Mercurial > repos > bgruening > bismark

changeset 6:0f8646f22b8d draft

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Uploaded
author bgruening
date Wed, 11 Feb 2015 16:21:51 -0500
parents b100248c35b8
children fcadce4d9a06
files bismark_bowtie2_wrapper.xml bismark_bowtie_wrapper.xml bismark_methylation_extractor.xml
diffstat 3 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bismark_bowtie2_wrapper.xml	Mon Feb 09 18:27:40 2015 -0500
+++ b/bismark_bowtie2_wrapper.xml	Wed Feb 11 16:21:51 2015 -0500
@@ -20,7 +20,7 @@
         ## Change this to accommodate the number of threads you have available.
         --num-threads "\${GALAXY_SLOTS:-24}"
 
-        ##--bismark_path \$SCRIPT_PATH
+        --bismark_path \$SCRIPT_PATH
 
         --bowtie2
 
--- a/bismark_bowtie_wrapper.xml	Mon Feb 09 18:27:40 2015 -0500
+++ b/bismark_bowtie_wrapper.xml	Wed Feb 11 16:21:51 2015 -0500
@@ -17,7 +17,7 @@
 <![CDATA[
         bismark_wrapper.py
 
-        ##--bismark_path \$SCRIPT_PATH
+        --bismark_path \$SCRIPT_PATH
 
         ##
         ## Bismark Genome Preparation, if desired.
--- a/bismark_methylation_extractor.xml	Mon Feb 09 18:27:40 2015 -0500
+++ b/bismark_methylation_extractor.xml	Wed Feb 11 16:21:51 2015 -0500
@@ -14,7 +14,7 @@
 
         --infile $input
 
-        #--bismark_path \$SCRIPT_PATH
+        --bismark_path \$SCRIPT_PATH
 
         #if $singlePaired.sPaired == "single":
             --single-end