Mercurial > repos > bgruening > bamhash
changeset 0:63f6f42d112b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bamhash commit 7aa0b566d492b1830c0bd2e54ddf4a26be95f76d
author | bgruening |
---|---|
date | Thu, 17 Sep 2015 08:00:35 -0400 |
parents | |
children | |
files | bamhash.xml test-data/1_mismatch.fastq test-data/2_mismatch.fastq test-data/Example.bam test-data/UnAligSeq24606.fasta test-data/output1_bam.txt test-data/output2_fasta.txt test-data/output3_fastq.txt test-data/output4_fastq.txt tool_dependencies.xml |
diffstat | 10 files changed, 533 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bamhash.xml Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,162 @@ +<tool id="bamhash" name="BamHash" version="1.1"> + <description>Hash BAM and FASTQ files to verify data integrity</description> + <requirements> + <requirement type="package" version="1.1">bamhash</requirement> + </requirements> + <stdio> + <exit_code range="1:" /> + <exit_code range=":-1" /> + <regex match="Error:" /> + <regex match="Exception:" /> + </stdio> + <version_command>bamhash_checksum_fastq --version</version_command> + <command><![CDATA[ + #if $tool.tool_choice=="bam": + #for $counter, $file in enumerate($tool.input_bam): + ln -s "${file}" "${counter}.bam" ## 1.bam ... 2.bam + && + #end for + bamhash_checksum_bam + $tool.noQuality_bam + $tool.noPaired_bam + #for $counter, $filename in enumerate($tool.input_bam): + "${counter}.bam" + #end for + #elif $tool.tool_choice=="fastq": + #for $counter, $file in enumerate($tool.input_fastq): + ln -s "${file}" "${counter}.fastq" ## 1.fastq ... 2.fastq + && + #end for + bamhash_checksum_fastq + $tool.noQuality_fastq + $tool.noPaired_fastq + #for $counter, $filename in enumerate($tool.input_fastq): + "${counter}.fastq" + #end for + #elif $tool.tool_choice=="fasta": + #for $counter, $file in enumerate($tool.input_fasta): + ln -s "${file}" "${counter}.fasta" ## 1.fasta ... 2.fasta + && + #end for + bamhash_checksum_fasta + #for $counter, $filename in enumerate($tool.input_fasta): + "${counter}.fasta" + #end for + #end if + $readnames + > output.txt + ]]></command> + <inputs> + <conditional name="tool"> + <param name="tool_choice" type="select" label="Choose file type:" + help=""> + <option value="bam">BAM file(s)</option> + <option value="fastq">FASTQ file(s)</option> + <option value="fasta">FASTA file(s)</option> + </param> + <when value="bam"> + <param name="input_bam" multiple="True" type="data" format="bam" label="Input file in BAM format"/> + <param name="noQuality_bam" type="boolean" checked="false" truevalue="--no-quality" + falsevalue="" + label="Ignore read quality?" + help="Do not use read quality as part of checksum. (--no-quality)"/> + <param name="noPaired_bam" type="boolean" checked="false" truevalue="--no-paired" + falsevalue="" + label="Bam files were not generated with paired-end reads?" + help="(--no-paired)" /> + </when> + <when value="fasta"> + <param name="input_fasta" multiple="True" type="data" format="fasta" label="Input file in FASTA format"/> + </when> + <when value="fastq"> + <param name="input_fastq" multiple="True" type="data" format="fastq" label="Input file in FASTQ format"/> + <param name="noQuality_fastq" type="boolean" checked="false" truevalue="--no-quality" + falsevalue="" + label="Ignore read quality?" + help="Do not use read quality as part of checksum. (--no-quality)"/> + <param name="noPaired_fastq" type="boolean" checked="false" truevalue="--no-paired" + falsevalue="" + label="List of fastq files are not paired-end reads?" + help="(--no-paired)" /> + </when> + </conditional> + <param name="readnames" type="boolean" checked="false" truevalue="--no-readnames" + falsevalue="" + label="Ignore readnames?" + help="Do not use read names as part of checksum. (--no-readnames)"/> + + </inputs> + <outputs> + <data name="output" format="txt" from_work_dir="./output.txt" + label="${tool.name} on ${on_string}"> + </data> + </outputs> + <tests> + <test> + <param name="input_bam" value="Example.bam" ftype="bam"/> + <param name="tool_choice" value="bam"/> + <output name="output" file="output1_bam.txt" ftype="txt"/> + </test> + <test> + <param name="input_fasta" value="UnAligSeq24606.fasta" ftype="fasta"/> + <param name="tool_choice" value="fasta"/> + <param name="readnames" value="--no-readnames"/> + <output name="output" file="output2_fasta.txt" ftype="txt"/> + </test> + <test> + <param name="input_fastq" value="1_mismatch.fastq,2_mismatch.fastq" ftype="fastq"/> + <param name="tool_choice" value="fastq"/> + <param name="noQuality" value="--no-quality"/> + <output name="output" file="output3_fastq.txt" ftype="txt"/> + </test> + <test> + <param name="input_fastq" value="1_mismatch.fastq,2_mismatch.fastq" ftype="fastq"/> + <param name="tool_choice" value="fastq"/> + <output name="output" file="output4_fastq.txt" ftype="txt"/> + </test> + </tests> + <help><![CDATA[ + +**WHAT IT DOES** + +Hash BAM and FASTQ files to verify data integrity + +For each pair of reads in a BAM or FASTQ file we compute a hash value composed of the readname, +whether it is first or last in pair, sequence and quality value. All the hash values are summed +up so the result is independent of the ordering within the files. The result can be compared to +verify that the pair of FASTQ files contain the same read information as the aligned BAM file. + +----- + +**BAM** + +processes a number of BAM files. BAM files are assumed to contain paired end reads. +If you run with --no-paired it treats all reads as single end and displays a warning if any read is marked as "second in pair" in the BAM file. + +----- + +**FASTA** + +processes a number of FASTA files. All FASTA files are assumed to be single end reads with no quality information. +To compare to a BAM file, run bamhash_checksum_bam --no-paired --no-quality + +----- + + +**FASTQ** + +processes a number of FASTQ files. FASTQ files are assumed to contain paired end reads, +such that the first two files contain the first pair of reads, etc. If any of the read names in the two pairs don't match the program exits with failure. + + +----- + + +**BamHash** is a Free and Open Source Software, see more details on the BamHash github_ Website. + +.. _github: https://github.com/DecodeGenetics/BamHash + + ]]></help> + <citations> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1_mismatch.fastq Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,28 @@ +@SRR043348.597 618UWAAXX100205:8:1:1048:1436/1 +ACTAGAGCACGGGGACGAGTGACGATGCAGACATACGACTGGCTGCGACCNANCAGNCGCGAGCACTGAGGCACGC ++ +##################################################!#!###!################### +@SRR043348.598 618UWAAXX100205:8:1:1048:3340/1 +TGCACCAAATATATATTCTATACTGTACATAAAATATCACAGTACCCACANTNTACNTTCTATACTGTACATAACA ++ +##################################################!#!###!################### +@SRR043348.601 618UWAAXX100205:8:1:1049:7038/1 +TGAGTCCAATATACTACCCCCTCACTCAGCCCCTGAAGGATCCCTGAACGNCNCAGNAATATATTCTTCCCCAGTT ++ +BBBB7@BBB@BBBBB@BBBBBB==BBBB@BBBBB>>=<BB@B9B,8;7)*!0!/,0!000@7?>>@B<B->?#### +@SRR043348.602 618UWAAXX100205:8:1:1049:4218/1 +CTCAAGAGATTTTCACAAGTCAGCCTCCAGATTAGGAAGAGCTGACGGGGNANAACNTCACGGTCATCTACTACTT ++ +##################################################!#!###!################### +@SRR043348.605 618UWAAXX100205:8:1:1049:5409/1 +CTGTGGAAAAGAATATATCTTCACATAAAAACTACACAGAAGCATTCTGANANACTNACTCATTTGTGATGTGTGC ++ +##################################################!#!###!################### +@SRR043348.606 618UWAAXX100205:8:1:1049:11450/1 +GTCAACCGCACTCATATAACATGCACTGCATGTCTCACAGATGTTTATTANANAAGNACATACTTGCAGAATCAAC ++ +##################################################!#!###!################### +@SRR043348.607 618UWAAXX100205:8:1:1049:12567/1 +CACAATGGAGAATATGTGAATTACTTTTCAAAAAGAAGTGTATAGGTGCANCNTCTNTTTCCTGAATAGGGCTTTA ++ +##################################################!#!###!###################
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/2_mismatch.fastq Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,40 @@ +@SRR043348.597 618UWAAXX100205:8:1:1048:1436/2 +CCCAACAGCGGGAGAAAAGCATGTGCTGCGGCGCTTCNGNNGNNNNNNNNGGCNGANCGTNNNNNNNNNNNNCGNN ++ +#####################################!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.598 618UWAAXX100205:8:1:1048:3340/2 +TTTGATATTTTTTGTACAGAATAAAATATATATTTGANGNNCNNNNNNNNTTTNTGNACANNNNNNNNNNNNTGNN ++ +#####################################!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.601 618UWAAXX100205:8:1:1049:7038/2 +ATGTGCTAGGCCCTGTGCTAGACCCAAGGAACACACTNANNANNNNNNNNACANTANTTGNNNNNNNNNNNNTTNN ++ +B@B@=B6<A8>B6@BBBBBBB>BBBBABB<A@@@###!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.602 618UWAAXX100205:8:1:1049:4218/2 +CATGAGACCAGGAGATTAAGACCAGCTTCGTCAACATNGNNANNNNNNNNCTCNACNATANNNNNNNNNNNNGANN ++ +#####################################!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.605 618UWAAXX100205:8:1:1049:5409/2 +CAAAGATCCACTTGCACATTCTACAAAAGGAGAGACTNANAANNNNNNNNAGANGANATANNNNNNNNNNNNTGNN ++ +#####################################!#!##!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.606 618UWAAXX100205:8:1:1049:11450/2 +ACAGCGCGGAGCGTGCTAATGCCTATATATGTCCTATNTNNANNNNNNNNGTANATNGTTNNNNNNNNNNNNATNN ++ +#####################################!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.607 618UWAAXX100205:8:1:1049:12567/2 +AACTTGAAGTATAATAATAATAATAATAAAAAGAATTNANNTNNNNNNNNGCANAANTGTNNNNNNNNNNNNCTNN ++ +#####################################!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.608 618UWAAXX100205:8:1:1049:13714/2 +GTTTCTTCACATGATATGCTTTATAATATTTGGTAGANANNTNNNNNNNNGATNTGNTTCNNNNNNNNNNNNGGNN ++ +@>=BBB?@BB@BB<@B?BBBB@A@B7=>?7@@>9@##!#!!#!!!!!!!!###!##!###!!!!!!!!!!!!##!! +@SRR043348.610 618UWAAXX100205:8:1:1050:6010/2 +TGTTAAGTACCAAGTTCCCTCTGTGAAAGGTAGGTAANTNTANNNNNNNNTCANTANTTGNNNNNNNNTNNNCAAT ++ +@@@@@;;2>A###########################!#!##!!!!!!!!###!##!###!!!!!!!!#!!!#### +@SRR043348.611 618UWAAXX100205:8:1:1050:1346/2 +ATGTCATGCATGTTTAACATTTTGGTAGTTGTCCATTNGNATNNNNNNNNATGNGTNTTCNNNNNNNNGNNNTTCT ++ +@99A<*@A,A'5<<<@@;;@@6A##############!#!##!!!!!!!!###!##!###!!!!!!!!#!!!####
