Mercurial > repos > bgruening > agat

comparison test-data/test03.txt @ 0:f7c0a0030254 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
author bgruening
date Tue, 23 May 2023 13:43:07 +0000
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children e009d8260be2
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-1:000000000000 0:f7c0a0030254
1 usage: /home/laptop/miniconda3/envs/mulled-v1-d5d9956f5cc87a70e05e5aa3970eaf3637ef7e96fa1e50da0f6646fabcdc59e1/bin/agat_sp_compare_two_annotations.pl --gff1 annotation1.gtf --gff2 annotation2.gtf --output temp_output
2 Results of number of genes from file1 that overlap genes from file2:
3
4 ----------------------------------------------------------------------------------------------
5 | gene@transcript@cds |
6 ----------------------------------------------------------------------------------------------
7 | annotation1.gtf | annotation2.gtf | Number of cases |
8 ----------------------------------------------------------------------------------------------
9 | 1 | 0 | 366 |
10 | 1 | 1 | 4 |
11 | 2 | 2 | 3 |
12 ----------------------------------------------------------------------------------------------
13 Number gene in annotation1: 376
14 Number gene in annotation2: 10
15
16
17 ----------------------------------------------------------------------------------------------
18 | gene@transcript@exon |
19 ----------------------------------------------------------------------------------------------
20 | annotation1.gtf | annotation2.gtf | Number of cases |
21 ----------------------------------------------------------------------------------------------
22 | 1 | 0 | 3 |
23 ----------------------------------------------------------------------------------------------
24 Number gene in annotation1: 3
25 Number gene in annotation2: 0
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