annotate color_to_gray.xml @ 1:e8f822eeb9fd draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 7d7a519c3a2cc612d38695b335d0f6c75a099de3"
author bgruening
date Fri, 26 Feb 2021 14:14:56 +0000
parents 4395ea2a01f4
children
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1
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1 <tool id="cp_color_to_gray" name="ColorToGray" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
0
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2 <description> converts color and channel-stacked images to grayscale</description>
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3 <macros>
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4 <import>macros.xml</import>
1
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5 <token name="@VERSION_SUFFIX@">0</token>
0
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6 <xml name="combine_weight">
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7 <param name="weight_red_channel" value="1.0" min = "0.0" max = "1.0" type="float" label="Relative weight of the red channel" />
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8 <param name="weight_green_channel" value="1.0" min = "0.0" max = "1.0" type="float" label="Relative weight of the green channel" />
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9 <param name="weight_blue_channel" value="1.0" min = "0.0" max = "1.0" type="float" label="Relative weight of the blue channel" />
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10 </xml>
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11 <xml name="image_type_param">
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12 <param name="image_type" label="Image type" type="select">
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13 <option value="RGB">RGB</option>
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14 <option value="HSV">HSV</option>
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15 <option value="Channels">Channels</option>
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16 </param>
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17 </xml>
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18
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19 <xml name="split_rgb">
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20 <conditional name="con_convert_red">
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21 <param name="yes_no" type="select" label="Convert red to gray">
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22 <option value="Yes">Yes</option>
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23 <option value="No">No</option>
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24 </param>
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25 <when value="Yes">
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26 <param name="name_output_image" value="OrigRed" type="text" label="Name the output image" />
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27 </when>
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28 <when value="No">
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29 </when>
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30 </conditional>
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31 <conditional name="con_convert_green">
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32 <param name="yes_no" type="select" label="Convert green to gray">
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33 <option value="Yes">Yes</option>
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34 <option value="No">No</option>
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35 </param>
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36 <when value="Yes">
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37 <param name="name_output_image" value="OrigGreen" type="text" label="Name the output image" />
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38 </when>
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39 <when value="No">
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40 </when>
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41 </conditional>
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42 <conditional name="con_convert_blue">
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43 <param name="yes_no" type="select" label="Convert blue to gray">
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44 <option value="Yes">Yes</option>
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45 <option value="No">No</option>
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46 </param>
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47 <when value="Yes">
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48 <param name="name_output_image" value="OrigBlue" type="text" label="Name the output image" />
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49 </when>
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50 <when value="No">
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51 </when>
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52 </conditional>
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53 </xml>
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54
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
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55 <xml name="split_hsv">
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56 <conditional name="con_convert_hue">
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57 <param name="yes_no" type="select" label="Convert hue to gray">
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58 <option value="Yes">Yes</option>
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59 <option value="No">No</option>
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60 </param>
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61 <when value="Yes">
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62 <param name="name_output_image" value="OrigHue" type="text" label="Name the output image" />
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63 </when>
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64 <when value="No">
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65 </when>
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66 </conditional>
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67 <conditional name="con_convert_saturation">
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68 <param name="yes_no" type="select" label="Convert saturation to gray">
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69 <option value="Yes">Yes</option>
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70 <option value="No">No</option>
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71 </param>
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72 <when value="Yes">
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73 <param name="name_output_image" value="OrigSaturation" type="text" label="Name the output image" />
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74 </when>
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75 <when value="No">
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76 </when>
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77 </conditional>
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78 <conditional name="con_convert_value">
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79 <param name="yes_no" type="select" label="Convert value to gray">
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80 <option value="Yes">Yes</option>
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81 <option value="No">No</option>
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82 </param>
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83 <when value="Yes">
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84 <param name="name_output_image" value="OrigValue" type="text" label="Name the output image" />
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85 </when>
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86 <when value="No">
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87 </when>
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88 </conditional>
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89 </xml>
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90
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
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91 <xml name="combine">
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92 <param name="name_output_image" label="Name the output image" value="OrigGray" type="text">
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93 <expand macro="text_validator" />
