annotate get_online_data/get_online_data.xml @ 4:7c1f9962ac07 draft

Add temporary hack until my galaxy stdout/stderr UTF-8 bug is fixed.
author bgruening
date Fri, 27 Sep 2013 15:51:46 -0400
parents f653fd06f055
children c2055dd1927b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <tool id="ctb_online_data_fetch" name="Online data" version="0.2">
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2 <description>
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3 fetching ...
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4 </description>
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5 <command interpreter="python">
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6 get_online_data.py "$url_paste" $output $whitelist
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7 </command>
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8 <inputs>
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9 <param name="url_paste" type="text" area="true" size="5x55" label="URL/Text" help="Here you may specify a list of URLs (one per line) or paste the contents of a file."/>
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10 <param name="whitelist" type="text" area="true" size="10x20" label="Whitlist of filename extensions" help="Please specify a list of file extensions witch should be extracted, for example sdf, mol, smi. Every line one extension."/>
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11 </inputs>
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12 <outputs>
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13 <data format="txt" name="output" />
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14 </outputs>
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15
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16 <help>
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18 .. class:: infomark
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19
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20 **What this tool does**
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21
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22 Fetch data via FTP or HTTP and store them in your history.
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23
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24 -----
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25
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26 .. class:: infomark
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27
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28 **Input**
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29
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30 Supported filetypes are:
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31 - gz/gzip
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32 - rar
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33
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34 ZIP is supported with recursive extracting of specific filetypes.
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35
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36 </help>
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37 </tool>