view get_online_data/get_online_data.xml @ 4:7c1f9962ac07 draft

Add temporary hack until my galaxy stdout/stderr UTF-8 bug is fixed.

<tool id="ctb_online_data_fetch" name="Online data" version="0.2">
  <description>
    fetching ...
  </description>
  <command interpreter="python">
      get_online_data.py "$url_paste" $output $whitelist
  </command>
  <inputs>
      <param name="url_paste" type="text" area="true" size="5x55" label="URL/Text" help="Here you may specify a list of URLs (one per line) or paste the contents of a file."/>
      <param name="whitelist" type="text" area="true" size="10x20" label="Whitlist of filename extensions" help="Please specify a list of file extensions witch should be extracted, for example sdf, mol, smi. Every line one extension."/> 
  </inputs>
  <outputs>
     <data format="txt" name="output" />
  </outputs>

  <help>

.. class:: infomark

**What this tool does**

Fetch data via FTP or HTTP and store them in your history.

-----

.. class:: infomark

**Input**

Supported filetypes are:
	- gz/gzip
	- rar

ZIP is supported with recursive extracting of specific filetypes.

  </help>
</tool>