Mercurial > repos > bgruening > confab
annotate readme @ 2:548537fc2577 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
author | bgruening |
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date | Sun, 01 Nov 2015 10:31:42 -0500 |
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548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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1 OSRA: Optical Structure Recognition Application |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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2 |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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3 OSRA is a utility designed to convert graphical representations of chemical |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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4 structures, as they appear in journal articles, patent documents, textbooks, |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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5 trade magazines etc., into SMILES (Simplified Molecular Input Line Entry |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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6 Specification - see http://en.wikipedia.org/wiki/SMILES) or |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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7 SD files - a computer recognizable molecular structure format. |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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8 OSRA can read a document in any of the over 90 graphical formats parseable by |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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9 ImageMagick - including GIF, JPEG, PNG, TIFF, PDF, PS etc., and generate |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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10 the SMILES or SDF representation of the molecular structure images encountered |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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11 within that document. |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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12 |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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13 Note that any software designed for optical recognition is unlikely to be |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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14 perfect, and the output produced might, and probably will, contain errors, |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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15 so curation by a human knowledgeable in chemical structures is highly recommended. |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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16 |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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17 http://cactus.nci.nih.gov/osra/ |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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18 |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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19 The wrapper comes with an automatic installation of all dependencies through the |
548537fc2577
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/osra commit a44c0a13283e873a740eabcad04f021208290dfe-dirty
bgruening
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20 galaxy toolshed. |