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view test-data/test09.txt @ 5:e7449b2c14bf draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 28a6a1644ff8ffd8c3a47ccaaad0cb2da2aa87e3
author bgruening
date Wed, 07 Aug 2024 20:54:27 +0000
parents e009d8260be2
children
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Functional info gene@transcript records:
 _____________________________________________________________________________
|                         |      Nb holded by       |         Nb gene         |
|                         |          gene           |        holding it       |
|_____________________________________________________________________________|
|          name           |            10           |            10           |
|_____________________________________________________________________________|
|         product         |            0            |            0            |
|_____________________________________________________________________________|
|       description       |            0            |            0            |
|_____________________________________________________________________________|
|      ontology_term      |            0            |            0            |
|_____________________________________________________________________________|
|          dbxref         |            0            |            0            |
|_____________________________________________________________________________|
|      dbxref:Genbank     |            0            |            0            |
|_____________________________________________________________________________|
Nb gene = 10
Nb gene with <name> attribute = 10
Nb gene without <name> attribute = 0
Nb gene with <product> attribute = 0
Nb gene without <product> attribute = 10
Nb gene with <description> attribute = 0
Nb gene without <description> attribute = 10
Nb gene with <ontology_term> attribute = 0
Nb gene without <ontology_term> attribute = 10
Nb gene with <dbxref> attribute = 0
Nb gene without <dbxref> attribute = 10
Nb gene with <Genbank> dbxref = 0
Nb gene without <Genbank> dbxref = 10
 _______________________________________________________________________________________________________
|                         |      Nb holded by       |      Nb transcript      |      Nb gene with       |
|                         |        transcript       |        holding it       |  transcript holding it  |
|_______________________________________________________________________________________________________|
|          name           |            10           |            10           |            10           |
|_______________________________________________________________________________________________________|
|         product         |            0            |            0            |            0            |
|_______________________________________________________________________________________________________|
|       description       |            0            |            0            |            0            |
|_______________________________________________________________________________________________________|
|      ontology_term      |            0            |            0            |            0            |
|_______________________________________________________________________________________________________|
|          dbxref         |            0            |            0            |            0            |
|_______________________________________________________________________________________________________|
|      dbxref:Genbank     |            0            |            0            |            0            |
|_______________________________________________________________________________________________________|
Nb gene = 10
Nb transcript = 10
Nb gene with <name> attribute = 10
Nb gene without <name> attribute = 0
Nb transcript with <name> attribute = 10
Nb transcript without <name> attribute = 0
Nb gene with <product> attribute = 0
Nb gene without <product> attribute = 10
Nb transcript with <product> attribute = 0
Nb transcript without <product> attribute = 10
Nb gene with <description> attribute = 0
Nb gene without <description> attribute = 10
Nb transcript with <description> attribute = 0
Nb transcript without <description> attribute = 10
Nb gene with <ontology_term> attribute = 0
Nb gene without <ontology_term> attribute = 10
Nb transcript with <ontology_term> attribute = 0
Nb transcript without <ontology_term> attribute = 10
Nb gene with <dbxref> attribute = 0
Nb gene without <dbxref> attribute = 10
Nb transcript with <dbxref> attribute = 0
Nb transcript without <dbxref> attribute = 10
Nb gene with Genbank dbxref = 0
Nb gene without Genbank dbxref = 10
Nb transcript with Genbank dbxref = 0
Nb transcript without Genbank dbxref = 10
 _____________________________________________________________________________
|                         |      Nb holded by       |          Nb cds         |
|                         |           cds           |        holding it       |
|_____________________________________________________________________________|
|          name           |            10           |            10           |
|_____________________________________________________________________________|
|         product         |            10           |            10           |
|_____________________________________________________________________________|
|       description       |            0            |            0            |
|_____________________________________________________________________________|
|      ontology_term      |            12           |            5            |
|_____________________________________________________________________________|
|          dbxref         |            10           |            10           |
|_____________________________________________________________________________|
|      dbxref:Genbank     |            10           |            10           |
|_____________________________________________________________________________|
Nb cds = 10
Nb cds with <name> attribute = 10
Nb cds without <name> attribute = 0
Nb cds with <product> attribute = 10
Nb cds without <product> attribute = 0
Nb cds with <description> attribute = 0
Nb cds without <description> attribute = 10
Nb cds with <ontology_term> attribute = 5
Nb cds without <ontology_term> attribute = 5
Nb cds with <dbxref> attribute = 10
Nb cds without <dbxref> attribute = 0
Nb cds with <Genbank> dbxref = 10
Nb cds without <Genbank> dbxref = 0
 _____________________________________________________________________________
|                         |      Nb holded by       |         Nb exon         |
|                         |          exon           |        holding it       |
|_____________________________________________________________________________|
|          name           |            10           |            10           |
|_____________________________________________________________________________|
|         product         |            10           |            10           |
|_____________________________________________________________________________|
|       description       |            0            |            0            |
|_____________________________________________________________________________|
|      ontology_term      |            12           |            5            |
|_____________________________________________________________________________|
|          dbxref         |            10           |            10           |
|_____________________________________________________________________________|
|      dbxref:Genbank     |            10           |            10           |
|_____________________________________________________________________________|
Nb exon = 10
Nb exon with <name> attribute = 10
Nb exon without <name> attribute = 0
Nb exon with <product> attribute = 10
Nb exon without <product> attribute = 0
Nb exon with <description> attribute = 0
Nb exon without <description> attribute = 10
Nb exon with <ontology_term> attribute = 5
Nb exon without <ontology_term> attribute = 5
Nb exon with <dbxref> attribute = 10
Nb exon without <dbxref> attribute = 0
Nb exon with <Genbank> dbxref = 10
Nb exon without <Genbank> dbxref = 0