Mercurial > repos > bgruening > bismark
changeset 1:9d02cd7883ad draft
Uploaded
| author | bgruening |
|---|---|
| date | Sat, 06 Jul 2013 10:04:23 -0400 |
| parents | 62c6da72dd4a |
| children | 82814a8a2395 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 6 insertions(+), 9 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Sat Jul 06 09:57:36 2013 -0400 +++ b/tool_dependencies.xml Sat Jul 06 10:04:23 2013 -0400 @@ -1,10 +1,10 @@ <?xml version="1.0"?> -<package name="samtools" version="0.1.18"> - <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_samtools_0_1_18" owner="devteam " changeset_revision="a7936f4ea405" /> -</package> <tool_dependency> + <package name="samtools" version="0.1.18"> + <repository changeset_revision="a7936f4ea405" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> <set_environment version="1.0"> - <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> + <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> </set_environment> <package name="bowtie2" version="2.1.0"> <install version="1.0"> @@ -25,7 +25,7 @@ </action> <action type="shell_command">chmod +x $INSTALL_DIR/bin/bowtie2</action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> @@ -51,7 +51,7 @@ <destination>$INSTALL_DIR/bin</destination> </action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> </install> @@ -59,6 +59,3 @@ </readme> </package> </tool_dependency> - - -