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94 </param>
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95 <conditional name="con_image_type">
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96 <expand macro="image_type_param" />
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97 <when value="RGB">
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98 <expand macro="combine_weight"/>
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99 </when>
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100 <when value="HSV">
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101 <expand macro="combine_weight"/>
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102 </when>
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103 <when value="Channels">
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104 <repeat name="rpt_channel" title="another channel" min="1">
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105 <param name="channel_no" value="1" type="integer" label="Channel number" />
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106 <param name="weight_of_channel" value="1.0" type="float" min = "0.0" max = "1.0" label="Relative weight of the channel" />
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107 </repeat>
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108 </when>
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109 </conditional>
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110 </xml>
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111 <xml name="split">
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112 <conditional name="con_image_type">
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113 <expand macro="image_type_param" />
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114 <when value="RGB">
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115 <expand macro="split_rgb"/>
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116 </when>
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117 <when value="HSV">
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118 <expand macro="split_hsv"/>
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119 </when>
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120 <when value="Channels">
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121 <repeat name="rpt_channel" title="another channel" min="1">
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122 <param name="channel_no" value="1" type="integer" label="Channel number" help="This setting chooses a channel to be processed. The channel number should be within the range of channels in the image."/>
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123 <param name="image_name" type="text" label="Image name" />
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124 </repeat>
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125 </when>
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126 </conditional>
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127 </xml>
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128
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129 </macros>
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130 <expand macro="py_requirements"/>
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131 <command detect_errors="exit_code">
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132 <![CDATA[
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133 python '$__tool_directory__/color_to_gray.py' -p '$input_pipeline' -i '$input_json'
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134 ]]>
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135 </command>
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136 <configfiles>
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137 <inputs name="input_json"/>
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138 </configfiles>
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139 <inputs>
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140 <expand macro="input_pipeline_param"/>
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141 <param name="name_input_image" label="Enter the name of the input image" value="DNA" type="text">
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142 <expand macro="text_validator" />
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143 </param>
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144 <conditional name="con_conversion_method">
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145 <param name="conversion_method" type="select" label="Conversion method" >
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146 <help>
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147 <![CDATA[
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
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148 How do you want to convert the color image?
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149 <i>Split:</i> Splits the channels of a color image (e.g., red, green, blue) into separate grayscale images.
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150 <i>Combine:</i> Converts a color image to a grayscale image by combining channels together (e.g., red, green, blue).
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151 ]]>
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152
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153 </help>
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154 <option value="Combine">Combine</option>
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155 <option value="Split">Split</option>
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156 </param>
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157 <when value="Combine">
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158 <expand macro="combine"/>
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159 </when>
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160 <when value="Split">
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161 <expand macro="split"/>
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162 </when>
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163 </conditional>
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164
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165 </inputs>
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166 <outputs>
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167 <expand macro="output_pipeline_param" />
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168 </outputs>
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169 <tests>
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170 <test>
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171 <param name="input_pipeline" value="common.cppipe"/>
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172 <param name="name_input_image" value="OrigColor" />
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173 <conditional name="con_conversion_method">
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174 <param name="conversion_method" value="Combine"/>
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175 <param name="name_output_image" value="OrigGray" />
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176 <conditional name="con_image_type">
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177 <param name = "image_type" value="RGB"/>
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178 <param name ="weight_red_channel" value = "1.0" />
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179 <param name ="weight_green_channel" value = "1.0" />
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180 <param name ="weight_blue_channel" value = "1.0" />
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181 </conditional>
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182 </conditional>
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183 <expand macro="test_out_file" file="color_to_gray.cppipe" />
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diff changeset
184 </test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
185 <test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
186 <param name="input_pipeline" value="common.cppipe"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
187 <param name="name_input_image" value="DNA" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
188 <conditional name="con_conversion_method">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
189 <param name="conversion_method" value="Combine"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
190 <param name="name_output_image" value="OrigGray" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
