Mercurial > repos > bgruening > alevin
comparison alevin.xml @ 8:04b494623f8e draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 515548aaa4b79af78c6ffc6bd55f72ee9504d30f"
| author | bgruening |
|---|---|
| date | Sat, 03 Oct 2020 18:49:31 +0000 |
| parents | ff78e9c7b0d8 |
| children | ecb9ea6269ee |
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| 7:ff78e9c7b0d8 | 8:04b494623f8e |
|---|---|
| 230 <param name="orientation" value="I"/> | 230 <param name="orientation" value="I"/> |
| 231 <param name="strandedness" value="SR"/> | 231 <param name="strandedness" value="SR"/> |
| 232 </conditional> | 232 </conditional> |
| 233 <param name="protocol" value="--chromium"/> | 233 <param name="protocol" value="--chromium"/> |
| 234 <param name="tgmap" value="minitxp.tsv"/> | 234 <param name="tgmap" value="minitxp.tsv"/> |
| 235 <param name="dumpMtx" value="Yes"/> | 235 <section name="optional"> |
| 236 <param name="freqThreshold" value="5"/> | 236 <param name="keepCBFraction" value="1"/> |
| 237 <param name="dumpFeatures" value="Yes"/> | 237 <param name="dumpFeatures" value="Yes"/> |
| 238 <param name="keepCBFraction" value="1"/> | 238 <param name="freqThreshold" value="5"/> |
| 239 <param name="dumpMtx" value="Yes"/> | |
| 240 </section> | |
| 239 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/> | 241 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/> |
| 240 </test> | 242 </test> |
| 241 <test expect_num_outputs="14"> | 243 <test expect_num_outputs="14"> |
| 242 <conditional name="refTranscriptSource"> | 244 <conditional name="refTranscriptSource"> |
| 243 <param name="TranscriptSource" value="history"/> | 245 <param name="TranscriptSource" value="history"/> |
| 252 <param name="orientation" value="I"/> | 254 <param name="orientation" value="I"/> |
| 253 <param name="strandedness" value="SR"/> | 255 <param name="strandedness" value="SR"/> |
| 254 </conditional> | 256 </conditional> |
| 255 <param name="protocol" value="--chromium"/> | 257 <param name="protocol" value="--chromium"/> |
| 256 <param name="tgmap" value="minitxp.tsv"/> | 258 <param name="tgmap" value="minitxp.tsv"/> |
| 257 <param name="dumpMtx" value="Yes"/> | |
| 258 <param name="freqThreshold" value="5"/> | |
| 259 <param name="dumpFeatures" value="Yes"/> | |
| 260 <param name="keepCBFraction" value="1"/> | |
| 261 <section name="optional"> | 259 <section name="optional"> |
| 260 <param name="keepCBFraction" value="1"/> | |
| 261 <param name="dumpFeatures" value="Yes"/> | |
| 262 <param name="numCellBootstraps" value="2"/> | 262 <param name="numCellBootstraps" value="2"/> |
| 263 <param name="freqThreshold" value="5"/> | |
| 264 <param name="dumpMtx" value="Yes"/> | |
| 263 </section> | 265 </section> |
| 264 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/> | 266 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/> |
| 265 </test> | 267 </test> |
| 266 </tests> | 268 </tests> |
| 267 <help><![CDATA[ | 269 <help><![CDATA[ |