9499
72 Longest cds piece 9499
73 Shortest gene 54
74 Shortest transcript 54
75 Shortest cds 54
76 Shortest exon 54
77 Shortest cds piece 54
78
79 --------------------------------------------------------------------------------
80