Mercurial > repos > bgruening > cp_cellprofiler
changeset 1:0b8f8406ee16 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 6a3036d24b5ec074936f8f8283b7e176f6f1ce70"
| author | bgruening |
|---|---|
| date | Thu, 09 Apr 2020 08:14:24 -0400 |
| parents | ba4fd9fbf924 |
| children | 78a16d8c8d5e |
| files | test-data/common.txt test-data/convert_objects_to_image.txt test-data/display_data_on_image.txt test-data/enhance_or_suppress_features.txt test-data/export_to_spreadsheet.txt test-data/gray_to_color.txt test-data/identify_primary_objects.txt test-data/mask_image.txt test-data/measure_granularity.txt test-data/measure_image_area_occupied.txt test-data/measure_image_intensity.txt test-data/measure_image_quality.txt test-data/measure_object_intensity.txt test-data/measure_object_size_shape.txt test-data/measure_texture.txt test-data/relate_objects.txt test-data/save_images.txt |
| diffstat | 17 files changed, 17 insertions(+), 17 deletions(-) [+] |
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--- a/test-data/common.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/common.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/convert_objects_to_image.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/convert_objects_to_image.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/display_data_on_image.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/display_data_on_image.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/enhance_or_suppress_features.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/enhance_or_suppress_features.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/export_to_spreadsheet.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/export_to_spreadsheet.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/gray_to_color.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/gray_to_color.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/identify_primary_objects.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/identify_primary_objects.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/mask_image.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/mask_image.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_granularity.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_granularity.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_image_area_occupied.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_image_area_occupied.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_image_intensity.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_image_intensity.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_image_quality.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_image_quality.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_object_intensity.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_object_intensity.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_object_size_shape.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_object_size_shape.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/measure_texture.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/measure_texture.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/relate_objects.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/relate_objects.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location:
--- a/test-data/save_images.txt Thu Mar 26 17:14:42 2020 -0400 +++ b/test-data/save_images.txt Thu Apr 09 08:14:24 2020 -0400 @@ -18,7 +18,7 @@ Metadata extraction method:Extract from file/folder names Metadata source:File name Regular expression to extract from file name:(?P<field1>.*)_(?P<field2>[a-zA-Z0-9]+)_(?P<field3>[a-zA-Z0-9]+)_(?P<field4>[a-zA-Z0-9]+) - Regular expression to extract from folder name:(?P<Date>[0-9]{4}_[0-9]{2}_[0-9]{2})$ + Regular expression to extract from folder name:(?P<field1>.*) Extract metadata from:All images Select the filtering criteria:and (file does contain "") Metadata file location: