Mercurial > repos > bgruening > bigwig_to_bedgraph

diff bigwig_to_bedgraph.xml @ 0:3799012ce2ff draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit b3c2bbc3342107c35a1dee05ccc1e4eddffd8a50-dirty
author bgruening
date Tue, 22 Sep 2015 04:12:40 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bigwig_to_bedgraph.xml	Tue Sep 22 04:12:40 2015 -0400
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+<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.0">
+    <description>
+        Convert from bigWig to bedGraph format
+    </description>
+    <requirements>
+        <requirement type="package" version="312">ucsc_tools</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    <command><![CDATA[
+        bigWigToBedGraph "${input}" "${output}"
+    ]]></command>
+    <inputs>
+        <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/>
+    </inputs>
+    <outputs>
+        <data format="bedgraph" name="output" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="bigWigToBedGraph.bw" ftype="bigwig"/>
+            <output name="output" file="bigWigToBedGraph_result1.bedgraph" ftype="bedgraph" />
+        </test>
+        <test><!-- The following crashes on old binaries of bigWigToBedGraph -->
+            <param name="input" value="bigWigToBedGraph_test2.bw" ftype="bigwig"/>
+            <output name="output" file="bigWigToBedGraph_result2.bedgraph" ftype="bedgraph" />
+        </test>
+    </tests>
+    <help><![CDATA[
+
+**What it does**
+
+Converts bigWig files to bedGraph format.
+
+    ]]></help>
+</tool>