191 <conditional name="con_image_type">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
192 <param name = "image_type" value="Channels"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
193 <repeat name="rpt_channel">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
194 <param name="channel_no" value="2" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
195 <param name="weight_of_channel" value="0.2" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
196 </repeat>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
197 <repeat name="rpt_channel">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
198 <param name="channel_no" value="3" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
199 <param name="weight_of_channel" value="0.5" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
200 </repeat>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
201 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
202 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
203
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
204 <expand macro="test_out_file" file="color_to_gray_combine_channels.cppipe" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
205 </test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
206 <test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
207 <param name="input_pipeline" value="common.cppipe"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
208 <param name="name_input_image" value="DNA" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
209 <conditional name="con_conversion_method">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
210 <param name="conversion_method" value="Split"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
211 <param name="name_output_image" value="OrigGray" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
212 <conditional name="con_image_type">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
213 <param name = "image_type" value="HSV"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
214 <conditional name="con_convert_hue">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
215 <param name="yes_no" value="Yes" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
216 <param name="name_output_image" value="OutputHue" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
217 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
218 <conditional name="con_convert_saturation">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
219 <param name="yes_no" value="No" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
220 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
221 <conditional name="con_convert_value">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
222 <param name="yes_no" value="Yes" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
223 <param name="name_output_image" value="OutputValue" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
224 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
225 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
226 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
227
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
228 <expand macro="test_out_file" file="color_to_gray_split_hsv.cppipe" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
229 </test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
230 <test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
231 <param name="input_pipeline" value="common.cppipe"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
232 <param name="name_input_image" value="DNA" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
233 <conditional name="con_conversion_method">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
234 <param name="conversion_method" value="Split"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
235 <param name="name_output_image" value="DNA" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
236 <conditional name="con_image_type">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
237 <param name = "image_type" value="RGB"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
238 <conditional name="con_convert_red">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
239 <param name="yes_no" value="Yes" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
240 <param name="name_output_image" value="OutputRed" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
241 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
242 <conditional name="con_convert_green">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
243 <param name="yes_no" value="Yes" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
244 <param name="name_output_image" value="OutputGreen" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
245 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
246 <conditional name="con_convert_blue">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
247 <param name="yes_no" value="No" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
248
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
249 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
250 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
251 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
252
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
253 <expand macro="test_out_file" file="color_to_gray_split_rgb.cppipe" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
254 </test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
255 <test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
256 <param name="input_pipeline" value="common.cppipe"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
257 <param name="name_input_image" value="DNA" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
258 <conditional name="con_conversion_method">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
259 <param name="conversion_method" value="Split"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
260 <param name="name_output_image" value="DNA" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
261 <conditional name="con_image_type">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
262 <param name = "image_type" value="Channels"/>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
263 <repeat name="rpt_channel">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
264 <param name="channel_no" value="2" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
265 <param name="image_name" value="Image2" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
266 </repeat>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
267 <repeat name="rpt_channel">
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
268 <param name="channel_no" value="3" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
269 <param name="image_name" value="Image3" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
270 </repeat>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
271 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
272 </conditional>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
273
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
274 <expand macro="test_out_file" file="color_to_gray_split_channels.cppipe" />
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
275 </test>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
diff changeset
276 </tests>
4395ea2a01f4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
bgruening
parents:
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277 <help>
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278 <![CDATA[
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279
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280 .. class:: infomark
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281
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282 **What it does**
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283
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284 This module converts color and channel-stacked images to grayscale. All channels can be merged into one grayscale image (Combine), or each channel can be extracted into a separate grayscale image (Split). If you use Combine, the relative weights you provide allow adjusting the contribution of the colors relative to each other. Note that all Identify modules require grayscale images.
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285
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286 @COMMON_HELP@
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287 ]]>
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288 </help>
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289 <expand macro="citations"/>
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290 </tool>