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/UnAligSeq24606.fasta Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,265 @@ +>24.6jsd1.Tut +TTGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCCTAATA +CATGCAAGTCGAGCGAATGGATTAAGAGCTTGCTCTTATGAAGTTAGCGG +CGGACGGGTGAGTAACACGTGGGTAACCTGCCCATAAGACTGGGATAACT +CCGGGAAACCGGGGCTAATACCGGATAACATTTTGAACCGCATGGTTCGA +AATTGAAAGGCGGCTTCGGTCGTCACTTATGGATGGACCCGCGTCGCATT +AGCTAGTTGGTGAGGTAACGGCTCACCAAGGCAACGATGCGTAGCCGACC +TGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC +GGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGC +AACGCCGCGTGAGTGATGAAGGCTTTCGGGTCGTAAAACTCTGTTGTTAG +GGAAGAACAAGTGCTAGTTGAATAAGCTGGCACCTTGACGGTACCTAACC +AGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGG +CAAGCGTTATCCGGAATTATTGGGCGTAAAGAACGCGCAGGTGGTTTCTT +AAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACT +GGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTGA +AATGCGTAGAGATATGGAGGAACACCAGTGGCCCAGGCGACTTTCTGGTC +TGTAACTGACACTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATA +CCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTC +CGCCCTTTAGTGCTGAAGTTAAAGCATTAAGCACTCCGCGTGTGGAGTAC +GGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGT +GGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTG +ACATCCTCTGACAACCCTAGAGATAGGGCTTCTCCTTCGGGAGCAGAGTG +ACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAA +GTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCATCATTWAGTTGGG +CACTCTAAGGTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGT +CAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGAC +GGTACAAAGAGCTGCAAGACCGCGAGGTGGAGCTAATCTCATAAAACCGT +TCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCTGGAATCGC +TAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTA +CACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGG +TAACCTTTTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGGGTGAA +GTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTC +T +>24.6jsd2.Tut +GGTGTTGATCATGGCTCAGGACAAACGCTGGCGGCGTGCTTAATACATGCAAGTCGAACGGGCTACCTTCGGGTAGCTAGTGGCGGACGGGTGAGTAACACGTAGGTTTTCTGCCCAATAGTGGGGAATAACAGCTCGAAAGAGTTGCTAATACCGCATAAGCTCTCTTGCGTGGGCAGGAGAGGAAACCCCAGGAGCAATTCTGGGGGCTATAGGAGGAGCCTGCGGCGGATTAGCTAGATGGTGGGGTAAAGGCCTACCATGGCGACGATCCGTAGCTGGTCTGAGAGGACGGCCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAAGGAATATTCCACAATGGCCGAAAGCGTGATGGAGCGAAACCGCGTGCGGGAGGAAGCCTTTCGGGGTGTAAACCGCTTTTAGGGGAGATGAAACGCCACCGTAAGGTGGCTAAGACAGTACCCCCTGAATAAGCATCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGATGCAAGCGTTGTCCGGATTTACTGGGCGTAAAGCGCGCGCAGGCGGCAGGTTAAGTAAGGTGTGAAATCTCCCTGCTCAACGGGGAGGGTGCACTCCAGACTGACCAGCTAGAGGACGGTAGAGGGTGGTGGAATTGCTGGTGTAGCGGTGAAATGCGTAGAGATCAGCAGGAACACCCGTGGCGAAGGCGGCCACCTGGGCCGTACCTGACGCTGAGGCGCGAAGGCTAGGGGAGCGAACGGGATTAGATACCCCGGTAGTCCTAGCAGTAAACGATGTCCACTAGGTGTGGGGGGTTGTTGACCCCTTCCGTGCCGAAGCCAACGCATTAAGTGGACCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCAGCGGAGCGTGTGGTTTAATTCGATGCGACGCGAAGAACCTTACCTGGGCTTGACATGCTATCGCAACACCCTGAAAGGGGTGCCTCCTTCGGGACGGTAGCACAGATGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGTCCTTAGTTGTATATCTAAGGAGACTGCCGGAGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCAGCATGGCTCTTACGTCCAGGGCTACACATACGCTACAATGGCCGTTACAGTGAGATGCCACACCGCGAGGTGGAGCAGATCTCCAAAGGCGGCCTCAGTTCAGATTGCACTCTGCAACCCGAGTGCATGAAGTCGGAGTTGCTAGTAACCGCGTGTCAGCATAGCGCGGTGAATATGTTCCCGGGTCTTGTACACACCGCCCGTCACGTCATGGGAGCCGGCAACACTTCGAGTCCGTGAGCTAACCCCCCCTTTCGAGGGTGTGGGAGGCAGCGGCCGAGGGTGGGGCTGGTGACTGGGACGAAGTCGTAACAAGGT +>24.6jsd3.Tut +AGTTTGATCATGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGCAGCACGGGGAAGGGGCAACTCTTTTCTGGTGGCGAGTGGCAAACGGGTGAGTAACGCATCGGAACGTACCCAGTAGTGGGGGATAACGTACCGAAAGGTACGCTAATACCGCATACGACCTGAGGGTGAAAGCGGGGGACCTGTCAGAGGGCCTCGCGCTATTGGAGCGGCCGATGTCCGATTAGCTAGTTGGTGGGGTAAAGGCTCACCAAGGCTGTGATCGGTAGCTGGTCTGAGAGGACGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGTGCGAAGAAGGCCTTCGGGTTGTAAAGCACTTTTGTCCGGAACGAAAAGCGCCTGGCTAATACCTGGGTGCGATGACGGTACCGGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGTTTTGTAAGTTTGGTGTCTAAGACTGGGGCTCAACCCTGGAACGCACCGAAAACTGCAAGACTTGAGTGCAGGAGAGGAAAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCCCAGGCGACTTTCTGGACTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCTAGGTGTTATTGGTTTCCATGCCTTAGGTGCCGAAGTTAACACAGTAAGCATTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCAGTGGAGTATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCCGATGAAAGCATTAGAGATAGTGCCCCTCTTCGGAGCATTGGAGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGATCTTAGTTGCCAGCACGTGAGGTGGGCACTCTAAGATGACTGCCGGTGACAAACCGGAGGAAGGTGGTTATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTACTACAATGGCCGGTACAACGGGAAGCGAAGGAGCGATCCGGAGCCACCCCCAGCAAAGCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGTCGGAATTGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCACGAGAGCTTACAACACCCGAAGTCGGTGGGGTAACCCGCAAGGGAGCCAGCCGCCGAAGGTGGGGTAGATGATTGGGGTGAAGTCGTAACAAGGTAACC +>24.6jsd4.Tut +GAGTTTGATCATGGCTCAGGACGACTCCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATCTGAGGGAGCTTGCTCCCAAAGATTAGCGGCGGACGGGTGAGTAACACGTGGGCAACCTGCCTGTAAGACTGGGATAACTTCGGGAAACCGGAGCTAATACCGGATAATTCTTATCAACACATGTTGATAAGCTAAAAGACGGCGTAAGCTGTCACTTACAGATGGGCCCGCGGCGCATTAGCTAGTTGGTAAGGTAATGGCTTACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAGTGATGAAGGTTTTCGGATCGTAAAACTCTGTTGTTAGGGAAGAACAAGTACGAGAGTAACTGCTCGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGTCCTTTAAGTCTGATGTGAAAGCCCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGGGACTTGAGTGCAGGAGAGAAGAGTGGAATTCCACGTGTAGCGGTGAACCACGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGACTCTTTGGCCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTAGAGGGTTTCCGCCCTTTAGTGCTGAAGTAAACGCATTAAGCACTCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTCTGACCACCCTAGAGATAGGGCCTTCCCCTTCGGGGGACAGAGTGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTTGCCAGCATTCAGTTGGGCACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGATGGTACAAAGGGAAACGAAGCCGTGAGGTGTAGCTAATCCCATAAAACCATTCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCATTTGGAGCCAGCCGCCTAAGGTGGGACAGATGATTGGCGTGAAGTCGTAACAAGGTAACC +>24.6jsd5.Tut +GGAACCATCATGGCTCAGGACGAACGCAGGCGGCGTGCTTAACACATGCAAGTCGAGCGGAAAGGCCCTTCGGGGTACTCGAGCGGCGAACGGGTGAGTAACACGTGAGTAACCTGCCCCAGACTTTGGGATAACCCTCGGAAACGGGGGCTAATACCGGATATGACTGCTGATCGCATGGTTGGTGGTGGAAAGTTTTTCGGTTTGGGATGGGCTCGCGGCCTATCAGCTTGTTGGTGGGGTGATGGCCTACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACACTGGGGCTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGGAAGCCTGATGCAGCGACGCCGCGTGAGGGATGACGGCCTTCGGGTTGCCAACCTCTTTCAGCAGGGACGAAGCGTAAGTGACGGTACCTGCAGAAGAAGCGCCGGCCAACTACGTGCCAGCAGCCGCGGTAAGACGTAGGGCGCGAGCGTTGTCCGGATTTATTGNGCGTAAAGAGCTCGTAGGCGGCTTGTCGCGTCGACCGTGAAAACTTGGGGCTCAACCCCAAGCCTGCGGTCGATACGGGCAGAGTAGAGTTCGGTAGGGGAGACTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGACACCCCGGTGGCGAAGGCGGGTCTCTGGGCCGATACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCTGTAAACGTTGGGCGCTAGGTGTGGGGGGCCTCTCCGGTTCTCTGTGCCGCAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGCGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGTTTGACATGGCCGCAAAACTGTCAGAGATGGCAGGTCCTTCGGGGGCGGTCACAGGTGGTGCATGGCTGTCGTTTTCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCGATGTTGCCAGCGCGTTATGGCGGGGACTCATCGAAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACGCATGCTACAATGGCCGGTACAAACCGTTGCGAGCCCGTGAGGGGGAGCGAATCGGAAAAAGCCGGTCTCAGTTCGGATCGGGGTCTGCAACTCGACCCCGTGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTCGGTTGTACCGGAAGTGAGCGTGCCAACCCGTGAGGGGGGCAACTCCCCAGGGTACGACTGGTAACCGGGGTGAAGTCGTA +>24.6jsd6.Tut +GAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGCGCTTAACACATGCAAGTCGAGCGATAACCATGGCTTCGGCCATGGGGAGAGCGGCGAACGGGTGAGTAACACGTGAGCGATCTGCCCTCGACACTGGGATAGCCCGGGGAAACCCGGATTAATACCGGATAGCCTCTCGAGCCCACGGGCTCGTGAGAAAAGATGGCTTCGGCTTTCGGTTGAGGAGGAGCTTGCGGCGGATTAGCTTGTTGGTGAGGTAACGGCTCACCAAGGCGACGATCCGTAGCTGGTCTGAGAGGACGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCGACGCCGCGTGAGGGAAGAAGGCCTTCGGGTTGTAAACCTCTTTCAGGAGGGACGAAGCCACTCGGGTTAATACCCCAGAGGGTGACGGTACCTCCAGAAGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGGGTCATTGGGCGTAAAGCGCCCATAGGCGGCCAGATAAGTCCGCTGTGAAAACTCGAGGCTCAACTTCGAGCTGTCGGTGGAAACTATCTGGCTAGAGTCCGGAAAGAGAGAGTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAAGAACACCCGTGGCGAAGGCGGCTCTCTGGGACGGTACTGACGCTGAGACGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGGGAACTAGGTGTGGGCGGTGTCGACTCCGTCTGTGCCGAAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCAGCGGAGCATGTGGTTCAATTCGACGCAACGCGAAGAACCTTACCTAGGCTTGACATGCACTGGAATAGCGTAGAAATACGCTAGCCCTTCGGGGCTAGTGCACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTGTCCTATGTCGCCAGCGAGTAATGTCGGGGACTCATAGGAGACTGCCGGTGACAACCAGGAGGAAGGTGGGGATGATGTCAAGTCATCATGCCCCTTATGCCTAGGGCTACACACGTGCTACATTGGCCGGTACAAAGGGCTGCAAACCCGCGAGGGGGAGCGAATCCCAAAAAGCCGGTCCCGGTTCGGATTGGAGGCTGAAACTCGCCTCCATGAAGGCGGAGTTGCTAGTAATCGCGGATCAGCAATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGCCGGTATCACCCGAAGCCGGTGGCCTAACCCGCAAGGGAGGGAGCCGTCGAAGGTGGGATTGGTGACTGGGGTGAAGTCGTAACAAGGTAA +>24.6jsd7.Tut +GAGAATGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTGGAGCGACGAACCGGGGCTTGCCCCGGGGCAGAGCCGCGAACGGGTGAGTAACACGTGGGTAACCCACCCCGATGACCGGGACAACCCGAGGAAACTCGGGCTAATACCGGATGTGCTCCTTGTCTTCGAGGACAAGGCGTAAAGATAGCTTCGGCCTTCGCATCGGAACGGGCCCGCGGCCCATTAGCTTGTTGGTGGGGTAACGGCCTACCAAGGCGACGATGGGTAGCTGGTCTGAGAGGACGATCAGCCACACTGGGACTGAGACACGGGCCCCACTCCTACGGGAGGCAGCAGTTAGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCGACACTGCTTGGAGGATGAAGGTTTTCGGATCGTAAACTCCTGAACGAGGGACGAATAATGACGGTACCTCGCTAATAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACCGAGGGTGCGAGCGTTATCCGGAATCACTGGGCGTAAAGGGCGCGTAGGCGGTTTGTTAAGTCCGATGTTAAAGACCGAGGCTCAACCTCGACACGGCGTTGGATACTGGCAAGTTGGACGGTTGGAGAGGAAGGTAGAATTACCAGTGTAGCGGTGGAATGCGTAGATACTGGTAGGAATACCCATTGCGAAGGCAGCCTTCTGGACAACACGTGACGCTGAGGCGCGAAAGTGTGGGGAGCAAACCGGATTAGATACCCGGGTAGTGGTCACCCTAAACGATGCATACTTGGTGTCGGCCCGTTGGGGTCGGTGCCGGAGCTAACGCGTTAAGTATGCCGCCTGGGAAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCCTAGGGATCTCTTAGAGATAAGAGAGTGCCCTTCGGGGAACCTAGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGCTATTAGTTACCAACACTTCGGGTGGGAACTCTAATAGGACTGCCTGTGAAAGCAGGAGGAAGGCGGGGATGACGTCTAGTCAGCATGGTCCTTACGACCTGGGCTACACACGTGCTACAATGGCAGGTATAACGCGTCGCCAACTCGCGAGAGTGCGCTAATCGCTAAAAGCCTGTCCCAGTTCAGATTGCAGTCTGCAACTCGACTGCATGAAGTTGGAATCGCTAGTAATCGCAGATCAGCACTGCTGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCAAACCATGGGAGTAGGTTGCACCCAAAGACGTAACGAAGCGTCAATGCGGCTTGTGTTTAAGGTGTGGCTTATGACTGGGGTTAAGTCGTAACAAGGTAACC +>24.6jsd8.Tut +ATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAAC +ACATGCAAGTCGAACGGTAGCAGGAGAAAGCTTGCTTTCTTGCTGACGAG +TGGCGGACGGGTGAGTAATGCTTGGGAATCTGGCTTATGGAGGGGGATAA +CGACGGGAAACTGTCGCTAATACCGCGTATTATCGGAAGATGAAAGTGCG +GGACTGAGAGGCCGCATGCCATAGGATGAGCCCAAGTGGGATTAGGTAGT +TGGTGGGGTAAAGGCCTACCAAGCCTGCGATCTCTAGCTGGTCTGAGAGG +ATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGC +AGCAGTGGGGAATATTGCGCAATGGGGGGAACCCTGACGCAGCCATGCCG +CGTGAATGAAGAAGGCCTTCGGGTTGTAAAGTTCTTTCGGTATTGAGGAA +GGTTGATGTGTTAATAGCACATCAAATTGACGTTAAATACAGAAGAAGCA +CCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTT +AATCGGAATAACTGGGCGTAAAGGGCACGCAGGCCTTTATTTAAGTGAGG +TGTGAAAGCCCTGGGCTTAACCTAGGAATTGCATTTCAGACTGGGTAACT +AGAGTACTTTAGGGAGGGGTAGAATTCCACGTGTAGCGGTGAAATGCGTA +GAGATGTGGAGGAATACCGAAGGCGAAGGCAGCCCCTTGGGAATGTACTG +ACGCTCATGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA +GTCCACGCTGTAAACGCTGTCGATTTGGGGGTTGGGGTTTAACTCTGGCG +CCCGTAGCTAACGTGATAAATCGACCGCCTGGGGAGTACGGCCGCAAGGT +TAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGG +TTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCTAGA +AGAGCTCAGAGATGAGCTTGTGCCTTCGGGAACTTAGAGACAGGTGCTGC +ATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACG +AGCGCAACCCTTATCCTTTGTTGCCAGCGATACGGTCGGGAACTCAAAGG +AGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCA +TGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGCGTATACAGAGG +GAAGCGAAGCTGCGAGGTGGAGCGAATCTCATAAAGTACCCGGGAAGTCCG +GATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGC +GAATCAGAATGTCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCC +GTCACACCATGGGAGTGGGTTGTACCAGAAGTAGATAGCTTAACCTTTTG +GAGGGCGTTTACCACGGTATGATTCATGACTGGGGTGAAGTAAGTAACAAG +GTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA +>24.6jsd9.Tut +GAGTTTGATCCTGGCTCAGAACGAACGCGTTCGGCAGGCCTAACACATGCAAGTCGAACGCACCTTTCGGGGTGAGTGGCAGACGGGTGAGTAACACGTGGGAACGTGCCTTTCGGTTTGGGATAACCCAGGGAAACTTGGGCTAATACCGCGTACGCCCTTTGGGGGAAAGATTGATTTGCCGAAAGATCGGCCCGCGTCTGATTAGCTTGTCCGTGAGGTAATGGCTCACCAAGGCGACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTCACACGCGACGATAATGACGGTAGCGTGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATCACTGGGCGTAAAGGGCGCGTAGGCGGCCGATCAAGTCGGGGGTGAAAGCCTGTGGCTCAACCACAGAATTGCCTTCGATACTGTTTGGCTTGAGACCGGAAGAGGTTAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAGTGGCGAAGGCGGCTGACTGGTCCGGTTCTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCTAGCCGTTCGCAGGCTTGCCTGTCAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCCTTTGAGATGTCCGGTTTGGGCCCTGGAGACGGGGTCCTTCAGTTCGGCTGGCCGGAACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCCTTAGTTGCCATCATTGGGTTGGGCACTCTAAGGGGACTGCCGGTGATAAGCCGAGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGCAGCGAAGGGGCGACCTGGAGCTAATCCCAAAAAGCCGTCTCAGTTCAGATTGCACTCTGCAACTCGAGTGCATGAAGGCGGAATCGCTAGTAATCGTGGATCAGAACGCCACGGTGAATACGTTCCCGGGCTTTGTACACACCGCCCGTCACACCATGGGAGTTGGTCTTACCCGACGGCGCTGCGCCAACCTGCCAGGGCAACTTGGTTGGAGGCAGGCGACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAACAAGGTAACC +>24.6jsd10.Tut +TGGCAAAGATTGAACGCTGGCGGCATGCCTAACACATGCAAGTCGAACGG +TAACAGGTCTTCGGATGCTGACGAGTGGCGGACGGGTGAGTAATGCGTAG +GAATCTGTCTTTTAGTGGGGGACAACCCAGGGAAACTTGGGCTAATACCG +CATGAGCCCTGAGGGGGAAAGCGGGGGATCTTCGGACCTCGCGCTAAGGG +AGGAGCCTACGTCTGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGC +GACGATCAGTAGCTGGTCTGAGAGCCCGACCAGCCACACTGGGACTGAGA +CACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTTCGCAATGG +GGGCAACCCTGACGAAGCAATGCCGCGTGGATGAAGAAGGCCTTCGGGTT +GTAAAGTCCTTTCGTGGAGGACGAAAAGGCGGGTTCTATCACAATCTGCT +GTTGACGTGAATCCAAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCG +CGGTAATACGGGGGGTGCAAGCGTTAATTTGAATCACTGGGCGTAAAGGG +TGCGTAGGCGGTACGTTAGGTCTGTCGTGAAATCCCCGGGCTCAACCTGG +GAATGGCGGTGGAAACCGGCGGACTAGAGTATGGGAGAGGGTGGTGGAAT +TCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAACATCAGTGGCG +AAGGCGGCCACCTGGCCCAATACTGACGCTGAGGCACGGGAGCGTGGGGA +GCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGAATACT +AGATGTTTGGTGCCACGCGTACTGAGAAAACGTAGCTAACGCGATAAGTAT +TCCGCCTGGGAAGTACGGCCGCAAGGTTAAAACTCAAAGGAATTGACGGG +GGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGA +ACCTTACCTGGGCTTGACATGTCCGGAATTCTGCAGAGATGCGGGAGTGC +CCTTCGGGGAATCGGAACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGT +CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGT +TGCCAGCGGTTCGGCCGGGCACTCTAGGGAGACTGCCGGTGACAAACCGG +AGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCTTTATGTCCAGGGCTA +CACACGTGCTACAATGGCGCGTACAGAGGGAAGCCAAGCCGCGAGGTGGA +GCAGACCCCAGAAAGCGCGTCGTAGTTCGGATTGCAGTCTGCAACTCGAC +TGCATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAA +TACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGATG +GTACCAGAAGCAGCTAGC +>24.6jsd11.Tut +GAGTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGGTGAACCTTCTTCGGGAGGGGATCAGTGGCGAACGGGTGAGTAACACGTGGGCAACCTGCCCTCAGCTCTGGGATAACTCCAAGAAATTGGGGCTAATACTGGATATGACCGCTGACCGCATGGTCTGGTGGTGGAAAGATTTATCGGCTGGGGATGGGCCCGCGGCCTATCAGCTTGTTGGTGGGGTAGTGGCCTACCAAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGCAAGCAGTGGGGAATATTGCGCAATGGGCGGAAGCCTGACGCAGCGACGCCGCGTGGGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCAGCAGGGACGAAGCGGAAGTGACGGTACCTGCAGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGATTTACTGGGCGTAAAGCGCACGTAGGCGGATCTTTAAGTCAGAGGTGAAATCCCAAGGCTCAACCTTGGAACTGCCTTTGATACTGGGGATCTCGAGTCCGGGAGAGGTGAGTGGAACTGCGAGTGTAGAGGCGAAAATCGTAGATATTCGCAAGAACACCAGTGGCGAAGGCGGCTCACTGGCCCGGAACTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGGATGCTAGCCGTTAGGCAGCTTGCTGCTTAGTGGCGCAGCAAACGCTTTAAGCATCCCGCCTGGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCTTTTGACATGCCTTGGACGGATAGCAGAGATGCTTTCTTCTCTAAGGAGCCAGGGACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCCTTAGTTGCCATCATTCAGTTGGGCACTCTAGGGGGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTACAAGCTGGGCTACACACGTGCTACAATGGCGACTACAGTGGGATGCAAAAGGGCGACCTCTAGCGCATCTCCAAAAGTCGTCTCAGTTCGGATTGCACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGTAGATCAGAACGCTACGGTGAATACGTTCCGGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGCTTTACCCGAAGGCGTTTCGCTAACCGCAAGGGGGCAGACGACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAACAAGGTAA +>24.6jsd12.Tut +TTTTATGGAGAGTTTGATCCTGGCTCAGGGTGAACGCTGGCGGCGTGCTT +AAGACATGCAAGTCCCTCGCGGTCTTCGGACCGAGTGGCGCACGGGTGAG +TAACACGTAACTGACCTACCCAGAAGTCACGAATAACTGGCCGAAAGGTC +CGCTAATACGTGATGTGGTGATGCACCGTGGTGCATCACTAAAGATTTAT +CGCTTCTGGATGGGGTTGCGTTCCATCAGCTGGTTGGTGGGGTAAAGGCC +TACCAAGGCGACGACGGATAGCCGGCCTGAGAGGGTGGCCGGCCACAGGG +GCACTGAGACACGGGTCCCACTCCTACGGGTGGCAGCAGTTAGGAATCTT +CCACAATGGGCGCAAGCCTGATGGAGCGACGCCGCGTGAGGGATGAAGGT +TTTCGGATCGTAAACCTCTGAATCTGGGACGAAAGAGCCTTAGGGCAGAT +GACGGTACCAGAGTAATAGCACCGGCTAACTCCGTGCCCCCAGCCGCGGT +AATACGGAGGGTGCAAGCGTTACCCGGAATCACTGGGCGTAAAGGGCGTG +TAGGCGGAAATTTAAGTCTGGTTTTAAAGACCGGGGCTCAACCTCGGGGA +TGGACTGGATACTGGATTTCTTGACCTCTGGAGAGGTAACTGGAATTCCT +GGTGTAGCGGTGGAATGCGTAGATACCAGGAGGAACACCAATGGCGAAGG +CAAGTTACTGGACAGAAGGTGACGCTGAGGCGCGAAAGTGTGGGGAGCAA +ACCGGATTAGATACCCGGGTAGTCCACACCCTAAACGATGTACGTTGGCT +AAGCGCAGGATGCTGTGCTTGGCGAAGCTAACGCGATAAACGTACCGCCT +GGGAAGTACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGC +ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTAC +CAGGTCTTGACATGCTAGGAACTTTGGGGAGATGCAGAGGTGCCCTTCGG +GGAACCTAGACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGA +TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGCCTTTAGTTGTCAGC +ATTCAGTTGGACACTCTAGAGGGACTGCCTATGAAAGTAGGAGGAAGGCG +GGGATGACGTCTAGTCAGCATGGTCCTTACGTCCTGGGCGACACACGTGC +TACAATGGGTAGGACAACGCGCAGCAAACCCGCGAGGGTAAGCGAATCGC +TAAAACCTATCCCCAGTTCAGATCGGAGTCTGCATTCGACTCCGTGAAG +TTGGAATCGCTAGTAATCGCGGGTCAGCATACCGCGGTGAATACGTTCCC +GGGCCTTGTACACACCGCCCGTCACACCATGGGAGTAGATTGCAGTTGAA +ACCGCCGGGAGCTTAACGGCAGGCGTCTAGACTGTGGTTTATGACTGGGG +TGAAGTCGTAACAAGGTAACTGTACCGGAAGGTGCGGTTAGATCACCTCC +TTTCTCGTGAATGAAGAAGGCCTTCGGGTTGTAAAGTTCTTTCGGTATTGAGGAA +GGTTGATGTGTTAATAGCACATCAAATTGACGTTAAATACAGAAGAAGCA +CCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTT +AATCGGAATAACTGGGCGTAAAGGGCACGCAGGCGGTTATTTAAGTGAGG +TGTGAAAGCCCTGGGCTTAACCTAGGAATTGCATTTCAGACTGGGTAACT +AGAGTACTTTAGGGAGGGGTAGAATTCCACGTGTAGCGGTGAAATGCGTA +GAGATGTGGAGGAATACCGAAGGCGAAGGCAGCCCCTTGGGAATGTACTG +ACGCTCATGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA +GTCCACGCTGTAAACGCTGTCGATTTGGGGGTTGGGGTTTAACTCTGGCG +CCCGTAGCTAACGTGATAAATCGACCGCCTGGGGAGTACGGCCGCAAGGT +TAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGG +TTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCTAAGA +AGAGCTCAGAGATGAGCTTGTGCCTTCGGGAACTTAGAGACAGGTGCTGC +ATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACG +AGCGCAACCCTTATCCTTTGTTGCCAGCGATACGGTCGGGAACTCAAAGG +AGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCA +TGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGCGTATACAGAGG +GAAGCGAAGCTGCGAGGTGGAGCGAATCTCATAAAGTACGTCTAAGTCCG +GATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGC +GAATCAGAATGTCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCC +GTCACACCATGGGAGTGGGTTGTACCAGAAGTAGATAGCTTAACCTTTTG +GAGGGCGTTTACCACGGTATGATTCATGACTGGGGTGAAGTCGTAACAAG +GTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA +>24.6jsd13.Tut +GTTTGATCATGGCTCAGGACGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAGCGGAAAGGCCCACTTGTGGGTACTCGAGCGGCGAACGGGTGAGTAACACGTGAGTAATCTGCCCTTCACTCTGGGATAACGTTCAGAAATGGGTGCTAATACCGGATGTGCACATGGTCTCGCATGGGGTTGTGTGGAAAGGTTTTTCTGGTGGGGGATGTGCTCGCGGCCTATCAGCTTGTTGGTGGGGTAATGGCTTACCAAGGCTTTGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGGAAGCCTGATCCAGCAACGCCGCGTGAGGGATGACGGCCTTCGGGTTGTAAACCTCTTTCACCATTGACGAAGCTGCATCTTTTTGGGTGTGGTGACGGTAGGTGGGGAAGAAGCACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTGTCCGGAATTATTGNGCGTAAAGGGCTCGTAGGCGGTTTGTCGCGTCGGGAGTGAAAACACTGGGCTTAACTGGGTGCTTGCTTTCGATACGGGCAGACTAGAGGTATGCAGGGGAGAACGGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAAACACCGGTGGCGAAAGGCGGTCTCTGGGCATGATCTGACGCTGAGGAGCGAAAGTGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACACCGTAAACGTTGGGCGCTAGGTGTGGGATCCATTCCACGGGTTCCGTGCGACAGCTAACGCATTAAGCGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGCGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGTTTGACATATGCCGGAAAGCATCAGAGATGGTGCCCCTTTTTGTCGGTGTACAGGTGGTGCATGGCTGTCGCCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCCATGTATCCAGCAGGCCCTTCGGGGTGCTGGGGACTCATGGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACGCATGCCACAATGGCCGGTACAAAGGGCTGCGATGCCGTGAGGTGGAGCGAATCCCAAAAAGCCGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCCCATGAAGTTGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGCAACACCCGAAGCCCATGGCCCAACCCCTTTTTTGGGGAGGGAGTGGTCGAAGGTGGGGCTGGCGATTGGGACGAAGTCGTAACAAGGTAACC +>24.6jsd14.Tut +AGTTCCATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCA +AGTGGGACGCAAGGAAACACACTGTGCTTGCACACCGCGTTTTCTTGAGT +CGCGAACGGGTGAGTAACGCGTAGGTAACCTGCCTATTAGCGGGGGATAA +CTATTGGAAACGATAGCTAATACCGCATAATATTAATTATTGCATGATAA +TTGATTGAAAGATGCAAGCGCATCACTAGTAGATGGACCTGCGTTGTATT +AGCTAGTTGGTAAGGTAAGAGCTTACCAAGGCGACGATACATAGCCGACC +TGAGAGGGTGATCGGCCACACTGGGACAGAGACACGGCCCAGACTCCTAC +GGGAGGCAGCAGTAGGGAATCTTCGGCAATGGACGAAAGTCTGAGCGAGC +AACGCCGCGTGAGTGAAGAAGGCTTTCGGATCGTAAAGCTCTGTTGTAAG +TCAAGAACGTGTGTGAGAGTGGAAAGTTCACACAGTGACGGTAGCTTACC +AGAAAGGGACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCC +CGAGCGTTGTCCGGATTTATTGGGCGTAAAGGGAGCGCAGGCGGTCAGGA +AAGTCTGGAGTAAAAGGCTATGGCTCAACCATTTTGTGCTCTGGAAACTG +TCTGACTTGAGTGCAGAAGGGGAGAGTGGAATTCCATGTGTAGCGGTGAA +ATGCGTAGATATATGGAGGAACACCAGTGGCGAAAGCGGCTCTCTGGTCT +GTCACTGACGCTGAGGCTCGAAAGCGTGGGTAGCGAACAGGATTAGATAC +CCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGGTGTTAGGCCCTTTCC +GGGGCTTAGTGCCGGAGCTAACGCAATAAGCACTCCGCCGGGGAGTACG +ACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTG +GAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGA +CATCCCGATGCTATTCTTAGAGATAGGAAGTTACTTCGGTACATCGGAGA +CAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAG +TCCCGCAACGAGCGCAACCCTTATTGTTAGTTGCCATTATTAAGTTGGGC +ACTCTAGCGAGACTGCCGGTAATAAACCGGAGGAAGGTGGGGATGACGTC +AAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGTCG +GTACAACGAGTTGCGAGCCGGTGACGGCAAGCTAATCTCTGAAAGCCGAT +CTCAGTTCGGATTGGAGGCTGCAACTCGCCTCCATGAAGTCGGAATCGCT +AGTAATCGCGGATCAGCACGCCGCGGTGAATACGTTCCCGGGCCTTGTAC +ACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGAGGT +AACCTTTTAGGGGCCAGCCGCCTAAGGTGGGATGGATGATTGGGGTGAAG +TCGTAACAAGGTAGCCGTA +>24.6jsd15.Tut +GGTTCCTTCATGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAGCGAATCTTTTAAAAGCTTGCTTTTTGAAAGATTAGCGGCGGACGGGTGAGTAACACGTGGGCAACCTGCCTGTAAGACTGGGATAACTTGCGGAAACGTGAGCTAATACCAGATAGTTTTTTCTCCTGCATGGGAGAAAGAGGAAAGATGGCTCCGGCTATCACTTACAGATGGGCCCGCGGCGCATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGCAACGATGCGTAGCCGACCTGAGAGGGTGATCGGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGAGCAACGCCGCGTGAACGATGAAGGTTCTCGGATCGTAAAGTTCTGTTGTTAGGGAAGAACAAGTATCGGAGTAACTGCCGGTACCTTGACGGTACCTAACGAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGCGCGCAGGCGGTCCTTTAAGTCTGATGTGAAATCTTGCGGCTTAACCGCAAGCGGTCATTGGAAACTGGGGGACTTGAGTACAGAAGAGGAAAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGACTTTCTGGTCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAAGTGTTGGGGGGCTTCCACCCCTCAGTGCTGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAATTCTTGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCTCCTGACCTCCCTAGAGATAGGGCCTTCCCCTTCGGGGGACAGGATGACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTTGCCAGCATTCAGTTGGGCACTCTAAGGAGACTGCCGTAAAAAAACGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGATGGTACAAAGGGCAGCAAAACCGCGAGGTCAAGCCAATCCCATAAAACCATTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATACAGCCGGAATCGCTAGTAATCGCAGATCAGCATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTAACACCCGAAGTCGGTGGGGTAACCGTAAGGAGCCAGCCGCCGAAGGTGGGACAGATGATTGGGGTGAAGTCGTAACAG +>24.6jsd16.Tut +AAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTA +ACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACG +AGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGAGGGAT +AACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAG +GGGGACCTTCGGGCCTCTTGCCATCGTTAGTGCCCAGATGGGATTAGCTA +GTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGA +GGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAG +GCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGC +CGCGTGTATGAAGAAGGCCTTCGGGTTGTAGGGTACTTTCAGCGGGGAGG +AAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAG +CACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCG +TTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCA +GATGTGAAATCCCCGGGCTCAACCTGGGAACTGCATCTGATACTGGCAAG +CTTGAGTCTCGTAGAGGGGGGTAGTATTCCAGGTGTAGCGGTGAAATGCG +TAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCGCTGGACGAAGAC +TGACGCTCAGGTGCGAAAACGTGGGGAGCAAACAGGATTAGATACCCTGG +TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGT +GGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCA +AGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT +GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCA +CGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTG +CTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGC +AACGAGCGCAACCCTTATCCTTTGTTGCCAGCGGTCCGGCCGGGAACTCA +AAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTC +ATCATGGCCCTTACGACCAGGGCTACACACGTGCTACAATGGCGCATACA +AAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAG +TCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGAAATCGCTAGTAA +TCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCGTTGTACACACC +GCCCGTCACACCATGGGAGTGGGTTGCAAAAGAAGTAGGTAGCTTAACCT +TCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAA +CAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTACCTTAAAG +AAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT +>24.6jsd17.Tut +GATGAACGCTGGCGGCGTGCTTAACACATGCAAGTCGAACGGGATCCATC +AAGCTTGCTTGGTGGTGAGAGTGGCGAACGGGTGAGTAATGCGTGACCGA +CCTGCCCCATGCTCCCGAATAGCTCCTGGAAACGGGTGGTAATGCCGGAT +GTTCCACATGATCGCATGTGATTGTGGGAAAGATTCTATCGGCGTGGGAT +GGGGTCGCGTCCTATCAGCTTGTTGGTGAGGTAACGGCTCACCAAGGCTT +CGACGGGTAGCCGGCCTGAGAGGGCGACCGGCCACATTGGGACTGAGATA +CGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGC +GCAAGCCTGATGCAGCGACGCCGCGTGAGGGATGGAGGCCTTCGGGTTGT +AAACCTCTTTTGTTTGGGAGCAAGCCTTCGGGTGAGTGTACCTTTCGAAT +AAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGCAA +GCGTTATCCGGATTTATTGGGCGTAAAGGGCTCGTAGGCGGCTCGTCGCG +TCCGGTGTGAAAGTCCATCGCTTAACGGTGGACCTGCGCCGGGTACGGGC +GGGCTGGAGTGCGGTAGGGGAGACTGGAATTCCCGGTGTAACGGTGGAAT +GTGTAGATATCGGGAAGCGCACCGATGGCGAAGGCAGGTCTCTGGGCCGT +CACTGACGCTGAGGAGCGAAAGCGTGGGGAGCGAGCAGGATTAGATACCC +TGGTAGTCCACGCCGTAAACGGTGGACGCTGGATGTGGGGCACGTTCCAC +GTGTTCCGTGTCGGAGCTAACGCGTTAAGCGTCCCGCCTGGGGAGTACGG +CCGCAAGGCTAAAACTCAAAGAAATTGACGGGGGCCCGCACAAGCGGCGG +AGCATGCGGATTAATTCGATGCAACGCGAAGAACCTTACCTGGGCTTGAC +ATGTTCCCGACGACGCCAGAGATGGCGTTTCCCTTCGGGGCGGGTTCACA +GGTGGTGCATGGTCGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC +CCGCAACGAGCGCAACCCTCGCCCCGTGTTGCCAGCACGTTATGGTGGGA +ACTCACGGGGGACCGCCGGGGTTAACTCGGAGGAAGGTGGGGATGACGTC +AGATCATCATGCCCCTTACGTCCAGGGCTTCACGCATGCTACAATGGCCG +GTACAGCGGGATGCGACATGGCGACATGGAGCGGATCCCTGAAAACCGGT +CTCAGTTCGGATCGGAGCCTGCAACCCGGCTCCGTGAAGTTGGAGTCGCT +AGTAATCGCGGATCAGCAACGCCGCGGTGAATGCGTTCCCGGGCCTTGTA +CACACCGCCCGTCAAGTCATGAAAGTGGGCAGCACCCGAAGCCGGTGGCC +TAACCCCTTGTGGGATGGAGCCGTCTAAGGTGAGGCTCGTGATTGGGACT +AAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output1_bam.txt Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,1 @@ +a8e77e1f8cac9b75 318999
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output2_fasta.txt Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,1 @@ +59db3dd6f55732f2 17
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output3_fastq.txt Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,1 @@ +ff0665b385dbb466 7
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output4_fastq.txt Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,1 @@ +ff0665b385dbb466 7
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Sep 17 08:00:35 2015 -0400 @@ -0,0 +1,34 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bamhash" version="1.1"> + <install version="1.0"> + <actions> + <action target_filename="BamHash-dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz" + type="download_by_url">https://github.com/DecodeGenetics/BamHash/archive/dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz</action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>bamhash_checksum_bam</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bamhash_checksum_fasta</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bamhash_checksum_fastq</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable name="PILEOMETH_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + <![CDATA[ + BamHash: Hash BAM and FASTQ files to verify data integrity + See https://github.com/DecodeGenetics/BamHash + ]]> + </readme> + </package> +</tool_dependency>