Mercurial > repos > bgruening > agat
view test-data/test03.txt @ 0:f7c0a0030254 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
| author | bgruening |
|---|---|
| date | Tue, 23 May 2023 13:43:07 +0000 |
| parents | |
| children | e009d8260be2 |
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usage: /home/laptop/miniconda3/envs/mulled-v1-d5d9956f5cc87a70e05e5aa3970eaf3637ef7e96fa1e50da0f6646fabcdc59e1/bin/agat_sp_compare_two_annotations.pl --gff1 annotation1.gtf --gff2 annotation2.gtf --output temp_output Results of number of genes from file1 that overlap genes from file2: ---------------------------------------------------------------------------------------------- | gene@transcript@cds | ---------------------------------------------------------------------------------------------- | annotation1.gtf | annotation2.gtf | Number of cases | ---------------------------------------------------------------------------------------------- | 1 | 0 | 366 | | 1 | 1 | 4 | | 2 | 2 | 3 | ---------------------------------------------------------------------------------------------- Number gene in annotation1: 376 Number gene in annotation2: 10 ---------------------------------------------------------------------------------------------- | gene@transcript@exon | ---------------------------------------------------------------------------------------------- | annotation1.gtf | annotation2.gtf | Number of cases | ---------------------------------------------------------------------------------------------- | 1 | 0 | 3 | ---------------------------------------------------------------------------------------------- Number gene in annotation1: 3 Number gene in annotation2: 0